Package evaluation to test AIBECS on Julia 1.14.0-DEV.2114 (cccbcd9611*) started at 2026-05-05T15:18:58.456 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.31s ################################################################################ # Installation # Installing AIBECS... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [ace601d6] + AIBECS v0.16.7 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.22.0 [ace601d6] + AIBECS v0.16.7 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.5.2 [4fba245c] + ArrayInterface v7.24.0 [13072b0f] + AxisAlgorithms v1.1.0 [d1d4a3ce] + BitFlags v0.1.9 [d360d2e6] + ChainRulesCore v1.26.1 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.1 [187b0558] + ConstructionBase v1.6.0 [124859b0] + DataDeps v0.7.13 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.7 [460bff9d] + ExceptionUnwrapping v0.1.11 [e2ba6199] + ExprTools v0.1.10 [bf96fef3] + FieldMetadata v0.3.1 [4c728ea3] + Flatten v0.4.3 [f6369f11] + ForwardDiff v1.3.3 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v1.8.0 [46192b85] + GPUArraysCore v0.2.0 [cd3eb016] + HTTP v1.11.0 [a3d749fb] + Inpaintings v0.3.1 [a98d9a8b] + Interpolations v0.16.2 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [6ac74813] + MD5 v0.2.3 [1914dd2f] + MacroTools v0.5.16 [7eb4fadd] + Match v2.4.1 [739be429] + MbedTLS v1.1.10 [49441bc9] + MetadataArrays v0.1.1 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.27 [cfe838f4] + OceanGrids v0.4.7 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.6.1 [bac558e1] + OrderedCollections v1.8.1 [d236fae5] + PreallocationTools v1.2.0 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v4.3.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.18 [0bca4576] + SciMLBase v3.7.1 ⌅ [a6db7da4] + SciMLLogging v1.9.1 [c0aeaf25] + SciMLOperators v1.18.0 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.10.0 [6c6a2e73] + Scratch v1.3.0 [777ac1f9] + SimpleBufferStream v1.2.0 [276daf66] + SpecialFunctions v2.7.2 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2efcf032] + SymbolicIndexingInterface v0.3.46 [3bb67fe8] + TranscodingStreams v0.11.3 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.28.0 [efce3f68] + WoodburyMatrices v1.1.0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] + LibCURL_jll v8.19.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2026.3.19 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.83s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 15.1 s ✓ AIBECS 37.6 s ✓ WorldOceanAtlasTools 11.7 s ✓ AIBECS → AIBECSBijectorsExt 16.1 s ✓ AIBECS → AIBECSNCDatasetsExt 17.9 s ✓ AIBECS → AIBECSDataFramesExt 12.3 s ✓ AIBECS → AIBECSRecipesParametersExt 11.0 s ✓ AIBECS → AIBECSRecipesBaseExt 16.6 s ✓ AIBECS → AIBECSJLD2Ext 13.4 s ✓ AIBECS → AIBECSDistributionsExt 18.7 s ✓ AIBECS → AIBECSETOPOExt 18.7 s ✓ AIBECS → AIBECSOCIM2_48LExt 19.6 s ✓ AIBECS → AIBECSShapefileExt 12 dependencies successfully precompiled in 226 seconds. 414 already precompiled. Precompilation completed after 245.38s ################################################################################ # Testing # Testing AIBECS Status `/tmp/jl_uFCURc/Project.toml` [ace601d6] AIBECS v0.16.7 [76274a88] Bijectors v0.15.24 [124859b0] DataDeps v0.7.13 [a93c6f00] DataFrames v1.8.2 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.125 [fa6b7ba4] DualNumbers v0.6.9 [bf96fef3] FieldMetadata v0.3.1 [4c728ea3] Flatten v0.4.3 [f6369f11] ForwardDiff v1.3.3 [a98d9a8b] Interpolations v0.16.2 [033835bb] JLD2 v0.6.4 [23992714] MAT v0.12.0 [6ac74813] MD5 v0.2.3 [49441bc9] MetadataArrays v0.1.1 [85f8d34a] NCDatasets v0.14.15 [cfe838f4] OceanGrids v0.4.7 [91a5bcdd] Plots v1.41.6 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [0bca4576] SciMLBase v3.7.1 [8e980c4a] Shapefile v0.13.3 [3a884ed6] UnPack v1.0.2 [1986cc42] Unitful v1.28.0 [04f20302] WorldOceanAtlasTools v0.6.4 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [37e2e46d] LinearAlgebra v1.13.0 [de0858da] Printf v1.11.0 [2f01184e] SparseArrays v1.13.0 [4607b0f0] SuiteSparse [8dfed614] Test v1.11.0 Status `/tmp/jl_uFCURc/Manifest.toml` [47edcb42] ADTypes v1.22.0 [ace601d6] AIBECS v0.16.7 [80f14c24] AbstractMCMC v5.15.1 [7a57a42e] AbstractPPL v0.14.2 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.44 [79e6a3ab] Adapt v4.5.2 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [4fba245c] ArrayInterface v7.24.0 [13072b0f] AxisAlgorithms v1.1.0 [198e06fe] BangBang v0.4.9 [76274a88] Bijectors v0.15.24 [d1d4a3ce] BitFlags v0.1.9 [179af706] CFTime v0.2.8 [49dc2e85] Calculus v0.5.2 [d360d2e6] ChainRulesCore v1.26.1 [9e997f8a] ChangesOfVariables v0.1.10 [0b6fb165] ChunkCodecCore v1.0.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [1fbeeb36] CommonDataModel v0.4.3 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities v2.5.1 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [a8cc5b0e] Crayons v4.1.1 [75c7ada1] DBFTables v1.2.7 [9a962f9c] DataAPI v1.16.0 [124859b0] DataDeps v0.7.13 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.4 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [b429d917] DensityInterface v0.4.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.17 [3c3547ce] DiskArrays v0.4.19 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.125 [ffbed154] DocStringExtensions v0.9.5 [fa6b7ba4] DualNumbers v0.6.9 [4e289a0a] EnumX v1.0.7 [f151be2c] EnzymeCore v0.8.20 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 [411431e0] Extents v0.1.6 [c87230d0] FFMPEG v0.4.5 [bf96fef3] FieldMetadata v0.3.1 [5789e2e9] FileIO v1.19.0 [1a297f60] FillArrays v1.16.0 [53c48c17] FixedPointNumbers v0.8.5 [4c728ea3] Flatten v0.4.3 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.3.3 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v1.8.0 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [28b8d3ca] GR v0.73.24 [68eda718] GeoFormatTypes v0.4.5 [cf35fbd7] GeoInterface v1.6.1 [42e2da0e] Grisu v1.0.2 [f67ccb44] HDF5 v0.17.3 [cd3eb016] HTTP v1.11.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.5 [a3d749fb] Inpaintings v0.3.1 [a98d9a8b] Interpolations v0.16.2 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.6.4 [1019f520] JLFzf v0.1.11 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.5.2 [8ac3fa9e] LRUCache v1.6.2 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.10 [1d6d02ad] LeftChildRightSiblingTrees v0.2.1 [6fdf6af0] LogDensityProblems v2.2.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [23992714] MAT v0.12.0 [6ac74813] MD5 v0.2.3 [3da0fdf6] MPIPreferences v0.1.12 [1914dd2f] MacroTools v0.5.16 [dbb5928d] MappedArrays v0.4.3 [7eb4fadd] Match v2.4.1 [739be429] MbedTLS v1.1.10 [442fdcdd] Measures v0.3.3 [49441bc9] MetadataArrays v0.1.1 [e1d29d7a] Missings v1.2.0 [85f8d34a] NCDatasets v0.14.15 [77ba4419] NaNMath v1.1.3 [b8a86587] NearestNeighbors v0.4.27 [cfe838f4] OceanGrids v0.4.7 [6fe1bfb0] OffsetArrays v1.17.0 [4d8831e6] OpenSSL v1.6.1 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.4 [ccf2f8ad] PlotThemes v3.3.0 [995b91a9] PlotUtils v1.4.4 [91a5bcdd] Plots v1.41.6 [2dfb63ee] PooledArrays v1.4.3 [d236fae5] PreallocationTools v1.2.0 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [33c8b6b6] ProgressLogging v0.1.6 [92933f4c] 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Testing Running tests... 7-Zip (a) 26.00 (x64) : Copyright (c) 1999-2026 Igor Pavlov : 2026-02-12 64-bit locale=C.UTF-8 Threads:128 OPEN_MAX:1024, ASM Extracting archive: -- Path = Type = tar Code Page = UTF-8 Characteristics = ASCII Everything is Ok Files: 6 Size: 1142803650 Compressed: 7168 ┌ Info: You are about to use the OCIM2_48L model. │ If you use it for research, please cite: │ │ - Holzer, M., DeVries, T. & de Lavergne, C. Diffusion controls the ventilation of a Pacific Shadow Zone above abyssal overturning. Nat Commun 12, 4348 (2021). https://doi.org/10.1038/s41467-021-24648-x │ - DeVries, T., & Holzer, M. (2019). Radiocarbon and helium isotope constraints on deep ocean ventilation and mantle-3He sources. Journal of Geophysical Research: Oceans, 124, 3036–3057. https://doi.org/10.1029/2018JC014716 │ │ │ You can find the corresponding BibTeX entries in the CITATION.bib file │ at the root of the AIBECS.jl package repository. └ (Look for the "DeVries_Holzer_2019" and "Holzer_etal_2021" keys.) Divergence timescale: 21.61215986517385 Myr Mass conservation timescale: 7.675266273608991e6 Myr Test Summary: | Pass Total Time test setup.jl only | 17 17 2m16.4s ┌ Info: You are about to use the OCIM1_CTL model. │ If you use it for research, please cite: │ │ - DeVries, T., 2014: The oceanic anthropogenic CO2 sink: Storage, air‐sea fluxes, and transports over the industrial era, Global Biogeochem. Cycles, 28, 631–647, doi:10.1002/2013GB004739. │ - DeVries, T. and F. Primeau, 2011: Dynamically and Observationally Constrained Estimates of Water-Mass Distributions and Ages in the Global Ocean. J. Phys. Oceanogr., 41, 2381–2401, doi:10.1175/JPO-D-10-05011.1 │ │ │ You can find the corresponding BibTeX entries in the CITATION.bib file │ at the root of the AIBECS.jl package repository. └ (Look for the "DeVries_Primeau_2011" and "DeVries_2014" keys.) Divergence timescale: 56.88633505066291 Myr Mass conservation timescale: 1.6399762430792455e7 Myr Test Summary: | Pass Total Time test setup.jl only | 17 17 1m31.9s ┌ Info: You are about to use the OCIM0.1 model. │ If you use it for research, please cite: │ │ - - Primeau, F. W., Holzer, M., and DeVries, T. (2013), Southern Ocean nutrient trapping and the efficiency of the biological pump, J. Geophys. Res. Oceans, 118, 2547–2564, doi:10.1002/jgrc.20181. │ - DeVries, T. and F. Primeau, 2011: Dynamically and Observationally Constrained Estimates of Water-Mass Distributions and Ages in the Global Ocean. J. Phys. Oceanogr., 41, 2381–2401, doi:10.1175/JPO-D-10-05011.1 │ │ │ You can find the corresponding BibTeX entries in the CITATION.bib file │ at the root of the AIBECS.jl package repository. └ (Look for the "DeVries_Primeau_2011" and "Primeau_etal_2013" keys.) Divergence timescale: 4918.412202633426 Myr Mass conservation timescale: 1.3107440710695875e9 Myr Test Summary: | Pass Total Time test setup.jl only | 17 17 8.9s ┌ Info: You are about to use the OCCA model. │ If you use it for research, please cite: │ │ - Forget, G., 2010: Mapping Ocean Observations in a Dynamical Framework: A 2004–06 Ocean Atlas. J. Phys. Oceanogr., 40, 1201–1221, https://doi.org/10.1175/2009JPO4043.1 │ │ You can find the corresponding BibTeX entries in the CITATION.bib file │ at the root of the AIBECS.jl package repository. └ (Look for the "Forget_2010" key.) Divergence timescale: 1.7451675993471023e7 Myr Mass conservation timescale: 0.07893326563274981 Myr Test Summary: | Pass Total Time test setup.jl only | 17 17 8.3s ┌ Info: You are about to use the OCIM2_CTL_He model. │ If you use it for research, please cite: │ │ DeVries, T., & Holzer, M. (2019). Radiocarbon and helium isotope constraints on deep ocean ventilation and mantle‐³He sources. Journal of Geophysical Research: Oceans, 124, 3036–3057. https://doi.org/10.1029/2018JC014716" │ │ │ You can find the corresponding BibTeX entries in the CITATION.bib file │ at the root of the AIBECS.jl package repository. └ (Look for the "DeVries_Holzer_2019" key.) Divergence timescale: 56.82128130650262 Myr Mass conservation timescale: 1.6417563680710558e7 Myr ┌ Info: You are about to use the Chien et al. (2016) data for aeolian deposition. │ If you use it for research, please cite: │ │ - Chien, C.-T., K. R. M. Mackey, S. Dutkiewicz, N. M. Mahowald, J. M. Prospero, and A. Paytan (2016), Effects of African dust deposition on phytoplankton in the western tropical Atlantic Ocean off Barbados, Global Biogeochem. Cycles, 30, doi:10.1002/2015GB005334. │ │ You can find the corresponding BibTeX entries in the CITATION.bib file │ at the root of the AIBECS.jl package repository. └ (Look for the Chien_etal_2016 key.) ┌ Info: You are about to use the Dai and Trenberth river discharge dataset. │ If you use it for research, please cite: │ │ - For the dataset itself: Dai, A. 2017. Dai and Trenberth Global River Flow and Continental Discharge Dataset. Research Data Archive at the National Center for Atmospheric Research, Computational and Information Systems Laboratory. https://doi.org/10.5065/D6V69H1T. │ - For the formal publication that describe the dataset: Dai, A., and K. E. Trenberth, 2002: Estimates of freshwater discharge from continents: Latitudinal and seasonal variations. J. Hydrometeorol., 3, 660–687. │ - For descriptions of updates to the dataset: │ - Dai, A., T. Qian, K. E. Trenberth, and J. D Milliman, 2009: Changes in continental freshwater discharge from 1948-2004. J. Climate, 22, 2773–2791. │ - Dai, A., 2016: Historical and future changes in streamflow and continental runoff: A review, in Terrestrial Water Cycle and Climate Change: Natural and Human-Induced Impacts, Geophysical Monograph 221. Ed. Qiuhong Tang and Taikan Oki, AGU, John Wiley & Sons, 17–37 (DOI: 10.1002/9781118971772). │ │ │ You can find the corresponding BibTeX entries in the CITATION.bib file │ at the root of the AIBECS.jl package repository. └ (Look for the "Dai_2017", "Dai_Trenberth_2002", "Dai_etal_2009", and "Dai_2016" keys.) 7-Zip (a) 26.00 (x64) : Copyright (c) 1999-2026 Igor Pavlov : 2026-02-12 64-bit locale=C.UTF-8 Threads:128 OPEN_MAX:1024, ASM Scanning the drive for archives: 1 file, 31784239 bytes (31 MiB) Extracting archive: /home/pkgeval/.julia/scratchspaces/124859b0-ceae-595e-8997-d05f6a7a8dfe/datadeps/groundwater_discharge/41467_2020_15064_MOESM8_ESM.zip -- Path = /home/pkgeval/.julia/scratchspaces/124859b0-ceae-595e-8997-d05f6a7a8dfe/datadeps/groundwater_discharge/41467_2020_15064_MOESM8_ESM.zip Type = zip Physical Size = 31784239 Everything is Ok Folders: 1 Files: 5 Size: 137157916 Compressed: 31784239 ┌ Info: You are about to use the groundwater discharge data set. │ If you use it for research, please cite: │ │ - Luijendijk, E., Gleeson, T. & Moosdorf, N. Fresh groundwater discharge insignificant for the world’s oceans but important for coastal ecosystems. Nat Commun 11, 1260 (2020). doi:10.1038/s41467-020-15064-8 │ - Luijendijk, Elco; Gleeson, Tom; Moosdorf, Nils (2019): Geospatial data and model results for a global model study of coastal groundwater discharge. PANGAEA, doi:10.1594/PANGAEA.907641 │ │ │ You can find the corresponding BibTeX entries in the CITATION.bib file │ at the root of the AIBECS.jl package repository. └ (Look for the "Luijendijk_etal_2019" and "Luijendijk_etal_2020" keys.) Test Summary: | Pass Total Time Test setup, plots, and sources | 79 79 2m06.1s WARNING: Method definition gradlogpdf(Distributions.Uniform{T} where T<:Real, T) where {T<:Real} in module Distributions at /home/pkgeval/.julia/packages/Distributions/PVuFU/src/univariate/continuous/uniform.jl:86 overwritten in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/parameters.jl:39. TestParameters{Float64} xgeo = 2.17 (mmol m^-3) τgeo = 1.0 (Myr) k = 10.0 (μmol m^-3) w₀ = 1.0 (m d^-1) w′ = 0.22 (d^-1) τDOP = 0.25 (yr) τPOP = 5.25 (d) σ = 0.3333333333333333 () τDIP = 30.0 (d) TestParameters{Dual128} xgeo = 2.17 + 1.0ɛ (mmol m^-3) τgeo = 1.0 + 0.0ɛ (Myr) k = 10.0 + 1.0ɛ (μmol m^-3) w₀ = 1.0 + 1.0ɛ (m d^-1) w′ = 0.22 + 1.0ɛ (d^-1) τDOP = 0.25 + 1.0ɛ (yr) τPOP = 5.25 + 1.0ɛ (d) σ = 0.3333333333333333 + 1.0ɛ () τDIP = 30.0 + 1.0ɛ (d) \begin{tabular}{r|ccccccc} & Symbol & Value & Initial value & Unit & Prior & Description & Optimizable\\ \hline & Symbol & Float64 & Float64 & FreeUnit… & Union… & String & Bool\\ \hline 1 & xgeo & 2.17 & 2.17 & mmol m\^-3 & LogNormal\{Float64\}(μ=0.774727, σ=1.0) & Geological mean P concentration & 1 \\ 2 & τgeo & 1.0 & 1.0 & Myr & & Geological restoring timescale & 0 \\ 3 & k & 10.0 & 10.0 & μmol m\^-3 & LogNormal\{Float64\}(μ=2.30259, σ=1.0) & Half-saturation constant (Michaelis-Menten) & 1 \\ 4 & w₀ & 1.0 & 1.0 & m d\^-1 & LogNormal\{Float64\}(μ=0.0, σ=1.0) & Sinking velocity at surface & 1 \\ 5 & w′ & 0.22 & 0.22 & d\^-1 & Normal\{Float64\}(μ=0.22, σ=10.0) & Vertical gradient of sinking velocity & 1 \\ 6 & τDOP & 0.25 & 0.25 & yr & LogNormal\{Float64\}(μ=-1.38629, σ=1.0) & Remineralization timescale (DOP to DIP) & 1 \\ 7 & τPOP & 5.25 & 5.25 & d & LogNormal\{Float64\}(μ=1.65823, σ=1.0) & Dissolution timescale (POP to DOP) & 1 \\ 8 & σ & 0.333333 & 0.333333 & & LocationScale\{Int64, Continuous, LogitNormal\{Float64\}\}(\textbackslash{}nμ: 0\textbackslash{}nσ: 1\textbackslash{}nρ: LogitNormal\{Float64\}(μ=0.0, σ=1.0)\textbackslash{}n)\textbackslash{}n & Fraction of quick local uptake recycling & 1 \\ 9 & τDIP & 30.0 & 30.0 & d & LogNormal\{Float64\}(μ=3.4012, σ=1.0) & Uptake maximum timescale (DIP to POP) & 1 \\ \end{tabular} 14 Test Summary: | Pass Total Time Parameters | 55 55 21.9s Creating François Primeau's 2x2x2 model ✔ Divergence timescale: 2.2842804373910645e11 Myr Mass conservation timescale: 1.3724303621028665e12 Myr Registering World Ocean Atlas data with DataDeps ┌ Warning: You are about to use World Ocean Atlas data 18. │ │ Please cite the following corresponding reference(s): │ Garcia et al. (2018), World Ocean Atlas 2018, Volume 4: Dissolved Inorganic Nutrients (phosphate, nitrate and nitrate+nitrite, silicate). A. Mishonov Technical Ed.; in preparation.) └ @ WorldOceanAtlasTools ~/.julia/packages/WorldOceanAtlasTools/cs0qq/src/functions.jl:223 ┌ Warning: Checksum not provided, add to the Datadep Registration the following hash line │ hash = "53a32321db4115a939f50c8d767f0df4e7263117e4afc8fd98ca861f67223eec" └ @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/verification.jl:44 Reading NetCDF file Rearranging data Filtering data Averaging data over each grid box Setting μ = 0 and σ² = ∞ where no obs Setting a realistic minimum for σ² Test Summary: | Pass Total Time test everything | 64 64 2m38.2s Creating 2-box model ✔ ┌ Info: You are about to use the 2-box model of Sarmiento and Gruber [2006]. │ If you use it for research, please cite: │ │ - Sarmiento, Jorge L., and Nicolas Gruber. Ocean biogeochemical dynamics. Princeton University Press, 2006. │ │ You can find the corresponding BibTeX entry in the CITATION.bib file │ at the root of the AIBECS.jl package repository. └ (Look for the "Sarmiento_Gruber_2006" key.) Divergence timescale: Inf Myr Mass conservation timescale: 2.3812624723226082e13 Myr WARNING: Method definition T_D(Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition T_POP(Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:7 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition geores(Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:17 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition relu(Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:22 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition uptake(Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:23 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition remineralization(Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:29 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition dissolution(Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:34 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition sms_DIP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:39 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition sms_DOP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:42 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition sms_POP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:46 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition NL_DIP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:61 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition L_DIP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:62 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition NL_DOP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:64 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition L_DOP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:68 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition NL_POP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:70 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition L_POP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:74 overwritten on the same line (check for duplicate calls to `include`). Registering World Ocean Atlas data with DataDeps ┌ Warning: You are about to use World Ocean Atlas data 18. │ │ Please cite the following corresponding reference(s): │ Garcia et al. (2018), World Ocean Atlas 2018, Volume 4: Dissolved Inorganic Nutrients (phosphate, nitrate and nitrate+nitrite, silicate). A. Mishonov Technical Ed.; in preparation.) └ @ WorldOceanAtlasTools ~/.julia/packages/WorldOceanAtlasTools/cs0qq/src/functions.jl:223 ┌ Warning: Over-writing registration of the datadep │ name = "WOA18_Annual_phosphate_360x180" └ @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/registration.jl:15 Reading NetCDF file Rearranging data Filtering data Averaging data over each grid box Setting μ = 0 and σ² = ∞ where no obs Setting a realistic minimum for σ² WARNING: Method definition δconvert(Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/cost_functions.jl:9 overwritten on the same line (check for duplicate calls to `include`). Test Summary: | Pass Total Time test everything | 64 64 55.0s Creating 6-box model ✔ ┌ Info: You are about to use the 3-box model of Archer et al. [2000]. │ If you use it for research, please cite: │ │ - Archer, D. E., Eshel, G., Winguth, A., Broecker, W., Pierrehumbert, R., Tobis, M., and Jacob, R. (2000), Atmospheric pCO2 sensitivity to the biological pump in the ocean, Global Biogeochem. Cycles, 14 (4), 1219–1230, doi:10.1029/1999GB001216. │ │ You can find the corresponding BibTeX entry in the CITATION.bib file │ at the root of the AIBECS.jl package repository. │ (Look for the "Archer_etal_2000" key.) │ │ Note that although this model represents the 3-box model of Archer et al. [2000], │ it effectively requires 6 boxes to represent in the AIBECS, │ so that particulate sinking flux divergence operators can be built. └ (See the comments at the start of the Archer_etal_2000.jl file for details.) Divergence timescale: 2.0980406861036396e10 Myr Mass conservation timescale: 1.9132521493711224e10 Myr WARNING: Method definition T_D(Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition T_POP(Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:7 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition geores(Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:17 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition relu(Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:22 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition uptake(Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:23 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition remineralization(Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:29 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition dissolution(Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:34 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition sms_DIP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:39 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition sms_DOP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:42 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition sms_POP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:46 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition NL_DIP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:61 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition L_DIP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:62 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition NL_DOP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:64 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition L_DOP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:68 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition NL_POP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:70 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition L_POP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:74 overwritten on the same line (check for duplicate calls to `include`). Registering World Ocean Atlas data with DataDeps ┌ Warning: You are about to use World Ocean Atlas data 18. │ │ Please cite the following corresponding reference(s): │ Garcia et al. (2018), World Ocean Atlas 2018, Volume 4: Dissolved Inorganic Nutrients (phosphate, nitrate and nitrate+nitrite, silicate). A. Mishonov Technical Ed.; in preparation.) └ @ WorldOceanAtlasTools ~/.julia/packages/WorldOceanAtlasTools/cs0qq/src/functions.jl:223 ┌ Warning: Over-writing registration of the datadep │ name = "WOA18_Annual_phosphate_360x180" └ @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/registration.jl:15 Reading NetCDF file Rearranging data Filtering data Averaging data over each grid box Setting μ = 0 and σ² = ∞ where no obs Setting a realistic minimum for σ² WARNING: Method definition δconvert(Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/cost_functions.jl:9 overwritten on the same line (check for duplicate calls to `include`). Test Summary: | Pass Total Time test everything | 64 64 1m01.5s Creating Haine and Hall (2002) 9-box model ✔ ┌ Info: You are about to use the 9-box pedagogical model of │ Haine and Hall (2002), as described in Figure 6 of the JAMES │ review paper by Haine et al. (2025). │ If you use it for research or teaching, please cite: │ │ - Haine, T. W. N., and T. M. Hall, 2002: A Generalized Transport Theory: │ Water-Mass Composition and Age. J. Phys. Oceanogr., 32, 1932–1946, │ https://doi.org/10.1175/1520-0485(2002)032<1932:AGTTWM>2.0.CO;2. │ │ - Haine, T. W. N., Griffies, S. M., Gebbie, G., & Jiang, W. (2025). │ A review of Green's function methods for tracer timescales and pathways │ in ocean models. Journal of Advances in Modeling Earth Systems, 17, e2024MS004637. │ https://doi.org/10.1029/2024MS004637 │ │ A reference Julia implementation is at │ https://github.com/ggebbie/OceanGreensFunctionMethods.jl with the following citation: │ │ - Gebbie, G., Haine, T. W. N., Griffies, S. M., Jiang, W., & Pasquier, B. (2024). │ OceanGreensFunctionMethods.jl: Julia software package with pedagogical └ box model (v1.0). Zenodo. https://doi.org/10.5281/zenodo.14533209. Divergence timescale: 2.1670586990164252e11 Myr Mass conservation timescale: 1.8759741103742212e11 Myr WARNING: Method definition T_D(Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition T_POP(Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:7 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition geores(Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:17 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition relu(Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:22 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition uptake(Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:23 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition remineralization(Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:29 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition dissolution(Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:34 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition sms_DIP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:39 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition sms_DOP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:42 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition sms_POP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:46 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition NL_DIP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:61 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition L_DIP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:62 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition NL_DOP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:64 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition L_DOP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:68 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition NL_POP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:70 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition L_POP(Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/bgc_functions.jl:74 overwritten on the same line (check for duplicate calls to `include`). Registering World Ocean Atlas data with DataDeps ┌ Warning: You are about to use World Ocean Atlas data 18. │ │ Please cite the following corresponding reference(s): │ Garcia et al. (2018), World Ocean Atlas 2018, Volume 4: Dissolved Inorganic Nutrients (phosphate, nitrate and nitrate+nitrite, silicate). A. Mishonov Technical Ed.; in preparation.) └ @ WorldOceanAtlasTools ~/.julia/packages/WorldOceanAtlasTools/cs0qq/src/functions.jl:223 ┌ Warning: Over-writing registration of the datadep │ name = "WOA18_Annual_phosphate_360x180" └ @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/registration.jl:15 Reading NetCDF file Rearranging data Filtering data Averaging data over each grid box Setting μ = 0 and σ² = ∞ where no obs Setting a realistic minimum for σ² WARNING: Method definition δconvert(Any) in module Main at /home/pkgeval/.julia/packages/AIBECS/Plw3A/test/cost_functions.jl:9 overwritten on the same line (check for duplicate calls to `include`). Test Summary: | Pass Total Time test everything | 64 64 1m04.8s ┌ Warning: Checksum not provided, add to the Datadep Registration the following hash line │ hash = "ca7cd829acf73fa93983c6936ecaa41e19e33fdbca69fca40234d90d5b4d06ca" └ @ DataDeps ~/.julia/packages/DataDeps/Y2lje/src/verification.jl:44 7-Zip (a) 26.00 (x64) : Copyright (c) 1999-2026 Igor Pavlov : 2026-02-12 64-bit locale=C.UTF-8 Threads:128 OPEN_MAX:1024, ASM Scanning the drive for archives: 1 file, 122869765 bytes (118 MiB) Extracting archive: /home/pkgeval/.julia/scratchspaces/124859b0-ceae-595e-8997-d05f6a7a8dfe/datadeps/AWESOME-OCIM/AWESOME-OCIM-master.zip -- Path = /home/pkgeval/.julia/scratchspaces/124859b0-ceae-595e-8997-d05f6a7a8dfe/datadeps/AWESOME-OCIM/AWESOME-OCIM-master.zip Type = zip Physical Size = 122869765 Comment = 5ee8953f291ae8100ede13f09858ec65e450a9f2 Everything is Ok Folders: 18 Files: 81 Size: 138153792 Compressed: 122869765 ┌ Info: You are about to download (and unpack) the AWESOME OCIM (AO) │ files as a zip file from GitHub and unpack them into: │ │ /home/pkgeval/.julia/scratchspaces/124859b0-ceae-595e-8997-d05f6a7a8dfe/datadeps/AWESOME-OCIM │ │ You can run │ │ tree /home/pkgeval/.julia/scratchspaces/124859b0-ceae-595e-8997-d05f6a7a8dfe/datadeps/AWESOME-OCIM │ │ (in shell mode) to check its contents. │ │ Please check with Seth John (sethjohn@usc.edu) for references │ to cite if you use the other data contained in the AO files, │ e.g., GEOTRACES, WOA, Weber and John, and so on. │ │ Also note that downloading files like this from GitHub is │ probably not very robust. However, some of the data files in │ the AO repository do not exist anywhere else officially, │ therefore this seems like the best solution at this stage. └ PRs welcome to improve this! Test Summary: | Pass Total Time test set | 1 1 8.0s Testing AIBECS tests passed Testing completed after 750.72s PkgEval succeeded after 1140.61s