Package evaluation to test BiochemicalVisualization on Julia 1.14.0-DEV.2114 (cccbcd9611*) started at 2026-05-05T17:24:47.940 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 16.07s ################################################################################ # Installation # Installing BiochemicalVisualization... Resolving package versions... Installed Calculus ──────────────────── v0.5.2 Installed Extents ───────────────────── v0.1.6 Installed OrderedCollections ────────── v1.8.1 Installed libinchi_jll ──────────────── v1.6.0+0 Installed SentinelArrays ────────────── v1.4.9 Installed UnitfulAtomic ─────────────── v1.0.0 Installed InlineStrings ─────────────── v1.4.5 Installed PreallocationTools ────────── v1.2.0 Installed Reexport ──────────────────── v1.2.2 Installed MsgPack ───────────────────── v1.2.1 Installed Tables ────────────────────── v1.12.1 Installed InverseFunctions ──────────── v0.1.17 Installed OptimizationLBFGSB ────────── v1.4.1 Installed EnumX ─────────────────────── v1.0.7 Installed PhysicalConstants ─────────── v0.2.5 Installed Mendeleev ─────────────────── v1.0.2 Installed Hyperscript ───────────────── v0.0.5 Installed Missings ──────────────────── v1.2.0 Installed TableTraits ───────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed Crayons ───────────────────── v4.1.1 Installed Preferences ───────────────── v1.5.2 Installed SortingAlgorithms ─────────── v1.2.2 Installed UnPack ────────────────────── v1.0.2 Installed Format ────────────────────── v1.3.7 Installed Inflate ───────────────────── v0.1.5 Installed URIs ──────────────────────── v1.6.1 Installed DataStructures ────────────── v0.19.4 Installed ADTypes ───────────────────── v1.22.0 Installed MacroTools ────────────────── v0.5.16 Installed FillArrays ────────────────── v1.16.0 Installed RecursiveArrayTools ───────── v4.3.0 Installed Quaternions ───────────────── v0.7.7 Installed AbstractTrees ─────────────── v0.4.5 Installed DelimitedFiles ────────────── v1.9.1 Installed MakieCore ─────────────────── v0.10.0 Installed CodecZlib ─────────────────── v0.7.8 Installed Observables ───────────────── v0.5.5 Installed ArnoldiMethod ─────────────── v0.4.0 Installed ExprTools ─────────────────── v0.1.10 Installed SparseMatrixColorings ─────── v0.4.27 Installed ArrayInterface ────────────── v7.24.0 Installed ConsoleProgressMonitor ────── v0.1.2 Installed DataValueInterfaces ───────── v1.0.0 Installed RealDot ───────────────────── v0.1.0 Installed GPUArraysCore ─────────────── v0.2.0 Installed TruncatedStacktraces ──────── v1.4.0 Installed LoggingExtras ─────────────── v1.2.0 Installed coordgenlibs_jll ──────────── v3.0.2+0 Installed StructUtils ───────────────── v2.8.1 Installed TerminalLoggers ───────────── v0.1.7 Installed SparseConnectivityTracer ──── v1.2.1 Installed SimpleTraits ──────────────── v0.9.5 Installed L_BFGS_B_jll ──────────────── v3.0.1+0 Installed BitFlags ──────────────────── v0.1.9 Installed BufferedStreams ───────────── v1.2.2 Installed LeftChildRightSiblingTrees ── v0.2.1 Installed HTTP ──────────────────────── v1.11.0 Installed Roots ─────────────────────── v3.0.0 Installed Scratch ───────────────────── v1.3.0 Installed SimpleBufferStream ────────── v1.2.0 Installed PooledArrays ──────────────── v1.4.3 Installed MetaGraphs ────────────────── v0.9.0 Installed Setfield ──────────────────── v1.1.2 Installed PDMats ────────────────────── v0.11.37 Installed OptimizationBase ──────────── v5.1.1 Installed WorkerUtilities ───────────── v1.6.1 Installed DocStringExtensions ───────── v0.9.5 Installed LBFGSB ────────────────────── v0.4.1 Installed CompositionsBase ──────────── v0.1.2 Installed TableOperations ───────────── v1.2.0 Installed BiochemicalVisualization ──── v0.3.4 Installed RelocatableFolders ────────── v1.0.1 Installed CommonSolve ───────────────── v0.2.6 Installed ConcurrentUtilities ───────── v2.5.1 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed CSV ───────────────────────── v0.10.16 Installed RecipesBase ───────────────── v1.3.4 Installed FunctionWrappersWrappers ──── v1.8.0 Installed DifferentiationInterface ──── v0.7.17 Installed DataAPI ───────────────────── v1.16.0 Installed InvertedIndices ───────────── v1.3.1 Installed BiochemicalAlgorithms ─────── v0.6.9 Installed Colors ────────────────────── v0.13.1 Installed SciMLOperators ────────────── v1.18.0 Installed SciMLStructures ───────────── v1.10.0 Installed MolecularGraph ────────────── v0.22.0 Installed StaticArrays ──────────────── v1.9.18 Installed StaticArraysCore ──────────── v1.4.4 Installed WidgetsBase ───────────────── v0.1.4 Installed ThreadPools ───────────────── v2.1.1 Installed SciMLPublic ───────────────── v1.0.1 Installed ColorTypes ────────────────── v0.12.1 Installed StringManipulation ────────── v0.4.4 Installed Requires ──────────────────── v1.3.1 Installed FunctionWrappers ──────────── v1.1.3 Installed FastClosures ──────────────── v0.3.2 Installed AutoHashEquals ────────────── v2.2.0 Installed Parsers ───────────────────── v2.8.4 Installed BioGenerics ───────────────── v0.1.5 Installed Unitful ───────────────────── v1.28.0 Installed JSON ──────────────────────── v1.5.2 Installed SciMLBase ─────────────────── v3.7.1 Installed TestItems ─────────────────── v1.0.0 Installed JLLWrappers ───────────────── v1.7.1 Installed WeakRefStrings ────────────── v1.4.3 Installed PrettyTables ──────────────── v3.3.2 Installed Deno_jll ──────────────────── v1.33.4+0 Installed GeometryBasics ────────────── v0.5.10 Installed StructTypes ───────────────── v1.11.0 Installed IterTools ─────────────────── v1.10.0 Installed DataFrames ────────────────── v1.8.2 Installed Measurements ──────────────── v2.14.1 Installed FilePathsBase ─────────────── v0.9.24 Installed Accessors ─────────────────── v0.1.44 Installed ConstructionBase ──────────── v1.6.0 Installed Adapt ─────────────────────── v4.5.2 Installed RuntimeGeneratedFunctions ─── v0.5.18 Installed Bonito ────────────────────── v4.2.0 Installed Graphs ────────────────────── v1.14.0 Installed BioStructures ─────────────── v4.7.1 Installed ChunkSplitters ────────────── v3.2.0 Installed ExceptionUnwrapping ───────── v0.1.11 Installed TranscodingStreams ────────── v0.11.3 Installed ProgressLogging ───────────── v0.1.6 Installed CellListMap ───────────────── v0.9.17 Installed EarCut_jll ────────────────── v2.2.4+0 Installed Compat ────────────────────── v4.18.1 Installed SymbolicIndexingInterface ─── v0.3.46 Installed Optimization ──────────────── v5.5.1 Installed Statistics ────────────────── v1.11.1 Installed MbedTLS ───────────────────── v1.1.10 Installed StringEncodings ───────────── v0.3.7 Installed OpenSSL ───────────────────── v1.6.1 Installed YAML ──────────────────────── v0.4.16 Installed ProgressMeter ─────────────── v1.11.0 Installed JSON3 ─────────────────────── v1.14.3 Installed BioSymbols ────────────────── v5.2.0 Installed Parameters ────────────────── v0.12.3 Installed SciMLLogging ──────────────── v1.9.1 Installed PrecompileTools ───────────── v1.3.3 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed MbedTLS_jll ───────────────── v2.28.1010+0 Installed FixedPointNumbers ─────────── v0.8.5 Installed Rotations ─────────────────── v1.7.1 Installed Scanf ─────────────────────── v0.5.4 Installed IntervalSets ──────────────── v0.7.14 Installing 8 artifacts Installed artifact EarCut 80.5 KiB Installed artifact L_BFGS_B 45.2 KiB Installed artifact libinchi 933.4 KiB Installed artifact coordgenlibs 303.6 KiB Installed artifact Libiconv 1.9 MiB Installed artifact MbedTLS 2.2 MiB Installed artifact testfiles 6.2 MiB Installed artifact Deno 38.5 MiB Updating `~/.julia/environments/v1.14/Project.toml` [00dfb448] + BiochemicalVisualization v0.3.4 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.22.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.5.2 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.24.0 [15f4f7f2] + AutoHashEquals v2.2.0 [47718e42] + BioGenerics v0.1.5 [de9282ab] + BioStructures v4.7.1 [3c28c6f8] + BioSymbols v5.2.0 [9d651bdf] + BiochemicalAlgorithms v0.6.9 [00dfb448] + BiochemicalVisualization v0.3.4 [d1d4a3ce] + BitFlags v0.1.9 [824d6782] + Bonito v4.2.0 [e1450e63] + BufferedStreams v1.2.2 [336ed68f] + CSV v0.10.16 [49dc2e85] + Calculus v0.5.2 [69e1c6dd] + CellListMap v0.9.17 [ae650224] + ChunkSplitters v3.2.0 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [38540f10] + CommonSolve v0.2.6 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.1 [88cd18e8] + ConsoleProgressMonitor v0.1.2 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.4 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [a0c0ee7d] + DifferentiationInterface v0.7.17 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.7 [460bff9d] + ExceptionUnwrapping v0.1.11 [e2ba6199] + ExprTools v0.1.10 [411431e0] + Extents v0.1.6 [9aa1b823] + FastClosures v0.3.2 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v1.8.0 [46192b85] + GPUArraysCore v0.2.0 [5c1252a2] + GeometryBasics v0.5.10 [86223c79] + Graphs v1.14.0 [cd3eb016] + HTTP v1.11.0 [47d2ed2b] + Hyperscript v0.0.5 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 [8197267c] + IntervalSets v0.7.14 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.5.2 [0f8b85d8] + JSON3 v1.14.3 [5be7bae1] + LBFGSB v0.4.1 [b964fa9f] + LaTeXStrings v1.4.0 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [20f20a25] + MakieCore v0.10.0 [739be429] + MbedTLS v1.1.10 [eff96d63] + Measurements v2.14.1 [c116f080] + Mendeleev v1.0.2 [626554b9] + MetaGraphs v0.9.0 [e1d29d7a] + Missings v1.2.0 [6c89ec66] + MolecularGraph v0.22.0 [99f44e22] + MsgPack v1.2.1 [510215fc] + Observables v0.5.5 [4d8831e6] + OpenSSL v1.6.1 [7f7a1694] + Optimization v5.5.1 [bca83a33] + OptimizationBase v5.1.1 [22f7324a] + OptimizationLBFGSB v1.4.1 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.4 [5ad8b20f] + PhysicalConstants v0.2.5 [2dfb63ee] + PooledArrays v1.4.3 [d236fae5] + PreallocationTools v1.2.0 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [33c8b6b6] + ProgressLogging v0.1.6 [92933f4c] + ProgressMeter v1.11.0 [94ee1d12] + Quaternions v0.7.7 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v4.3.0 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [f2b01f46] + Roots v3.0.0 [6038ab10] + Rotations v1.7.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.18 [6ef1bc8b] + Scanf v0.5.4 [0bca4576] + SciMLBase v3.7.1 ⌅ [a6db7da4] + SciMLLogging v1.9.1 [c0aeaf25] + SciMLOperators v1.18.0 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.10.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [9f842d2f] + SparseConnectivityTracer v1.2.1 [0a514795] + SparseMatrixColorings v0.4.27 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.4 [856f2bd8] + StructTypes v1.11.0 [ec057cc2] + StructUtils v2.8.1 [2efcf032] + SymbolicIndexingInterface v0.3.46 [ab02a1b2] + TableOperations v1.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [5d786b92] + TerminalLoggers v0.1.7 [1c621080] + TestItems v1.0.0 [b189fb0b] + ThreadPools v2.1.1 [3bb67fe8] + TranscodingStreams v0.11.3 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.28.0 [a7773ee8] + UnitfulAtomic v1.0.0 [ea10d353] + WeakRefStrings v1.4.3 [eead4739] + WidgetsBase v0.1.4 [76eceee3] + WorkerUtilities v1.6.1 [ddb6d928] + YAML v0.4.16 ⌅ [04572ae6] + Deno_jll v1.33.4+0 [5ae413db] + EarCut_jll v2.2.4+0 [81d17ec3] + L_BFGS_B_jll v3.0.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [f6050b86] + coordgenlibs_jll v3.0.2+0 [172afb32] + libinchi_jll v1.6.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] + LibCURL_jll v8.19.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2026.3.19 [4536629a] + OpenBLAS_jll v0.3.33+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 19.82s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 4.9 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 3.1 s ✓ MacroTools 1.3 s ✓ InlineStrings 0.6 s ✓ Reexport 0.9 s ✓ ConstructionBase 0.7 s ✓ DataValueInterfaces 2.2 s ✓ Format 1.1 s ✓ Observables 1.2 s ✓ Calculus 1.0 s ✓ IterTools 0.8 s ✓ IntervalSets 0.8 s ✓ Inflate 0.8 s ✓ CommonSolve 1.1 s ✓ TranscodingStreams 0.8 s ✓ LaTeXStrings 0.7 s ✓ TestItems 1.0 s ✓ Statistics 1.0 s ✓ StaticArraysCore 0.9 s ✓ ChunkSplitters 0.9 s ✓ AutoHashEquals 0.9 s ✓ SimpleBufferStream 0.9 s ✓ DataAPI 0.9 s ✓ SciMLPublic 0.8 s ✓ RealDot 1.3 s ✓ URIs 0.9 s ✓ InvertedIndices 1.0 s ✓ InverseFunctions 0.9 s ✓ BitFlags 0.9 s ✓ CompositionsBase 1.2 s ✓ AbstractTrees 0.9 s ✓ EnumX 1.0 s ✓ WorkerUtilities 2.3 s ✓ FillArrays 0.9 s ✓ ExprTools 0.8 s ✓ UnPack 1.0 s ✓ Extents 1.4 s ✓ OrderedCollections 1.6 s ✓ FunctionWrappers 1.4 s ✓ ADTypes 1.3 s ✓ DocStringExtensions 1.1 s ✓ FastClosures 1.0 s ✓ BufferedStreams 0.8 s ✓ IteratorInterfaceExtensions 2.0 s ✓ Crayons 1.1 s ✓ ProgressLogging 1.1 s ✓ DelimitedFiles 1.2 s ✓ Requires 1.6 s ✓ ConcurrentUtilities 1.6 s ✓ MsgPack 2.5 s ✓ ProgressMeter 1.3 s ✓ Scratch 32.3 s ✓ Unitful 2.4 s ✓ SentinelArrays 1.9 s ✓ StructTypes 1.4 s ✓ LoggingExtras 1.8 s ✓ StructUtils 2.0 s ✓ PDMats 1.2 s ✓ Compat 1.4 s ✓ Preferences 1.2 s ✓ Hyperscript 1.8 s ✓ ExceptionUnwrapping 3.4 s ✓ SimpleTraits 0.8 s ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1.0 s ✓ WidgetsBase 1.3 s ✓ Measurements 0.8 s ✓ IntervalSets → IntervalSetsRandomExt 0.8 s ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 1.0 s ✓ BioGenerics 0.9 s ✓ CodecZlib 24.9 s ✓ TestItemRunner 1.5 s ✓ Statistics → SparseArraysExt 4.0 s ✓ FixedPointNumbers 0.8 s ✓ IntervalSets → IntervalSetsStatisticsExt 1.0 s ✓ Missings 1.1 s ✓ PooledArrays 1.1 s ✓ Quaternions 1.2 s ✓ InverseFunctions → InverseFunctionsDatesExt 1.8 s ✓ InverseFunctions → InverseFunctionsTestExt 4.1 s ✓ OpenSSL 0.8 s ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 0.9 s ✓ LeftChildRightSiblingTrees 1.7 s ✓ FillArrays → FillArraysSparseArraysExt 1.0 s ✓ FillArrays → FillArraysStatisticsExt 0.9 s ✓ RuntimeGeneratedFunctions 1.2 s ✓ Parameters 3.7 s ✓ DataStructures 0.8 s ✓ ADTypes → ADTypesConstructionBaseExt 2.0 s ✓ DifferentiationInterface 1.2 s ✓ Scanf 0.8 s ✓ TableTraits 1.0 s ✓ Adapt 1.6 s ✓ ConsoleProgressMonitor 1.5 s ✓ RelocatableFolders 2.4 s ✓ Unitful → ConstructionBaseUnitfulExt 2.7 s ✓ Unitful → PrintfExt 2.5 s ✓ Unitful → InverseFunctionsUnitfulExt 1.2 s ✓ StructUtils → StructUtilsStaticArraysCoreExt 1.8 s ✓ FillArrays → FillArraysPDMatsExt 0.9 s ✓ Compat → CompatLinearAlgebraExt 1.3 s ✓ PrecompileTools 1.8 s ✓ JLLWrappers 2.5 s ✓ TruncatedStacktraces 2.2 s ✓ SciMLLogging 3.1 s ✓ Setfield 2.5 s ✓ Measurements → MeasurementsUnitfulExt 1.2 s ✓ StructUtils → StructUtilsMeasurementsExt 2.9 s ✓ ColorTypes 5.5 s ✓ Accessors 1.8 s ✓ TerminalLoggers 9.8 s ✓ SparseConnectivityTracer 1.3 s ✓ SortingAlgorithms 1.6 s ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 2.0 s ✓ Tables 1.3 s ✓ ArrayInterface 1.4 s ✓ Adapt → AdaptSparseArraysExt 1.2 s ✓ GPUArraysCore 9.1 s ✓ UnitfulAtomic 2.5 s ✓ FilePathsBase 6.8 s ✓ Aqua 3.4 s ✓ BioSymbols 3.8 s ✓ StringManipulation 14.0 s ✓ StaticArrays 3.4 s ✓ RecipesBase 16.2 s ✓ Parsers 11.8 s ✓ SparseMatrixColorings 2.3 s ✓ EarCut_jll 2.1 s ✓ libinchi_jll 2.1 s ✓ coordgenlibs_jll 2.4 s ✓ L_BFGS_B_jll 2.3 s ✓ Deno_jll 2.4 s ✓ Libiconv_jll 2.4 s ✓ MbedTLS_jll 3.7 s ✓ FunctionWrappersWrappers 1.3 s ✓ ColorTypes → StyledStringsExt 8.5 s ✓ Colors 2.3 s ✓ Accessors → TestExt 2.7 s ✓ Accessors → IntervalSetsExt 2.8 s ✓ Accessors → LinearAlgebraExt 2.5 s ✓ Accessors → UnitfulExt 1.9 s ✓ DifferentiationInterface → DifferentiationInterfaceSparseConnectivityTracerExt 1.5 s ✓ TableOperations 1.3 s ✓ StructUtils → StructUtilsTablesExt 0.8 s ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1.9 s ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 2.3 s ✓ SciMLStructures 3.1 s ✓ PreallocationTools 0.9 s ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 0.9 s ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 22.1 s ✓ Mendeleev 3.1 s ✓ FilePathsBase → FilePathsBaseTestExt 1.3 s ✓ FilePathsBase → FilePathsBaseMmapExt 40.3 s ✓ PrettyTables 4.4 s ✓ ArnoldiMethod 1.9 s ✓ StaticArrays → StaticArraysStatisticsExt 1.9 s ✓ ConstructionBase → ConstructionBaseStaticArraysExt 2.1 s ✓ FillArrays → FillArraysStaticArraysExt 5.8 s ✓ Rotations 2.0 s ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1.8 s ✓ Adapt → AdaptStaticArraysExt 2.1 s ✓ Accessors → StaticArraysExt 2.6 s ✓ ThreadPools 1.8 s ✓ IntervalSets → IntervalSetsRecipesBaseExt 1.8 s ✓ Measurements → MeasurementsRecipesBaseExt 15.0 s ✓ BioStructures 15.2 s ✓ JSON3 8.6 s ✓ JSON 1.4 s ✓ InlineStrings → ParsersExt 2.5 s ✓ DifferentiationInterface → DifferentiationInterfaceSparseMatrixColoringsExt 22.3 s ✓ GeometryBasics 1.4 s ✓ LBFGSB 1.5 s ✓ StringEncodings 2.7 s ✓ MbedTLS 3.7 s ✓ SparseMatrixColorings → SparseMatrixColoringsColorsExt 7.7 s ✓ Roots 5.3 s ✓ SciMLOperators 4.2 s ✓ SymbolicIndexingInterface 2.5 s ✓ PreallocationTools → PreallocationToolsSparseConnectivityTracerExt 86.5 s ✓ DataFrames 11.0 s ✓ Graphs 25.9 s ✓ CellListMap 2.5 s ✓ Rotations → RotationsRecipesBaseExt 3.6 s ✓ WeakRefStrings 9.2 s ✓ MakieCore 3.2 s ✓ YAML 27.0 s ✓ HTTP 2.8 s ✓ Roots → RootsUnitfulExt 1.4 s ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 2.2 s ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 4.3 s ✓ SymbolicIndexingInterface → SymbolicIndexingInterfacePrettyTablesExt 9.5 s ✓ RecursiveArrayTools 9.0 s ✓ BioStructures → BioStructuresDataFramesExt 3.9 s ✓ MetaGraphs 27.6 s ✓ CSV 24.6 s ✓ MolecularGraph 10.9 s ✓ Bonito 17.3 s ✓ PhysicalConstants 2.4 s ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 1.7 s ✓ RecursiveArrayTools → RecursiveArrayToolsTablesExt 1.7 s ✓ RecursiveArrayTools → RecursiveArrayToolsStatisticsExt 1.7 s ✓ RecursiveArrayTools → RecursiveArrayToolsMeasurementsExt 4.2 s ✓ BioStructures → BioStructuresGraphsExt 17.6 s ✓ SciMLBase 2.8 s ✓ SciMLBase → SciMLBaseMeasurementsExt 3.0 s ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt 9.2 s ✓ OptimizationBase 5.6 s ✓ Optimization 6.0 s ✓ OptimizationLBFGSB 60.0 s ✓ BiochemicalAlgorithms 38.6 s ✓ BiochemicalVisualization 208 dependencies successfully precompiled in 983 seconds. 38 already precompiled. Precompilation completed after 1006.42s ################################################################################ # Testing # Testing BiochemicalVisualization Status `/tmp/jl_3H5Ai4/Project.toml` [4c88cf16] Aqua v0.8.14 [9d651bdf] BiochemicalAlgorithms v0.6.9 [00dfb448] BiochemicalVisualization v0.3.4 [824d6782] Bonito v4.2.0 [5ae59095] Colors v0.13.1 [5c1252a2] GeometryBasics v0.5.10 [99f44e22] MsgPack v1.2.1 [10745b16] Statistics v1.11.1 [f8b46487] TestItemRunner v1.1.5 [37e2e46d] LinearAlgebra v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_3H5Ai4/Manifest.toml` [47edcb42] ADTypes v1.22.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.44 [79e6a3ab] Adapt v4.5.2 [4c88cf16] Aqua v0.8.14 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.24.0 [15f4f7f2] AutoHashEquals v2.2.0 [47718e42] BioGenerics v0.1.5 [de9282ab] BioStructures v4.7.1 [3c28c6f8] BioSymbols v5.2.0 [9d651bdf] BiochemicalAlgorithms v0.6.9 [00dfb448] BiochemicalVisualization v0.3.4 [d1d4a3ce] BitFlags v0.1.9 [824d6782] Bonito v4.2.0 [e1450e63] BufferedStreams v1.2.2 [336ed68f] CSV v0.10.16 [49dc2e85] Calculus v0.5.2 [69e1c6dd] CellListMap v0.9.17 [ae650224] ChunkSplitters v3.2.0 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [38540f10] CommonSolve v0.2.6 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities v2.5.1 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.4 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [a0c0ee7d] DifferentiationInterface v0.7.17 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.7 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 [411431e0] Extents v0.1.6 [9aa1b823] FastClosures v0.3.2 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v1.8.0 [46192b85] GPUArraysCore v0.2.0 [5c1252a2] GeometryBasics v0.5.10 [86223c79] Graphs v1.14.0 [cd3eb016] HTTP v1.11.0 [47d2ed2b] Hyperscript v0.0.5 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [8197267c] IntervalSets v0.7.14 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.5.2 [0f8b85d8] JSON3 v1.14.3 [5be7bae1] LBFGSB v0.4.1 [b964fa9f] LaTeXStrings v1.4.0 [1d6d02ad] LeftChildRightSiblingTrees v0.2.1 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [20f20a25] MakieCore v0.10.0 [739be429] MbedTLS v1.1.10 [eff96d63] Measurements v2.14.1 [c116f080] Mendeleev v1.0.2 [626554b9] MetaGraphs v0.9.0 [e1d29d7a] Missings v1.2.0 [6c89ec66] MolecularGraph v0.22.0 [99f44e22] MsgPack v1.2.1 [510215fc] Observables v0.5.5 [4d8831e6] OpenSSL v1.6.1 [7f7a1694] Optimization v5.5.1 [bca83a33] OptimizationBase v5.1.1 [22f7324a] OptimizationLBFGSB v1.4.1 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.4 [5ad8b20f] PhysicalConstants v0.2.5 [2dfb63ee] PooledArrays v1.4.3 [d236fae5] PreallocationTools v1.2.0 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [33c8b6b6] ProgressLogging v0.1.6 [92933f4c] ProgressMeter v1.11.0 [94ee1d12] Quaternions v0.7.7 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v4.3.0 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [f2b01f46] Roots v3.0.0 [6038ab10] Rotations v1.7.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.18 [6ef1bc8b] Scanf v0.5.4 [0bca4576] SciMLBase v3.7.1 ⌅ [a6db7da4] SciMLLogging v1.9.1 [c0aeaf25] SciMLOperators v1.18.0 [431bcebd] SciMLPublic v1.0.1 [53ae85a6] SciMLStructures v1.10.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [efcf1570] Setfield v1.1.2 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [9f842d2f] SparseConnectivityTracer v1.2.1 [0a514795] SparseMatrixColorings v0.4.27 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.4 [856f2bd8] StructTypes v1.11.0 [ec057cc2] StructUtils v2.8.1 [2efcf032] SymbolicIndexingInterface v0.3.46 [ab02a1b2] TableOperations v1.2.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [5d786b92] TerminalLoggers v0.1.7 [f8b46487] TestItemRunner v1.1.5 [1c621080] TestItems v1.0.0 [b189fb0b] ThreadPools v2.1.1 [3bb67fe8] TranscodingStreams v0.11.3 [781d530d] TruncatedStacktraces v1.4.0 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [1986cc42] Unitful v1.28.0 [a7773ee8] UnitfulAtomic v1.0.0 [ea10d353] WeakRefStrings v1.4.3 [eead4739] WidgetsBase v0.1.4 [76eceee3] WorkerUtilities v1.6.1 [ddb6d928] YAML v0.4.16 ⌅ [04572ae6] Deno_jll v1.33.4+0 [5ae413db] EarCut_jll v2.2.4+0 [81d17ec3] L_BFGS_B_jll v3.0.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [f6050b86] coordgenlibs_jll v3.0.2+0 [172afb32] libinchi_jll v1.6.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] LibCURL_jll v8.19.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2026.3.19 [4536629a] OpenBLAS_jll v0.3.33+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time Package | 11 11 4m23.9s test/aqua.jl | 11 11 4m23.9s Aqua | 11 11 4m23.9s Method ambiguity | 1 1 44.8s Unbound type parameters | 1 1 0.2s Undefined exports | 1 1 0.0s Compare Project.toml and test/Project.toml | 1 1 0.0s Stale dependencies | 1 1 40.9s Compat bounds | 4 4 0.7s Piracy | 1 1 0.2s Persistent tasks | 1 1 1m51.2s Testing BiochemicalVisualization tests passed Testing completed after 318.2s PkgEval succeeded after 1398.31s