Package evaluation to test GaussianMarkovRandomFields on Julia 1.12.6 (15346901f00) started at 2026-06-29T12:02:57.118 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 6.34s ################################################################################ # Installation # Installing GaussianMarkovRandomFields... Resolving package versions... Installed SciMLBase ─ v3.30.0 Installed Krylov ──── v0.10.8 Updating `~/.julia/environments/v1.12/Project.toml` [d5f06795] + GaussianMarkovRandomFields v0.12.3 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.22.1 [14f7f29c] + AMD v0.5.3 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.45 [79e6a3ab] + Adapt v4.7.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.27.0 [d360d2e6] + ChainRulesCore v1.26.1 [60701a23] + CliqueTrees v1.19.3 [08986516] + Collects v1.1.0 [38540f10] + CommonSolve v0.2.9 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.5 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.6 [a0c0ee7d] + DifferentiationInterface v0.7.18 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.129 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.7 [e2ba6199] + ExprTools v0.1.10 [1a297f60] + FillArrays v1.16.0 [3821ddf9] + FixedSizeArrays v1.3.0 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v1.9.3 [46192b85] + GPUArraysCore v0.2.0 [d5f06795] + GaussianMarkovRandomFields v0.12.3 [86223c79] + Graphs v1.14.0 [34004b35] + HypergeometricFunctions v0.3.28 [d25df0c9] + Inflate v0.1.5 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [ba0b0d4f] + Krylov v0.10.8 [7a12625a] + LinearMaps v3.11.4 [7ed4a6bd] + LinearSolve v3.87.0 [2ab3a3ac] + LogExpFunctions v1.0.1 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [46d2c3a1] + MuladdMacro v0.2.6 [b8a86587] + NearestNeighbors v0.4.27 [bac558e1] + OrderedCollections v2.0.1 [90014a1f] + PDMats v0.11.40 [d236fae5] + PreallocationTools v1.2.1 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [43287f4e] + PtrArrays v1.4.0 [0c0d3e7f] + PureKLU v1.0.2 [1fd47b50] + QuadGK v2.11.3 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v4.3.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v3.0.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.21 [0bca4576] + SciMLBase v3.30.0 [a6db7da4] + SciMLLogging v2.0.1 [c0aeaf25] + SciMLOperators v1.22.1 [431bcebd] + SciMLPublic v1.2.1 [53ae85a6] + SciMLStructures v1.10.1 [043bf095] + SelectedInversion v0.2.1 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.6 [a2af1166] + SortingAlgorithms v1.2.3 [a57abbd0] + SparseColumnPivotedQR v2.1.2 [276daf66] + SpecialFunctions v2.8.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [4c63d2b9] + StatsFuns v2.2.0 [2efcf032] + SymbolicIndexingInterface v0.3.49 [781d530d] + TruncatedStacktraces v1.4.0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [1317d2d5] + oneTBB_jll v2022.3.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Installation completed after 7.32s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.12/activate_set.jl:78 Precompiling package dependencies... Precompiling packages... 1731.8 ms ✓ ConcreteStructs 2824.6 ms ✓ LinearMaps 721.2 ms ✓ MistyClosures 877.8 ms ✓ VTKBase 3671.8 ms ✓ Collects 1343.4 ms ✓ LogExpFunctions 2382.4 ms ✓ EnzymeCore → AdaptExt 825.2 ms ✓ ADTypes → ADTypesEnzymeCoreExt 14394.2 ms ✓ Krylov 770.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 11231.1 ms ✓ SparseConnectivityTracer 855.7 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 1351.9 ms ✓ SciMLLogging 1100.2 ms ✓ Accessors → StructArraysExt 6472.0 ms ✓ SciMLOperators 5476.8 ms ✓ SymbolicIndexingInterface 1209.5 ms ✓ TruncatedStacktraces 5660.8 ms ✓ DispatchDoctor 1108.5 ms ✓ Roots → RootsChainRulesCoreExt 1061.0 ms ✓ InlineTest 1272.0 ms ✓ LinearElasticity_jll 1249.6 ms ✓ SCOTCH_jll 1531.6 ms ✓ MuladdMacro 15685.4 ms ✓ SparseColumnPivotedQR 8205.5 ms ✓ SelectedInversion 11350.9 ms ✓ SparseMatrixColorings 4090.1 ms ✓ SciMLStructures 2121.1 ms ✓ PreallocationTools 821.9 ms ✓ ADTypes → ADTypesChainRulesCoreExt 1163.3 ms ✓ EnzymeCore → EnzymeCoreChainRulesCoreExt 839.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 1231.7 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 1251.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1208.5 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1804.6 ms ✓ ArrayInterface → ArrayInterfaceChainRulesExt 8204.1 ms ✓ Xorg_libXfixes_jll 987.2 ms ✓ LightXML 8740.5 ms ✓ LibGEOS → LibGEOSRecipesBaseExt 9203.2 ms ✓ NearestNeighbors 5745.2 ms ✓ Xorg_libXft_jll 1312.9 ms ✓ Xorg_libXinerama_jll 1369.4 ms ✓ GLU_jll 201024.7 ms ✓ Enzyme → EnzymeStaticArraysExt 20350.9 ms ✓ Enzyme → EnzymeChainRulesCoreExt 19340.5 ms ✓ Enzyme → EnzymeGPUArraysCoreExt 19076.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceEnzymeExt 19992.0 ms ✓ QuadGK → QuadGKEnzymeExt 754.1 ms ✓ LinearMaps → LinearMapsStatisticsExt 1781.6 ms ✓ LinearMaps → LinearMapsSparseArraysExt 813.1 ms ✓ LinearMaps → LinearMapsChainRulesCoreExt 3486.5 ms ✓ FixedSizeArrays 814.7 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 5116.1 ms ✓ SpecialFunctions 3181.0 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 7033.3 ms ✓ StatsBase 19588.2 ms ✓ Enzyme → EnzymeLogExpFunctionsExt 2632.6 ms ✓ SparseConnectivityTracer → SparseConnectivityTracerNaNMathExt 1419.5 ms ✓ SparseConnectivityTracer → SparseConnectivityTracerChainRulesCoreExt 2390.6 ms ✓ SparseConnectivityTracer → SparseConnectivityTracerLogExpFunctionsExt 1418.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseConnectivityTracerExt 6354.3 ms ✓ SciMLLogging → SciMLLoggingTracyExt 1032.9 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1479.7 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 10079.9 ms ✓ RecursiveArrayTools 4725.5 ms ✓ FunctionWrappersWrappers 861.2 ms ✓ DispatchDoctor → DispatchDoctorEnzymeCoreExt 1295.7 ms ✓ DispatchDoctor → DispatchDoctorChainRulesCoreExt 18585.1 ms ✓ ReTest 4024.6 ms ✓ MMG_jll 48749.7 ms ✓ PureKLU 1297.9 ms ✓ SparseColumnPivotedQR → SparseColumnPivotedQRAMDExt 1914.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseMatrixColoringsExt 1499.5 ms ✓ PreallocationTools → PreallocationToolsSparseConnectivityTracerExt 4196.0 ms ✓ WriteVTK 21935.0 ms ✓ OCCT_jll 1387.0 ms ✓ FLTK_jll 763.3 ms ✓ FixedSizeArrays → FixedSizeArraysAdaptExt 753.3 ms ✓ FixedSizeArrays → FixedSizeArraysRandomExt 3689.1 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2370.6 ms ✓ HypergeometricFunctions 198402.3 ms ✓ Enzyme → EnzymeSpecialFunctionsExt 3052.3 ms ✓ SparseConnectivityTracer → SparseConnectivityTracerSpecialFunctionsExt 8813.4 ms ✓ ForwardDiff 1659.7 ms ✓ PDMats → StatsBaseExt 1120.3 ms ✓ RecursiveArrayTools → RecursiveArrayToolsStatisticsExt 1312.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsStructArraysExt 1604.4 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 1210.7 ms ✓ RecursiveArrayTools → RecursiveArrayToolsTablesExt 199659.9 ms ✓ FunctionWrappersWrappers → FunctionWrappersWrappersEnzymeExt 230640.0 ms ✓ Mooncake 13503.1 ms ✓ gmsh_jll 14391.1 ms ✓ CliqueTrees 13163.4 ms ✓ StatsFuns 1731.6 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 3964.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1293.7 ms ✓ Roots → RootsForwardDiffExt 17012.9 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 88989.9 ms ✓ Zygote 17239.4 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 62734.1 ms ✓ SciMLBase 221731.7 ms ✓ Mooncake → MooncakeChainRulesExt 17466.5 ms ✓ MooncakeSparse 5546.4 ms ✓ Mooncake → MooncakeFunctionWrappersExt 216399.7 ms ✓ Mooncake → MooncakeJETExt 7620.7 ms ✓ Mooncake → MooncakeLogExpFunctionsExt 8986.3 ms ✓ Mooncake → MooncakeSpecialFunctionsExt 5471.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceMooncakeExt 235294.9 ms ✓ RecursiveArrayTools → RecursiveArrayToolsMooncakeExt 3830.7 ms ✓ FunctionWrappersWrappers → FunctionWrappersWrappersMooncakeExt 3354.6 ms ✓ Gmsh 17178.9 ms ✓ CliqueTrees → MooncakeExt 3231.7 ms ✓ CliqueTrees → KrylovExt 3216.1 ms ✓ CliqueTrees → AMDExt 16482.0 ms ✓ SparseMatrixColorings → SparseMatrixColoringsCliqueTreesExt 1824.2 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 3154.9 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 36519.7 ms ✓ StatsModels 51789.1 ms ✓ Tensors 82196.6 ms ✓ Zygote → ZygoteDistancesExt 4450.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceZygoteExt 6500.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsZygoteExt 2838.3 ms ✓ SciMLBase → SciMLBaseStaticArraysExt 192645.6 ms ✓ SciMLBase → SciMLBaseMooncakeExt 2831.0 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 2400.9 ms ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt 5551.4 ms ✓ SciMLBase → SciMLBaseForwardDiffExt ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 11 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /cache/build/builder-amdci5-4/julialang/julia-release-1-dot-12/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#398 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 #634 at ./asyncevent.jl:359 jfptr_YY.634_15147.1 at /opt/julia/lib/julia/sys.so (unknown line) jl_apply at /cache/build/builder-amdci5-4/julialang/julia-release-1-dot-12/src/julia.h:2391 [inlined] start_task at /cache/build/builder-amdci5-4/julialang/julia-release-1-dot-12/src/task.c:1252 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007b26274601f0 Total snapshots: 363. Utilization: 0% ╎363 @Base/asyncevent.jl:359 (::Base.var"#634#635"{FileWatching.Pidfile.var… ╎ 363 @Base/asyncevent.jl:185 _trywait(t::Timer) ╎ 363 @Base/condition.jl:136 wait ╎ 363 @Base/condition.jl:141 wait(c::Base.GenericCondition{Base.Threads.S… ╎ 363 @Base/task.jl:1228 wait() 362╎ 363 @Base/task.jl:1216 poptask(W::Base.IntrusiveLinkedListSynchronize… ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /cache/build/builder-amdci5-4/julialang/julia-release-1-dot-12/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 task_done_hook at ./task.jl:868 jfptr_task_done_hook_59905.1 at /opt/julia/lib/julia/sys.so (unknown line) jl_apply at /cache/build/builder-amdci5-4/julialang/julia-release-1-dot-12/src/julia.h:2391 [inlined] jl_finish_task at /cache/build/builder-amdci5-4/julialang/julia-release-1-dot-12/src/task.c:341 start_task at /cache/build/builder-amdci5-4/julialang/julia-release-1-dot-12/src/task.c:1263 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000784d64473d00 Total snapshots: 408. Utilization: 0% ╎408 @Base/task.jl:868 task_done_hook(t::Task) ╎ 408 @Base/task.jl:1228 wait() 407╎ 408 @Base/task.jl:1216 poptask(W::Base.IntrusiveLinkedListSynchronized{T… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:156 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /cache/build/builder-amdci5-4/julialang/julia-release-1-dot-12/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#398 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:332 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_16003.1 at /opt/julia/lib/julia/sys.so (unknown line) jl_apply at /cache/build/builder-amdci5-4/julialang/julia-release-1-dot-12/src/julia.h:2391 [inlined] start_task at /cache/build/builder-amdci5-4/julialang/julia-release-1-dot-12/src/task.c:1252 unknown function (ip: (nil)) at (unknown file) Allocations: 15140285 (Pool: 15139617; Big: 668); GC: 12 [11] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/precompile.jl:34 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /cache/build/builder-amdci5-4/julialang/julia-release-1-dot-12/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#398 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 #634 at ./asyncevent.jl:359 jfptr_YY.634_15147.1 at /opt/julia/lib/julia/sys.so (unknown line) jl_apply at /cache/build/builder-amdci5-4/julialang/julia-release-1-dot-12/src/julia.h:2391 [inlined] start_task at /cache/build/builder-amdci5-4/julialang/julia-release-1-dot-12/src/task.c:1252 unknown function (ip: (nil)) at (unknown file) Allocations: 19573775 (Pool: 19572736; Big: 1039); GC: 17 PkgEval terminated after 2737.13s: test duration exceeded the time limit