Package evaluation to test Zarr on Julia 1.12.6 (15346901f00) started at 2026-06-29T11:52:10.303 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 6.19s ################################################################################ # Installation # Installing Zarr... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [0a941bbe] + Zarr v0.10.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [dce04be8] + ArgCheck v2.5.0 [d1d4a3ce] + BitFlags v0.1.10 [a74b3585] + Blosc v0.7.3 [0b6fb165] + ChunkCodecCore v1.0.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [6309b1aa] + CodecInflate64 v0.1.3 [944b1d66] + CodecZlib v0.7.8 [f0e56b4a] + ConcurrentUtilities v2.5.1 [187b0558] + ConstructionBase v1.6.0 [864edb3b] + DataStructures v0.19.6 [b342263e] + DateTimes64 v1.0.1 [3c3547ce] + DiskArrays v0.4.21 [460bff9d] + ExceptionUnwrapping v0.1.11 ⌅ [cd3eb016] + HTTP v1.11.0 [0c81fc1b] + InputBuffers v1.1.1 [692b3bcd] + JLLWrappers v1.8.0 [682c06a0] + JSON v1.6.1 [8ac3fa9e] + LRUCache v1.6.2 [e6f89c97] + LoggingExtras v1.2.0 [739be429] + MbedTLS v1.1.10 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.6.1 [bac558e1] + OrderedCollections v2.0.1 [69de0a69] + Parsers v2.8.6 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [777ac1f9] + SimpleBufferStream v1.2.0 [ec057cc2] + StructUtils v2.8.2 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [0a941bbe] + Zarr v0.10.0 [49080126] + ZipArchives v2.6.0 [0b7ba130] + Blosc_jll v1.21.7+0 [5ced341a] + Lz4_jll v1.10.1+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [3161d3a3] + Zstd_jll v1.5.7+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [8bf52ea8] + CRC32c v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [458c3c95] + OpenSSL_jll v3.5.4+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.09s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.12/activate_set.jl:78 ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ Did not find rev manifest-check in repository │ Stacktrace: │ [1] pkgerror(msg::String) │ @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 │ [2] (::Pkg.Types.var"#handle_repo_add!##2#handle_repo_add!##3"{Pkg.Types.Context, PackageSpec, String})(repo::LibGit2.GitRepo) │ @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:1009 │ [3] with(f::Pkg.Types.var"#handle_repo_add!##2#handle_repo_add!##3"{Pkg.Types.Context, PackageSpec, String}, obj::LibGit2.GitRepo) │ @ LibGit2 /opt/julia/share/julia/stdlib/v1.12/LibGit2/src/types.jl:1208 │ [4] handle_repo_add!(ctx::Pkg.Types.Context, pkg::PackageSpec) │ @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:988 │ [5] collect_fixed!(env::Pkg.Types.EnvCache, pkgs::Vector{PackageSpec}, names::Dict{UUID, String}, julia_version::VersionNumber) │ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:444 │ [6] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{PackageSpec}, julia_version::VersionNumber, installed_only::Bool) │ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:528 │ [7] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, level::UpgradeLevel; skip_writing_project::Bool, preserve::Nothing) │ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2000 │ [8] up │ @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1977 [inlined] │ [9] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; level::UpgradeLevel, mode::PackageMode, preserve::Nothing, update_registry::Bool, skip_writing_project::Bool, workspace::Bool, kwargs::@Kwargs{io::Base.DevNull}) │ @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:450 │ [10] up │ @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:419 [inlined] │ [11] up │ @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:174 [inlined] │ [12] #resolve#171 │ @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:456 [inlined] │ [13] resolve │ @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:455 [inlined] │ [14] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.12/activate_set.jl:83 │ [15] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.12/activate_set.jl:9 │ [16] (::var"#10#11")() │ @ Main /PkgEval.jl/scripts/precompile.jl:21 │ [17] capture_pkg_output(f::var"#10#11"; suppress::Bool) │ @ Main /PkgEval.jl/scripts/common.jl:55 │ [18] suppress_pkg_output(f::Function) │ @ Main /PkgEval.jl/scripts/common.jl:35 │ [19] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:19 │ [20] include(mod::Module, _path::String) │ @ Base ./Base.jl:306 │ [21] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:317 │ [22] _start() │ @ Base ./client.jl:550 └ @ Main /PkgEval.jl/scripts/precompile.jl:24 Activating project at `~/.julia/environments/v1.12` Precompiling package dependencies... Precompiling packages... 1193.4 ms ✓ URIs 767.3 ms ✓ SimpleBufferStream 877.6 ms ✓ ArgCheck 844.1 ms ✓ BitFlags 1557.7 ms ✓ ConcurrentUtilities 857.9 ms ✓ InputBuffers 846.2 ms ✓ DateTimes64 1044.8 ms ✓ LoggingExtras 1442.9 ms ✓ CodecInflate64 1198.6 ms ✓ ExceptionUnwrapping 3929.1 ms ✓ Blosc_jll 4012.0 ms ✓ OpenSSL 8617.5 ms ✓ ZipArchives 1027.2 ms ✓ Blosc 25882.9 ms ✓ HTTP 43705.2 ms ✓ Zarr 16 dependencies successfully precompiled in 98 seconds. 53 already precompiled. Precompilation completed after 107.98s ################################################################################ # Testing # Testing Zarr Updating git-repo `https://github.com/JamesWrigley/CondaPkg.jl` Updating git-repo `https://github.com/JamesWrigley/CondaPkg.jl` Testing failed after 3.93s ERROR: LoadError: Did not find rev manifest-check in repository Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] (::Pkg.Types.var"#handle_repo_add!##2#handle_repo_add!##3"{Pkg.Types.Context, PackageSpec, String})(repo::LibGit2.GitRepo) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:1009 [3] with(f::Pkg.Types.var"#handle_repo_add!##2#handle_repo_add!##3"{Pkg.Types.Context, PackageSpec, String}, obj::LibGit2.GitRepo) @ LibGit2 /opt/julia/share/julia/stdlib/v1.12/LibGit2/src/types.jl:1208 [4] handle_repo_add!(ctx::Pkg.Types.Context, pkg::PackageSpec) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:988 [5] collect_fixed!(env::Pkg.Types.EnvCache, pkgs::Vector{PackageSpec}, names::Dict{UUID, String}, julia_version::VersionNumber) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:444 [6] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{PackageSpec}, julia_version::VersionNumber, installed_only::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:528 [7] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, level::UpgradeLevel; skip_writing_project::Bool, preserve::Nothing) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2000 [8] up @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1977 [inlined] [9] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; level::UpgradeLevel, mode::PackageMode, preserve::Nothing, update_registry::Bool, skip_writing_project::Bool, workspace::Bool, kwargs::@Kwargs{io::Base.DevNull}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:450 [10] up @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:419 [inlined] [11] up @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:174 [inlined] [12] #resolve#171 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:456 [inlined] [13] resolve @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:455 [inlined] [14] (::Pkg.Operations.var"#190#191"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#205#206"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec})() @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2294 [15] with_temp_env(fn::Pkg.Operations.var"#190#191"{String, Pkg.Types.EnvCache, Bool, Bool, Bool, Pkg.Operations.var"#205#206"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec}, temp_env::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2164 [16] (::Pkg.Operations.var"#186#187"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#205#206"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, String})(tmp::String) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2278 [17] mktempdir(fn::Pkg.Operations.var"#186#187"{Dict{String, Any}, Bool, Bool, Bool, Pkg.Operations.var"#205#206"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, PackageSpec}, Pkg.Types.Context, PackageSpec, String, String}, parent::String; prefix::String) @ Base.Filesystem ./file.jl:936 [18] mktempdir(fn::Function, parent::String) @ Base.Filesystem ./file.jl:932 [19] #sandbox#182 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2225 [inlined] [20] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2481 [21] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [22] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [23] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [24] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [25] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [26] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [27] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [28] include(mod::Module, _path::String) @ Base ./Base.jl:306 [29] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [30] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 135.53s: there were unidentified errors