Package evaluation to test Ripserer on Julia 1.12.6 (15346901f00) started at 2026-06-29T12:00:19.602 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 6.39s ################################################################################ # Installation # Installing Ripserer... Resolving package versions... Installed Ripserer ─ v0.17.0 Updating `~/.julia/environments/v1.12/Project.toml` [aa79e827] + Ripserer v0.17.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [7d9f7c33] + Accessors v0.1.45 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [324d7699] + CategoricalArrays v1.1.1 [3da002f7] + ColorTypes v0.12.1 [38540f10] + CommonSolve v0.2.9 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.6 [e2d170a0] + DataValueInterfaces v1.0.0 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.129 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [86223c79] + Graphs v1.14.0 [e91730f6] + Hungarian v0.7.0 [34004b35] + HypergeometricFunctions v0.3.28 [d25df0c9] + Inflate v0.1.5 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v1.0.1 [e80e1ace] + MLJModelInterface v1.12.1 [1914dd2f] + MacroTools v0.5.16 [978d7f02] + MiniQhull v0.4.0 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v2.0.1 [90014a1f] + PDMats v0.11.40 [90b4794c] + PersistenceDiagrams v0.9.10 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [aa79e827] + Ripserer v0.17.0 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v3.0.0 [321657f4] + ScientificTypes v3.3.0 [30f210dd] + ScientificTypesBase v3.1.0 [699a6c99] + SimpleTraits v0.9.6 [a2af1166] + SortingAlgorithms v1.2.3 [276daf66] + SpecialFunctions v2.8.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [4c63d2b9] + StatsFuns v2.2.0 [892a3eda] + StringManipulation v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.13.0 [9d95972d] + TupleTools v1.6.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [460c41e3] + QhullMiniWrapper_jll v1.0.0+1 ⌅ [784f63db] + Qhull_jll v8.0.1004+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 7.8s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 1563.2 ms ✓ Parameters 970.8 ms ✓ ComputationalResources 1002.1 ms ✓ ScientificTypesBase 1334.5 ms ✓ LearnAPI 1093.5 ms ✓ Roots → RootsChainRulesCoreExt 2832.6 ms ✓ MLCore 1327.9 ms ✓ Qhull_jll 1114.3 ms ✓ Measurements → MeasurementsRecipesBaseExt 1125.9 ms ✓ CategoricalArrays → CategoricalArraysJSONExt 10587.9 ms ✓ CategoricalArrays → CategoricalArraysStatsBaseExt 3090.8 ms ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt 920.4 ms ✓ Measurements → MeasurementsSpecialFunctionsExt 15721.2 ms ✓ NNlib 3217.2 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 5466.1 ms ✓ Distributions → DistributionsChainRulesCoreExt 1030.5 ms ✓ StatisticalTraits 1173.9 ms ✓ QhullMiniWrapper_jll 2015.7 ms ✓ NNlib → NNlibSpecialFunctionsExt 45099.7 ms ✓ MLUtils 1836.0 ms ✓ MLJModelInterface 103634.2 ms ✓ ScientificTypes 855.1 ms ✓ MiniQhull 16050.7 ms ✓ StatisticalMeasuresBase 9617.8 ms ✓ CategoricalDistributions 97792.4 ms ✓ PersistenceDiagrams 118311.6 ms ✓ MLJBase 78874.9 ms ✓ Ripserer 27 dependencies successfully precompiled in 529 seconds. 166 already precompiled. Precompilation completed after 541.39s ################################################################################ # Testing # Testing Ripserer Status `/tmp/jl_5bZY8K/Project.toml` [4c88cf16] Aqua v0.8.16 [34da2185] Compat v4.18.1 [864edb3b] DataStructures v0.19.6 [b4f34e82] Distances v0.10.12 [e30172f5] Documenter v1.17.0 [86223c79] Graphs v1.14.0 [c8e1da08] IterTools v1.10.0 [a7f614a8] MLJBase v1.14.0 [e80e1ace] MLJModelInterface v1.12.1 [978d7f02] MiniQhull v0.4.0 [90b4794c] PersistenceDiagrams v0.9.10 [92933f4c] ProgressMeter v1.11.0 [3cdcf5f2] RecipesBase v1.3.4 [aa79e827] Ripserer v0.17.0 [1bc83da4] SafeTestsets v0.1.0 [90137ffa] StaticArrays v1.9.18 [fd094767] Suppressor v0.2.8 [9d95972d] TupleTools v1.6.0 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_5bZY8K/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.45 [79e6a3ab] Adapt v4.7.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.16 [ec485272] ArnoldiMethod v0.4.0 [a9b6321e] Atomix v1.1.3 [49dc2e85] Calculus v0.5.2 [324d7699] CategoricalArrays v1.1.1 [af321ab8] CategoricalDistributions v0.2.2 [d360d2e6] ChainRulesCore v1.26.1 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [38540f10] CommonSolve v0.2.9 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.6 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.129 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.17.0 [1a297f60] FillArrays v1.16.0 ⌅ [53c48c17] FixedPointNumbers v0.8.6 [46192b85] GPUArraysCore v0.2.0 [d7ba0133] Git v1.5.0 [86223c79] Graphs v1.14.0 [076d061b] HashArrayMappedTries v0.2.0 [e91730f6] Hungarian v0.7.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v1.0.0 [d25df0c9] Inflate v0.1.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [63c18a36] KernelAbstractions v0.9.41 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [92ad9a40] LearnAPI v2.0.1 [2ab3a3ac] LogExpFunctions v1.0.1 [c2834f40] MLCore v1.0.2 [a7f614a8] MLJBase v1.14.0 [e80e1ace] MLJModelInterface v1.12.1 [f1d291b0] MLUtils v0.4.9 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.3 [eff96d63] Measurements v2.14.1 [978d7f02] MiniQhull v0.4.0 [e1d29d7a] Missings v1.2.0 [872c559c] NNlib v0.9.37 [bac558e1] OrderedCollections v2.0.1 [90014a1f] PDMats v0.11.40 [d96e819e] Parameters v0.13.1 [69de0a69] Parsers v2.8.6 [90b4794c] PersistenceDiagrams v0.9.10 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [aa79e827] Ripserer v0.17.0 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v3.0.0 [1bc83da4] SafeTestsets v0.1.0 [321657f4] ScientificTypes v3.3.0 [30f210dd] ScientificTypesBase v3.1.0 [7e506255] ScopedValues v1.6.2 [605ecd9f] ShowCases v0.1.0 [699a6c99] SimpleTraits v0.9.6 [a2af1166] SortingAlgorithms v1.2.3 [276daf66] SpecialFunctions v2.8.0 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [c062fc1d] StatisticalMeasuresBase v0.1.4 [64bff920] StatisticalTraits v3.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [4c63d2b9] StatsFuns v2.2.0 [892a3eda] StringManipulation v0.4.4 [ec057cc2] StructUtils v2.8.2 [fd094767] Suppressor v0.2.8 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.13.0 [3bb67fe8] TranscodingStreams v0.11.3 [9d95972d] TupleTools v1.6.0 [3a884ed6] UnPack v1.0.2 [013be700] UnsafeAtomics v0.3.1 [2e619515] Expat_jll v2.8.1+0 [020c3dae] Git_LFS_jll v3.7.1+0 [f8c6e375] Git_jll v2.54.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [9bd350c2] OpenSSH_jll v10.3.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [460c41e3] QhullMiniWrapper_jll v1.0.0+1 ⌅ [784f63db] Qhull_jll v8.0.1004+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 3332.3 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 4 seconds. 63 already precompiled. Test Summary: | Pass Total Time primefield | 106 106 16.5s Test Summary: | Pass Total Time simplex | 1096 1096 27.1s Test Summary: | Pass Total Time chainelement | 498 498 8.8s Test Summary: | Pass Total Time chain | 132 132 18.5s Test Summary: | Pass Total Time plotting | 24 24 7.2s Test Summary: | Pass Total Time reducedmatrix | 120 120 5.9s Test Summary: | Total Time zerodimensional | 0 0.0s Test Summary: | Pass Broken Total Time rips | 237 2 239 2m22.6s Test Summary: | Pass Total Time cubical | 607 607 1m36.4s Test Summary: | Pass Total Time custom | 58 58 30.9s Test Summary: | Pass Total Time alpha | 150 150 22.3s Test Summary: | Pass Total Time edgecollapse | 129 129 48.1s Test Summary: | Pass Total Time new filtrations | 227 227 29.9s Test Summary: | Pass Total Time cycles | 128 128 14.1s Test Summary: | Pass Total Time circularcoordinates | 108 108 33.6s Precompiling packages... 3897.5 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1198.4 ms ✓ Adapt → AdaptStaticArraysExt 5753.3 ms ✓ Distributions → DistributionsChainRulesCoreExt 10010.6 ms ✓ CategoricalDistributions 9046.1 ms ✓ KernelAbstractions 2322.1 ms ✓ KernelAbstractions → SparseArraysExt 1726.8 ms ✓ KernelAbstractions → LinearAlgebraExt 24298.2 ms ✓ NNlib 1989.4 ms ✓ NNlib → NNlibSpecialFunctionsExt 11131.7 ms ✓ MLUtils 16019.1 ms ✓ StatisticalMeasuresBase 24069.6 ms ✓ MLJBase 12 dependencies successfully precompiled in 112 seconds. 121 already precompiled. Precompiling packages... 3612.6 ms ✓ Distances → DistancesChainRulesCoreExt 1 dependency successfully precompiled in 4 seconds. 11 already precompiled. Test Summary: | Pass Total Time mlj | 25 25 2m42.9s Test Summary: | Pass Total Time aqua | 10 10 1m04.2s Precompiling packages... 43574.9 ms ✓ Documenter 1 dependency successfully precompiled in 44 seconds. 53 already precompiled. Precompiling packages... 975.4 ms ✓ StructUtils → StructUtilsTablesExt 1 dependency successfully precompiled in 1 seconds. 11 already precompiled. Precompiling packages... 1123.4 ms ✓ CategoricalArrays → CategoricalArraysJSONExt 1 dependency successfully precompiled in 1 seconds. 19 already precompiled. ┌ Warning: Doctests only run on Linux and Julia 1.7 └ @ Main.var"##doctests#305" ~/.julia/packages/Ripserer/SoXCe/test/doctests.jl:6 Test Summary: | Total Time doctests | 0 49.9s Testing Ripserer tests passed Testing completed after 788.55s PkgEval succeeded after 1355.68s