Package evaluation to test DiagrammaticEquations on Julia 1.12.6 (15346901f00) started at 2026-06-29T12:07:25.814 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 6.44s ################################################################################ # Installation # Installing DiagrammaticEquations... Resolving package versions... ┌ Warning: tarball content does not match git-tree-sha1 └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:814 Cloning [227ef7b5-1206-438b-ac65-934d6da304b8] ACSets from https://github.com/AlgebraicJulia/ACSets.jl.git Installed ACSets ─ v0.2.29 Updating `~/.julia/environments/v1.12/Project.toml` [6f00c28b] + DiagrammaticEquations v0.2.7 Updating `~/.julia/environments/v1.12/Manifest.toml` [227ef7b5] + ACSets v0.2.29 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.45 [79e6a3ab] + Adapt v4.7.0 [23cfdc9f] + AlgebraicInterfaces v0.1.4 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.27.0 [e2ed5e7c] + Bijections v0.2.2 [134e5e36] + Catlab v0.17.6 [d360d2e6] + ChainRulesCore v1.26.1 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 ⌅ [861a8166] + Combinatorics v1.0.2 [0fb5dd42] + CompTime v0.1.2 [34da2185] + Compat v4.18.1 [a81c6b42] + Compose v0.9.7 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.6 [e2d170a0] + DataValueInterfaces v1.0.0 [6f00c28b] + DiagrammaticEquations v0.2.7 [ffbed154] + DocStringExtensions v0.9.5 [7c1d4256] + DynamicPolynomials v0.6.6 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [1fa38f19] + Format v1.3.7 [f0ffcf3b] + GATlab v0.2.4 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 ⌅ [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [9c8b4983] + LightXML v0.9.3 [2ab3a3ac] + LogExpFunctions v1.0.1 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [442fdcdd] + Measures v0.3.3 [e1d29d7a] + Missings v1.2.0 [102ac46a] + MultivariatePolynomials v0.5.19 [d8a4904e] + MutableArithmetics v1.8.0 [77ba4419] + NaNMath v1.1.4 ⌅ [bac558e1] + OrderedCollections v1.8.2 [12d937ae] + PEG v1.0.4 [69de0a69] + Parsers v2.8.6 [2ae35dd2] + Permutations v0.4.23 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [43287f4e] + PtrArrays v1.4.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.21 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.3 [276daf66] + SpecialFunctions v2.8.0 [0c0c59c1] + StarAlgebras v0.3.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [892a3eda] + StringManipulation v0.4.4 [6ec83bb0] + StructEquality v2.1.0 [856f2bd8] + StructTypes v1.11.0 [2efcf032] + SymbolicIndexingInterface v0.3.49 ⌅ [d1185830] + SymbolicUtils v3.32.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.13.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [a759f4b9] + TimerOutputs v0.5.29 [a7c27f48] + Unityper v0.1.6 [61579ee1] + Ghostscript_jll v9.55.1+0 [aacddb02] + JpegTurbo_jll v3.1.5+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [02c8fc9c] + XML2_jll v2.15.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 7.34s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 2942.8 ms ✓ Combinatorics 764.3 ms ✓ TaskLocalValues 3715.1 ms ✓ Unityper 818.5 ms ✓ TermInterface 6094.7 ms ✓ ExproniconLite 3472.7 ms ✓ Bijections 14090.8 ms ✓ Krylov 6224.6 ms ✓ SymbolicIndexingInterface 781.2 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 7709.3 ms ✓ Latexify 6597.5 ms ✓ MultivariatePolynomials 6117.5 ms ✓ MeshIO 24363.3 ms ✓ ArrayLayouts 72692.8 ms ✓ GATlab 6800.6 ms ✓ Compose 1008.6 ms ✓ Permutations 2223.5 ms ✓ SymbolicIndexingInterface → SymbolicIndexingInterfacePrettyTablesExt 1840.9 ms ✓ Latexify → SparseArraysExt 6487.3 ms ✓ DynamicPolynomials 4625.7 ms ✓ MultivariatePolynomials → MultivariatePolynomialsChainRulesCoreExt 2860.1 ms ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt 91362.2 ms ✓ ACSets 90456.6 ms ✓ SymbolicUtils 6325.1 ms ✓ LazyArrays 244131.0 ms ✓ Catlab 3132.9 ms ✓ LazyArrays → LazyArraysStaticArraysExt 205804.8 ms ✓ DiagrammaticEquations 355105.6 ms ✓ CombinatorialSpaces 28 dependencies successfully precompiled in 1181 seconds. 140 already precompiled. 1 dependency had output during precompilation: ┌ DiagrammaticEquations │ WARNING: Constructor for type "Decapode" was extended in `DiagrammaticEquations` without explicit qualification or import. │ NOTE: Assumed "Decapode" refers to `DecapodeACSet.Decapode`. This behavior is deprecated and may differ in future versions.` │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Decapode end`. │ Hint: To silence the warning, qualify `Decapode` as `DecapodeACSet.Decapode` in the method signature or explicitly `import DecapodeACSet: Decapode`. │ WARNING: Constructor for type "SummationDecapode" was extended in `DiagrammaticEquations` without explicit qualification or import. │ NOTE: Assumed "SummationDecapode" refers to `DecapodeACSet.SummationDecapode`. This behavior is deprecated and may differ in future versions.` │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function SummationDecapode end`. │ Hint: To silence the warning, qualify `SummationDecapode` as `DecapodeACSet.SummationDecapode` in the method signature or explicitly `import DecapodeACSet: SummationDecapode`. │ WARNING: Constructor for type "Term" was extended in `Parser` without explicit qualification or import. │ NOTE: Assumed "Term" refers to `.Term`. This behavior is deprecated and may differ in future versions.` │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Term end`. │ Hint: To silence the warning, qualify `Term` as `.Term` in the method signature or explicitly `import : Term`. │ WARNING: Constructor for type "Equation" was extended in `Parser` without explicit qualification or import. │ NOTE: Assumed "Equation" refers to `decapodes.Equation`. This behavior is deprecated and may differ in future versions.` │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Equation end`. │ Hint: To silence the warning, qualify `Equation` as `decapodes.Equation` in the method signature or explicitly `import decapodes: Equation`. │ WARNING: Constructor for type "Term" was extended in `DiagrammaticEquations` without explicit qualification or import. │ NOTE: Assumed "Term" refers to `decapodes.Term`. This behavior is deprecated and may differ in future versions.` │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Term end`. │ Hint: To silence the warning, qualify `Term` as `decapodes.Term` in the method signature or explicitly `import decapodes: Term`. └ Precompilation completed after 1192.46s ################################################################################ # Testing # Testing DiagrammaticEquations Status `/tmp/jl_Db9Am5/Project.toml` [227ef7b5] ACSets v0.2.29 [4c88cf16] Aqua v0.8.16 [134e5e36] Catlab v0.17.6 [b1c52339] CombinatorialSpaces v0.10.1 [6f00c28b] DiagrammaticEquations v0.2.7 [d8e11817] MLStyle v0.4.17 [12d937ae] PEG v1.0.4 ⌅ [d1185830] SymbolicUtils v3.32.0 [37e2e46d] LinearAlgebra v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Db9Am5/Manifest.toml` [227ef7b5] ACSets v0.2.29 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.45 [79e6a3ab] Adapt v4.7.0 [23cfdc9f] AlgebraicInterfaces v0.1.4 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.16 [4fba245c] ArrayInterface v7.27.0 [4c555306] ArrayLayouts v1.12.2 [a9b6321e] Atomix v1.1.3 [e2ed5e7c] Bijections v0.2.2 [134e5e36] Catlab v0.17.6 [d360d2e6] ChainRulesCore v1.26.1 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [b1c52339] CombinatorialSpaces v0.10.1 ⌅ [861a8166] Combinatorics v1.0.2 [0fb5dd42] CompTime v0.1.2 [34da2185] Compat v4.18.1 [a81c6b42] Compose v0.9.7 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.6 [e2d170a0] DataValueInterfaces v1.0.0 [6f00c28b] DiagrammaticEquations v0.2.7 [ffbed154] DocStringExtensions v0.9.5 [7c1d4256] DynamicPolynomials v0.6.6 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [5789e2e9] FileIO v1.19.0 [1a297f60] FillArrays v1.16.0 ⌅ [53c48c17] FixedPointNumbers v0.8.6 [1fa38f19] Format v1.3.7 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v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... Info Given DiagrammaticEquations was explicitly requested, output will be shown live  WARNING: Constructor for type "Decapode" was extended in `DiagrammaticEquations` without explicit qualification or import.  NOTE: Assumed "Decapode" refers to `DecapodeACSet.Decapode`. This behavior is deprecated and may differ in future versions.`  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Decapode end`.  Hint: To silence the warning, qualify `Decapode` as `DecapodeACSet.Decapode` in the method signature or explicitly `import DecapodeACSet: Decapode`. WARNING: Constructor for type "SummationDecapode" was extended in `DiagrammaticEquations` without explicit qualification or import.  NOTE: Assumed "SummationDecapode" refers to `DecapodeACSet.SummationDecapode`. This behavior is deprecated and may differ in future versions.`  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function SummationDecapode end`.  Hint: To silence the warning, qualify `SummationDecapode` as `DecapodeACSet.SummationDecapode` in the method signature or explicitly `import DecapodeACSet: SummationDecapode`. WARNING: Constructor for type "Term" was extended in `Parser` without explicit qualification or import.  NOTE: Assumed "Term" refers to `.Term`. This behavior is deprecated and may differ in future versions.`  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Term end`.  Hint: To silence the warning, qualify `Term` as `.Term` in the method signature or explicitly `import : Term`. WARNING: Constructor for type "Equation" was extended in `Parser` without explicit qualification or import.  NOTE: Assumed "Equation" refers to `decapodes.Equation`. This behavior is deprecated and may differ in future versions.`  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Equation end`.  Hint: To silence the warning, qualify `Equation` as `decapodes.Equation` in the method signature or explicitly `import decapodes: Equation`. WARNING: Constructor for type "Term" was extended in `DiagrammaticEquations` without explicit qualification or import.  NOTE: Assumed "Term" refers to `decapodes.Term`. This behavior is deprecated and may differ in future versions.`  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Term end`.  Hint: To silence the warning, qualify `Term` as `decapodes.Term` in the method signature or explicitly `import decapodes: Term`. 167545.0 ms ✓ DiagrammaticEquations 1 dependency successfully precompiled in 169 seconds. 144 already precompiled. 1 dependency had output during precompilation: ┌ DiagrammaticEquations │ [Output was shown above] └ Test Summary: | Pass Total Time Composition | 22 22 6m52.2s Test Summary: | Pass Broken Total Time Language | 489 2 491 2m01.9s Test Summary: | Pass Total Time Visualization | 28 28 8.4s Test Summary: | Pass Total Time Average Rewriting | 11 11 5.4s Test Summary: | Pass Total Time Redundant Literals | 4 4 7.0s Test Summary: | Pass Total Time Bundling | 17 17 13.4s ┌ Warning: `enqueue!(q::Queue, x)` is deprecated, use `Base.push!(q, x)` instead. │ caller = downset!(e::SummationDecapode{Any, Any, Symbol}, d::SummationDecapode{Any, Any, Symbol}, var_names::Vector{Symbol}) at acset.jl:1061 └ @ Core ~/.julia/packages/DiagrammaticEquations/YemjB/src/acset.jl:1061 ┌ Warning: `dequeue!(q::Queue)` is deprecated, use `Base.popfirst!(q)` instead. │ caller = downset!(e::SummationDecapode{Any, Any, Symbol}, d::SummationDecapode{Any, Any, Symbol}, var_names::Vector{Symbol}) at acset.jl:1067 └ @ Core ~/.julia/packages/DiagrammaticEquations/YemjB/src/acset.jl:1067 ┌ Warning: `enqueue!(q::Queue, x)` is deprecated, use `Base.push!(q, x)` instead. │ caller = downset!(e::SummationDecapode{Any, Any, Symbol}, d::SummationDecapode{Any, Any, Symbol}, var_names::Vector{Symbol}) at acset.jl:1075 └ @ Core ~/.julia/packages/DiagrammaticEquations/YemjB/src/acset.jl:1075 Test Summary: | Pass Total Time Downset | 57 57 11.5s Test Summary: | Pass Total Time Collages | 5 5 1.8s Test Summary: | Pass Total Time SummationDecapode Deconstruction | 9 9 1.5s Test Summary: | Pass Total Time Open Operators | 13 13 8.3s Test Summary: | Pass Total Time Symbolic Rewriting | 32 32 58.3s Test Summary: | Pass Broken Total Time ThDEC Symbolics | 120 4 124 35.0s Test Summary: | Pass Total Time PEG Parser | 213 213 40.0s Test Summary: | Pass Total Time Code quality (Aqua.jl) | 8 8 1m29.6s Testing DiagrammaticEquations tests passed Testing completed after 823.58s PkgEval succeeded after 2047.42s