Package evaluation of StateSpaceDynamics on Julia 1.11.5 (ca6e7bd5b0*) started at 2025-07-02T00:26:07.905 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 5.64s ################################################################################ # Installation # Installing StateSpaceDynamics... Resolving package versions... Installed StateSpaceDynamics ─ v0.1.1 Updating `~/.julia/environments/v1.11/Project.toml` [19cf8126] + StateSpaceDynamics v0.1.1 Updating `~/.julia/environments/v1.11/Manifest.toml` [47edcb42] + ADTypes v1.15.0 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.19.0 [4c555306] + ArrayLayouts v1.11.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.17.0 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.1 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 ⌅ [f6369f11] + ForwardDiff v0.10.38 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [d3d80556] + LineSearches v7.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [85a6dd25] + PositiveFactorizations v0.2.4 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [19cf8126] + StateSpaceDynamics v0.1.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3a884ed6] + UnPack v1.0.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building StateSpaceDynamics → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0ec6b0fe096ace18afbae1bd8cfc34fe6bef7436/build.log` Installation completed after 7.9s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 1978.4 ms ✓ TestEnv 1 dependency successfully precompiled in 2 seconds. 23 already precompiled. Precompiling package dependencies... Precompilation completed after 367.96s ################################################################################ # Testing # Testing StateSpaceDynamics Status `/tmp/jl_vipLQ2/Project.toml` [4c88cf16] Aqua v0.8.13 [336ed68f] CSV v0.10.15 [a2441757] Coverage v1.6.1 [a93c6f00] DataFrames v1.7.0 [31c24e10] Distributions v0.25.120 ⌅ [f6369f11] ForwardDiff v0.10.38 [98e50ef6] JuliaFormatter v2.1.2 [23992714] MAT v0.10.7 [429524aa] Optim v1.13.2 [276daf66] SpecialFunctions v2.5.1 [19cf8126] StateSpaceDynamics v0.1.1 [4c63d2b9] StatsFuns v1.5.0 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_vipLQ2/Manifest.toml` [47edcb42] ADTypes v1.15.0 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.13 [4fba245c] ArrayInterface v7.19.0 [4c555306] ArrayLayouts v1.11.1 [d1d4a3ce] BitFlags v0.1.9 [e1450e63] BufferedStreams v1.2.2 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [a80b9123] CommonMark v0.9.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.17.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [a2441757] Coverage v1.6.1 [c36e975a] CoverageTools v1.3.2 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.1 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 ⌅ [f6369f11] ForwardDiff v0.10.38 [c27321d9] Glob v1.3.1 [f67ccb44] HDF5 v0.17.2 [cd3eb016] HTTP v1.10.17 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.4 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [98e50ef6] JuliaFormatter v2.1.2 ⌅ [70703baa] JuliaSyntax v0.4.10 [b964fa9f] LaTeXStrings v1.4.0 [d3d80556] LineSearches v7.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [23992714] MAT v0.10.7 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [4d8831e6] OpenSSL v1.5.0 [429524aa] Optim v1.13.2 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [19cf8126] StateSpaceDynamics v0.1.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.1+0 [7cb0a576] MPICH_jll v4.3.1+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.8+0 [458c3c95] OpenSSL_jll v3.5.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [477f73a3] libaec_jll v1.1.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time Package Wide Tests | 11 11 28.4s Test Summary: | Pass Total Time SLDS Tests | 4062 4062 1m28.8s Fitting LDS via EM... 10%|█████ | ETA: 0:00:01 (10.23 ms/it) Fitting LDS via EM... 100%|██████████████████████████████████████████████████| Time: 0:00:01 (15.91 ms/it) Fitting LDS via EM... 9%|████▌ | ETA: 0:00:01 (11.37 ms/it) Fitting LDS via EM... 17%|████████▌ | ETA: 0:00:01 (12.36 ms/it) Fitting LDS via EM... 24%|████████████ | ETA: 0:00:01 (13.51 ms/it) Fitting LDS via EM... 33%|████████████████▌ | ETA: 0:00:01 (12.98 ms/it) Fitting LDS via EM... 42%|█████████████████████ | ETA: 0:00:01 (12.67 ms/it) Fitting LDS via EM... 51%|█████████████████████████▌ | ETA: 0:00:01 (12.78 ms/it) Fitting LDS via EM... 60%|██████████████████████████████ | ETA: 0:00:01 (12.60 ms/it) Fitting LDS via EM... 69%|██████████████████████████████████▌ | ETA: 0:00:00 (12.67 ms/it) Fitting LDS via EM... 78%|███████████████████████████████████████ | ETA: 0:00:00 (12.52 ms/it) Fitting LDS via EM... 87%|███████████████████████████████████████████▌ | ETA: 0:00:00 (12.59 ms/it) Fitting LDS via EM... 96%|████████████████████████████████████████████████ | ETA: 0:00:00 (12.61 ms/it) Fitting LDS via EM... 100%|██████████████████████████████████████████████████| Time: 0:00:01 (12.58 ms/it) Test Summary: | Pass Total Time GaussianLDS Tests | 66 66 1m29.8s WARNING: Method definition test_Gradient() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:78 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:68. WARNING: Method definition test_Hessian() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:94 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:84. WARNING: Method definition test_smooth() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:117 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:109. WARNING: Method definition test_initial_observation_parameter_updates() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:158 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:161. WARNING: Method definition test_initial_observation_parameter_updates(Int64) in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:158 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:161. WARNING: Method definition test_state_model_parameter_updates() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:195 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:198. WARNING: Method definition test_state_model_parameter_updates(Int64) in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:195 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:198. WARNING: Method definition test_EM() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:285 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:237. WARNING: Method definition test_EM(Int64) in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:285 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:237. Fitting Poisson LDS via LaPlaceEM... 2%|█ | ETA: 0:00:16 ( 0.17 s/it) Fitting Poisson LDS via LaPlaceEM... 7%|███▌ | ETA: 0:00:06 (67.45 ms/it) Fitting Poisson LDS via LaPlaceEM... 13%|██████▌ | ETA: 0:00:04 (44.94 ms/it) Fitting Poisson LDS via LaPlaceEM... 19%|█████████▌ | ETA: 0:00:03 (36.41 ms/it) Fitting Poisson LDS via LaPlaceEM... 25%|████████████▌ | ETA: 0:00:02 (32.06 ms/it) Fitting Poisson LDS via LaPlaceEM... 31%|███████████████▌ | ETA: 0:00:02 (29.30 ms/it) Fitting Poisson LDS via LaPlaceEM... 37%|██████████████████▌ | ETA: 0:00:02 (27.43 ms/it) Fitting Poisson LDS via LaPlaceEM... 43%|█████████████████████▌ | ETA: 0:00:01 (26.05 ms/it) Fitting Poisson LDS via LaPlaceEM... 49%|████████████████████████▌ | ETA: 0:00:01 (24.99 ms/it) Fitting Poisson LDS via LaPlaceEM... 55%|███████████████████████████▌ | ETA: 0:00:01 (24.36 ms/it) Fitting Poisson LDS via LaPlaceEM... 61%|██████████████████████████████▌ | ETA: 0:00:01 (23.66 ms/it) Fitting Poisson LDS via LaPlaceEM... 67%|█████████████████████████████████▌ | ETA: 0:00:01 (23.14 ms/it) Fitting Poisson LDS via LaPlaceEM... 73%|████████████████████████████████████▌ | ETA: 0:00:01 (22.66 ms/it) Fitting Poisson LDS via LaPlaceEM... 79%|███████████████████████████████████████▌ | ETA: 0:00:00 (22.27 ms/it) Fitting Poisson LDS via LaPlaceEM... 85%|██████████████████████████████████████████▌ | ETA: 0:00:00 (21.93 ms/it) Fitting Poisson LDS via LaPlaceEM... 91%|█████████████████████████████████████████████▌ | ETA: 0:00:00 (21.63 ms/it) Fitting Poisson LDS via LaPlaceEM... 97%|████████████████████████████████████████████████▌ | ETA: 0:00:00 (21.38 ms/it) Fitting Poisson LDS via LaPlaceEM... 100%|██████████████████████████████████████████████████| Time: 0:00:02 (21.33 ms/it) Fitting Poisson LDS via LaPlaceEM... 2%|█ | ETA: 0:00:06 (64.34 ms/it) Fitting Poisson LDS via LaPlaceEM... 4%|██ | ETA: 0:00:06 (64.80 ms/it) Fitting Poisson LDS via LaPlaceEM... 6%|███ | ETA: 0:00:06 (66.17 ms/it) Fitting Poisson LDS via LaPlaceEM... 8%|████ | ETA: 0:00:06 (66.96 ms/it) Fitting Poisson LDS via LaPlaceEM... 10%|█████ | ETA: 0:00:06 (67.45 ms/it) Fitting Poisson LDS via LaPlaceEM... 12%|██████ | ETA: 0:00:06 (67.88 ms/it) Fitting Poisson LDS via LaPlaceEM... 14%|███████ | ETA: 0:00:06 (68.12 ms/it) Fitting Poisson LDS via LaPlaceEM... 16%|████████ | ETA: 0:00:06 (67.40 ms/it) Fitting Poisson LDS via LaPlaceEM... 18%|█████████ | ETA: 0:00:06 (67.67 ms/it) Fitting Poisson LDS via LaPlaceEM... 20%|██████████ | ETA: 0:00:05 (67.90 ms/it) Fitting Poisson LDS via LaPlaceEM... 22%|███████████ | ETA: 0:00:05 (68.11 ms/it) Fitting Poisson LDS via LaPlaceEM... 24%|████████████ | ETA: 0:00:05 (68.25 ms/it) Fitting Poisson LDS via LaPlaceEM... 26%|█████████████ | ETA: 0:00:05 (68.39 ms/it) Fitting Poisson LDS via LaPlaceEM... 28%|██████████████ | ETA: 0:00:05 (68.45 ms/it) Fitting Poisson LDS via LaPlaceEM... 30%|███████████████ | ETA: 0:00:05 (68.54 ms/it) Fitting Poisson LDS via LaPlaceEM... 32%|████████████████ | ETA: 0:00:05 (68.61 ms/it) Fitting Poisson LDS via LaPlaceEM... 34%|█████████████████ | ETA: 0:00:05 (68.66 ms/it) Fitting Poisson LDS via LaPlaceEM... 36%|██████████████████ | ETA: 0:00:04 (68.72 ms/it) Fitting Poisson LDS via LaPlaceEM... 38%|███████████████████ | ETA: 0:00:04 (68.78 ms/it) Fitting Poisson LDS via LaPlaceEM... 40%|████████████████████ | ETA: 0:00:04 (68.82 ms/it) Fitting Poisson LDS via LaPlaceEM... 42%|█████████████████████ | ETA: 0:00:04 (68.86 ms/it) Fitting Poisson LDS via LaPlaceEM... 44%|██████████████████████ | ETA: 0:00:04 (68.94 ms/it) Fitting Poisson LDS via LaPlaceEM... 46%|███████████████████████ | ETA: 0:00:04 (68.96 ms/it) Fitting Poisson LDS via LaPlaceEM... 48%|████████████████████████ | ETA: 0:00:04 (69.02 ms/it) Fitting Poisson LDS via LaPlaceEM... 50%|█████████████████████████ | ETA: 0:00:03 (69.01 ms/it) Fitting Poisson LDS via LaPlaceEM... 52%|██████████████████████████ | ETA: 0:00:03 (69.05 ms/it) Fitting Poisson LDS via LaPlaceEM... 54%|███████████████████████████ | ETA: 0:00:03 (69.03 ms/it) Fitting Poisson LDS via LaPlaceEM... 56%|████████████████████████████ | ETA: 0:00:03 (69.07 ms/it) Fitting Poisson LDS via LaPlaceEM... 58%|█████████████████████████████ | ETA: 0:00:03 (69.09 ms/it) Fitting Poisson LDS via LaPlaceEM... 60%|██████████████████████████████ | ETA: 0:00:03 (69.14 ms/it) Fitting Poisson LDS via LaPlaceEM... 62%|███████████████████████████████ | ETA: 0:00:03 (69.15 ms/it) Fitting Poisson LDS via LaPlaceEM... 64%|████████████████████████████████ | ETA: 0:00:02 (69.19 ms/it) Fitting Poisson LDS via LaPlaceEM... 66%|█████████████████████████████████ | ETA: 0:00:02 (69.20 ms/it) Fitting Poisson LDS via LaPlaceEM... 68%|██████████████████████████████████ | ETA: 0:00:02 (69.23 ms/it) Fitting Poisson LDS via LaPlaceEM... 70%|███████████████████████████████████ | ETA: 0:00:02 (69.22 ms/it) Fitting Poisson LDS via LaPlaceEM... 72%|████████████████████████████████████ | ETA: 0:00:02 (69.25 ms/it) Fitting Poisson LDS via LaPlaceEM... 74%|█████████████████████████████████████ | ETA: 0:00:02 (69.26 ms/it) Fitting Poisson LDS via LaPlaceEM... 76%|██████████████████████████████████████ | ETA: 0:00:02 (69.29 ms/it) Fitting Poisson LDS via LaPlaceEM... 78%|███████████████████████████████████████ | ETA: 0:00:02 (69.30 ms/it) Fitting Poisson LDS via LaPlaceEM... 80%|████████████████████████████████████████ | ETA: 0:00:01 (69.32 ms/it) Fitting Poisson LDS via LaPlaceEM... 82%|█████████████████████████████████████████ | ETA: 0:00:01 (69.33 ms/it) Fitting Poisson LDS via LaPlaceEM... 84%|██████████████████████████████████████████ | ETA: 0:00:01 (69.35 ms/it) Fitting Poisson LDS via LaPlaceEM... 86%|███████████████████████████████████████████ | ETA: 0:00:01 (69.19 ms/it) Fitting Poisson LDS via LaPlaceEM... 88%|████████████████████████████████████████████ | ETA: 0:00:01 (69.21 ms/it) Fitting Poisson LDS via LaPlaceEM... 90%|█████████████████████████████████████████████ | ETA: 0:00:01 (69.22 ms/it) Fitting Poisson LDS via LaPlaceEM... 92%|██████████████████████████████████████████████ | ETA: 0:00:01 (69.24 ms/it) Fitting Poisson LDS via LaPlaceEM... 94%|███████████████████████████████████████████████ | ETA: 0:00:00 (69.24 ms/it) Fitting Poisson LDS via LaPlaceEM... 96%|████████████████████████████████████████████████ | ETA: 0:00:00 (69.25 ms/it) Fitting Poisson LDS via LaPlaceEM... 98%|█████████████████████████████████████████████████ | ETA: 0:00:00 (69.26 ms/it) Fitting Poisson LDS via LaPlaceEM... 100%|██████████████████████████████████████████████████| Time: 0:00:06 (69.26 ms/it) Test Summary: | Pass Total Time PoissonLDS Tests | 62 62 1m29.5s Running EM algorithm... 2%|█ | ETA: 0:01:31 ( 0.93 s/it) Running EM algorithm... 3%|█▌ | ETA: 0:01:05 ( 0.67 s/it) Running EM algorithm... 100%|██████████████████████████████████████████████████| Time: 0:00:01 (19.95 ms/it) ┌ Warning: User did not provide as many emmission models as the function expects (K=2). │ Filling in the rest with deep copies of the provided emission model. │ If this is not the desired behavior, specify all the emission models in the 'B=Vector{EmissionModel}' argument │ rather than 'emission' └ @ StateSpaceDynamics ~/.julia/packages/StateSpaceDynamics/zrsML/src/HiddenMarkovModels.jl:75 Test Summary: | Pass Total Time GaussianHMM Tests | 21 21 30.8s Running EM algorithm... 1%|▌ | ETA: 0:00:25 ( 0.13 s/it) Running EM algorithm... 2%|▊ | ETA: 0:00:25 ( 0.13 s/it) Running EM algorithm... 2%|█ | ETA: 0:00:24 ( 0.12 s/it) Running EM algorithm... 2%|█▎ | ETA: 0:00:24 ( 0.12 s/it) Running EM algorithm... 3%|█▌ | ETA: 0:00:24 ( 0.12 s/it) Running EM algorithm... 4%|█▊ | ETA: 0:00:24 ( 0.12 s/it) Running EM algorithm... 4%|██ | ETA: 0:00:24 ( 0.12 s/it) Running EM algorithm... 4%|██▎ | ETA: 0:00:23 ( 0.12 s/it) Running EM algorithm... 100%|██████████████████████████████████████████████████| Time: 0:00:01 ( 5.49 ms/it) Test Summary: | Pass Broken Total Time Switching Gaussian Regression Tests | 10 2 12 14.6s WARNING: Method definition sample_states(Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/HiddenMarkovModels/SwitchingGaussianRegression.jl:164 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/HiddenMarkovModels/SwitchingPoissonRegression.jl:124. Running EM algorithm... 1%|▌ | ETA: 0:01:19 ( 0.40 s/it) Running EM algorithm... 2%|▊ | ETA: 0:01:21 ( 0.41 s/it) Running EM algorithm... 2%|█ | ETA: 0:01:17 ( 0.39 s/it) Running EM algorithm... 2%|█▎ | ETA: 0:01:11 ( 0.36 s/it) Running EM algorithm... 3%|█▌ | ETA: 0:01:06 ( 0.34 s/it) Running EM algorithm... 4%|█▊ | ETA: 0:01:01 ( 0.32 s/it) Running EM algorithm... 4%|██ | ETA: 0:00:58 ( 0.30 s/it) Running EM algorithm... 4%|██▎ | ETA: 0:00:55 ( 0.29 s/it) Running EM algorithm... 5%|██▌ | ETA: 0:00:52 ( 0.28 s/it) Running EM algorithm... 6%|██▊ | ETA: 0:00:51 ( 0.27 s/it) Running EM algorithm... 6%|███ | ETA: 0:00:49 ( 0.26 s/it) Running EM algorithm... 6%|███▎ | ETA: 0:00:47 ( 0.25 s/it) Running EM algorithm... 7%|███▌ | ETA: 0:00:46 ( 0.25 s/it) Running EM algorithm... 8%|███▊ | ETA: 0:00:50 ( 0.27 s/it) Running EM algorithm... 8%|████ | ETA: 0:00:49 ( 0.26 s/it) Running EM algorithm... 8%|████▎ | ETA: 0:00:47 ( 0.26 s/it) Running EM algorithm... 9%|████▌ | ETA: 0:00:47 ( 0.26 s/it) Running EM algorithm... 10%|████▊ | ETA: 0:00:45 ( 0.25 s/it) Running EM algorithm... 10%|█████ | ETA: 0:00:45 ( 0.25 s/it) Running EM algorithm... 10%|█████▎ | ETA: 0:00:43 ( 0.24 s/it) Running EM algorithm... 11%|█████▌ | ETA: 0:00:42 ( 0.24 s/it) Running EM algorithm... 100%|██████████████████████████████████████████████████| Time: 0:00:05 (26.25 ms/it) Test Summary: | Pass Total Time Switching Poisson Regression Tests | 7 7 23.5s Running EM algorithm... 1%|▌ | ETA: 0:00:41 ( 0.21 s/it) Running EM algorithm... 2%|▊ | ETA: 0:00:46 ( 0.23 s/it) Running EM algorithm... 2%|█ | ETA: 0:00:48 ( 0.24 s/it) Running EM algorithm... 2%|█▎ | ETA: 0:00:48 ( 0.24 s/it) Running EM algorithm... 3%|█▌ | ETA: 0:00:47 ( 0.24 s/it) Running EM algorithm... 4%|█▊ | ETA: 0:00:47 ( 0.24 s/it) Running EM algorithm... 4%|██ | ETA: 0:00:46 ( 0.24 s/it) Running EM algorithm... 4%|██▎ | ETA: 0:00:45 ( 0.24 s/it) Running EM algorithm... 5%|██▌ | ETA: 0:00:45 ( 0.24 s/it) Running EM algorithm... 6%|██▊ | ETA: 0:00:45 ( 0.24 s/it) Running EM algorithm... 6%|███ | ETA: 0:00:45 ( 0.24 s/it) Running EM algorithm... 6%|███▎ | ETA: 0:00:45 ( 0.24 s/it) Running EM algorithm... 7%|███▌ | ETA: 0:00:44 ( 0.24 s/it) Running EM algorithm... 8%|███▊ | ETA: 0:00:45 ( 0.24 s/it) Running EM algorithm... 8%|████ | ETA: 0:00:48 ( 0.26 s/it) Running EM algorithm... 8%|████▎ | ETA: 0:00:47 ( 0.26 s/it) Running EM algorithm... 9%|████▌ | ETA: 0:00:46 ( 0.26 s/it) Running EM algorithm... 10%|████▊ | ETA: 0:00:46 ( 0.25 s/it) Running EM algorithm... 10%|█████ | ETA: 0:00:45 ( 0.25 s/it) Running EM algorithm... 10%|█████▎ | ETA: 0:00:44 ( 0.24 s/it) Running EM algorithm... 11%|█████▌ | ETA: 0:00:43 ( 0.24 s/it) Running EM algorithm... 12%|█████▊ | ETA: 0:00:42 ( 0.24 s/it) Running EM algorithm... 12%|██████ | ETA: 0:00:41 ( 0.23 s/it) Running EM algorithm... 12%|██████▎ | ETA: 0:00:40 ( 0.23 s/it) Running EM algorithm... 13%|██████▌ | ETA: 0:00:40 ( 0.23 s/it) Running EM algorithm... 14%|██████▊ | ETA: 0:00:39 ( 0.23 s/it) Running EM algorithm... 14%|███████ | ETA: 0:00:38 ( 0.22 s/it) Running EM algorithm... 14%|███████▎ | ETA: 0:00:38 ( 0.22 s/it) Running EM algorithm... 15%|███████▌ | ETA: 0:00:37 ( 0.22 s/it) Running EM algorithm... 16%|███████▊ | ETA: 0:00:37 ( 0.22 s/it) Running EM algorithm... 16%|████████ | ETA: 0:00:36 ( 0.22 s/it) Running EM algorithm... 16%|████████▎ | ETA: 0:00:36 ( 0.21 s/it) Running EM algorithm... 17%|████████▌ | ETA: 0:00:35 ( 0.21 s/it) Running EM algorithm... 18%|████████▊ | ETA: 0:00:35 ( 0.21 s/it) Running EM algorithm... 18%|█████████ | ETA: 0:00:34 ( 0.21 s/it) Running EM algorithm... 18%|█████████▎ | ETA: 0:00:34 ( 0.21 s/it) Running EM algorithm... 19%|█████████▌ | ETA: 0:00:33 ( 0.21 s/it) Running EM algorithm... 20%|█████████▊ | ETA: 0:00:33 ( 0.21 s/it) Running EM algorithm... 20%|██████████ | ETA: 0:00:33 ( 0.20 s/it) Running EM algorithm... 20%|██████████▎ | ETA: 0:00:32 ( 0.20 s/it) Running EM algorithm... 100%|██████████████████████████████████████████████████| Time: 0:00:08 (41.64 ms/it) Test Summary: | Pass Total Time Switching Bernoulli Regression Tests | 8 8 22.0s Iteration: 1, Log-likelihood: -18.02276257038076 Iteration: 2, Log-likelihood: -18.022762570380753 Convergence reached at iteration 2 Iteration: 1, Log-likelihood: -13.453009429632566 Iteration: 1, Log-likelihood: -7.5245424295889825 Iteration: 1, Log-likelihood: 1.4483718883941044 Iteration: 1, Log-likelihood: 3.575990693075965 Iteration: 1, Log-likelihood: 4.290290570819377 Iteration: 1, Log-likelihood: 5.378657815576921 Iteration: 1, Log-likelihood: 8.810287109392917 Iteration: 1, Log-likelihood: 15.386766315126572 Iteration: 1, Log-likelihood: 15.386766315126568 Iteration: 1, Log-likelihood: 15.386766315126568 Iteration: 1, Log-likelihood: -1398.831265901546 Iteration: 2, Log-likelihood: -1396.6627219322143 Iteration: 3, Log-likelihood: -1395.633766111616 Iteration: 4, Log-likelihood: -1394.975735432063 Iteration: 5, Log-likelihood: -1394.5132296404997 Iteration: 6, Log-likelihood: -1394.1717457692357 Iteration: 7, Log-likelihood: -1393.9110032411222 Iteration: 8, Log-likelihood: -1393.7067162656856 Iteration: 9, Log-likelihood: -1393.5432897777364 Iteration: 10, Log-likelihood: -1393.410260044232 Iteration: 1, Log-likelihood: -1392.7136962202865 Iteration: 1, Log-likelihood: -1392.578192118084 Iteration: 1, Log-likelihood: -1392.5234942282207 Iteration: 1, Log-likelihood: -1392.5007914322812 Iteration: 1, Log-likelihood: -1392.4907980694188 Iteration: 1, Log-likelihood: -1392.4858651187449 Iteration: 1, Log-likelihood: -1392.48295268596 Iteration: 1, Log-likelihood: -1392.4808526751647 Iteration: 1, Log-likelihood: -1392.4790858032102 Iteration: 1, Log-likelihood: -1392.4774625171888 Iteration: 1, Log-likelihood: -888.3063755769025 Iteration: 2, Log-likelihood: -887.4273881872208 Iteration: 3, Log-likelihood: -887.3051464543107 Iteration: 4, Log-likelihood: -887.2301969881337 Iteration: 5, Log-likelihood: -887.1752482950844 Iteration: 6, Log-likelihood: -887.1329751884638 Iteration: 7, Log-likelihood: -887.0994657823518 Iteration: 8, Log-likelihood: -887.0723520593154 Iteration: 9, Log-likelihood: -887.050084103031 Iteration: 10, Log-likelihood: -887.0315844557973 Iteration: 1, Log-likelihood: -893.133160003927 Iteration: 1, Log-likelihood: -891.454955383711 Iteration: 1, Log-likelihood: -890.660047295849 Iteration: 1, Log-likelihood: -890.0696283837219 Iteration: 1, Log-likelihood: -889.5974456751278 Iteration: 1, Log-likelihood: -889.2107181808991 Iteration: 1, Log-likelihood: -888.8899886742729 Iteration: 1, Log-likelihood: -888.6216497219812 Iteration: 1, Log-likelihood: -888.3955761107898 Iteration: 1, Log-likelihood: -888.2040075738984 Test Summary: | Pass Total Time MixtureModels.jl Tests | 129 129 3.6s Test Summary: | Pass Total Time GaussianRegression Tests | 27 27 6.7s Test Summary: | Pass Total Time BernoulliRegression Tests | 24 24 8.6s Test Summary: | Pass Broken Total Time PoissonRegression Tests | 22 2 24 14.8s Test Summary: | Pass Total Time AutoRegression Tests | 4 4 0.1s [-4.074293245263509 -3.821356045113924 -1.2686517588002078 1.022960036612551 -0.7864992752352095 1.4648384917411357 -3.0928944772558045 2.319623677043076 0.9603486275294284 -0.8830503676795718 -1.8040272888326263 -2.842298213198074 -1.0875471063524853 -1.3787662419930047 -4.990251018779086 -2.0501112761045146 -4.918756849027527 -3.2625773966652343 -0.3551031337886682 -5.2256461436722015 -2.404080926660146 -0.017545125819082852 0.2796757594823546 -2.760309810663633 -0.4686465500643626 1.0599215063509595 -0.4208328744192671 -4.915847942499333 5.722938102147361 -4.02143999000544 0.6914519654402119 0.4610375463517339 -2.666401788606376 2.2413327767497058 0.8692666695689996 -3.4870574121357407 -1.2477866829147886 -2.0338079729743868 -2.611018627513215 -2.152929018109229 0.6553606001624335 0.5899991676584339 1.6414901274842553 -4.147936128386001 0.47038964262677707 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-2.3272620920808 -0.6350294776625629 1.5712416247557863 -2.357068319950269 -1.2454428034115297 -0.6673496469145455 -0.18426765504559506 -1.283013728651319 -1.432094904747711 -6.184948008199819 -2.2176425381078606 -2.795052206988418 -2.409023653501206 -4.524289202555603 -2.8119645813794683 2.6054747492534363 1.5248883109211522 6.546883237733981 0.3460655189629205 -2.1019268579564727 -1.1329192599705804 -2.138199422107518 0.17019184840504076 2.6603988127550413 1.8760225277446367 -0.3675694069181745 -4.030810093431694 0.2604256206535929 2.2980416526614706 -0.8154130958395465 -0.07335091134069924 2.7268558163639316 -2.6537269808334525 5.03036910398321]Test Summary: | Pass Total Time AutoRegressive HMM Tests | 10 10 4.2s Test Summary: | Pass Total Time Utilities.jl Tests | 76 76 4.2s Fitting Probabilistic PCA... 2%|▌ | ETA: 0:00:16 Fitting Probabilistic PCA... 100%|███████████████████████| Time: 0:00:00 Test Summary: | Pass Total Time PPCA Tests | 23 23 6.0s Running EM algorithm... 2%|█ | ETA: 0:00:34 ( 0.34 s/it) Running EM algorithm... 3%|█▌ | ETA: 0:00:31 ( 0.32 s/it) Running EM algorithm... 4%|██ | ETA: 0:00:29 ( 0.31 s/it) Running EM algorithm... 5%|██▌ | ETA: 0:00:28 ( 0.30 s/it) Running EM algorithm... 6%|███ | ETA: 0:00:28 ( 0.29 s/it) Running EM algorithm... 7%|███▌ | ETA: 0:00:27 ( 0.29 s/it) Running EM algorithm... 8%|████ | ETA: 0:00:26 ( 0.29 s/it) Running EM algorithm... 9%|████▌ | ETA: 0:00:31 ( 0.34 s/it) Running EM algorithm... 10%|█████ | ETA: 0:00:30 ( 0.33 s/it) Running EM algorithm... 11%|█████▌ | ETA: 0:00:29 ( 0.33 s/it) Running EM algorithm... 12%|██████ | ETA: 0:00:28 ( 0.32 s/it) Running EM algorithm... 13%|██████▌ | ETA: 0:00:28 ( 0.32 s/it) Running EM algorithm... 14%|███████ | ETA: 0:00:27 ( 0.31 s/it) Running EM algorithm... 15%|███████▌ | ETA: 0:00:26 ( 0.31 s/it) Running EM algorithm... 16%|████████ | ETA: 0:00:26 ( 0.31 s/it) Running EM algorithm... 100%|██████████████████████████████████████████████████| Time: 0:00:04 (49.32 ms/it) Running EM algorithm... 2%|█ | ETA: 0:00:12 ( 0.13 s/it) Running EM algorithm... 5%|██▌ | ETA: 0:00:07 (73.63 ms/it) Running EM algorithm... 9%|████▌ | ETA: 0:00:05 (54.00 ms/it) Running EM algorithm... 14%|███████ | ETA: 0:00:04 (43.59 ms/it) Running EM algorithm... 100%|██████████████████████████████████████████████████| Time: 0:00:00 ( 6.69 ms/it) Test Summary: | Pass Total Time Viterbi and Class Probability Tests | 37 37 11.1s Testing StateSpaceDynamics tests passed Testing completed after 464.93s PkgEval succeeded after 990.72s