Package evaluation to test ACSets on Julia 1.12.6 (15346901f00) started at 2026-06-29T11:50:22.487 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 6.25s ################################################################################ # Installation # Installing ACSets... Resolving package versions... ┌ Warning: tarball content does not match git-tree-sha1 └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:814 Cloning [227ef7b5-1206-438b-ac65-934d6da304b8] ACSets from https://github.com/AlgebraicJulia/ACSets.jl.git Installed ACSets ─ v0.2.29 Updating `~/.julia/environments/v1.12/Project.toml` [227ef7b5] + ACSets v0.2.29 Updating `~/.julia/environments/v1.12/Manifest.toml` [227ef7b5] + ACSets v0.2.29 [23cfdc9f] + AlgebraicInterfaces v0.1.4 [861a8166] + Combinatorics v1.1.0 [0fb5dd42] + CompTime v0.1.2 [34da2185] + Compat v4.18.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [e2d170a0] + DataValueInterfaces v1.0.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 ⌅ [bac558e1] + OrderedCollections v1.8.2 [12d937ae] + PEG v1.0.4 [69de0a69] + Parsers v2.8.6 [2ae35dd2] + Permutations v0.4.23 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [189a3867] + Reexport v1.2.2 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [892a3eda] + StringManipulation v0.4.4 [6ec83bb0] + StructEquality v2.1.0 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.13.0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.89s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 887.0 ms ✓ AlgebraicInterfaces 788.7 ms ✓ LaTeXStrings 842.7 ms ✓ InvertedIndices 1625.2 ms ✓ InlineStrings 873.4 ms ✓ UnsafePointers 1177.1 ms ✓ URIs 868.3 ms ✓ ArgCheck 816.6 ms ✓ PEG 865.5 ms ✓ InputBuffers 924.2 ms ✓ WinReg 8204.8 ms ✓ CompTime 1091.3 ms ✓ ZipFile 1009.4 ms ✓ PooledArrays 1926.4 ms ✓ SentinelArrays 4111.0 ms ✓ StructTypes 900.9 ms ✓ Scratch 1458.3 ms ✓ CodecInflate64 845.1 ms ✓ StructUtils → StructUtilsTablesExt 824.6 ms ✓ StructUtils → StructUtilsStaticArraysCoreExt 933.5 ms ✓ Compat → CompatLinearAlgebraExt 3105.7 ms ✓ StringManipulation 1700.2 ms ✓ nauty_jll 929.2 ms ✓ Pidfile 2291.9 ms ✓ micromamba_jll 2355.8 ms ✓ pixi_jll 905.2 ms ✓ InlineStrings → ParsersExt 1386.0 ms ✓ JSONSchema 3493.4 ms ✓ JavaCall 12248.3 ms ✓ JSON3 8880.2 ms ✓ ZipArchives 844.7 ms ✓ StructEquality 36755.8 ms ✓ PrettyTables 2463.4 ms ✓ MicroMamba 1126.1 ms ✓ JSONSchema → JSONSchemaJSON3Ext 2405.9 ms ✓ XLSX 111548.1 ms ✓ DataFrames 29851.3 ms ✓ ACSets 13173.1 ms ✓ CondaPkg 8208.6 ms ✓ ACSets → XLSXACSetsExt 4403.1 ms ✓ ACSets → NautyACSetsExt 5243.5 ms ✓ ACSets → DataFramesACSetsExt 36885.1 ms ✓ PythonCall 42 dependencies successfully precompiled in 322 seconds. 66 already precompiled. Precompilation completed after 336.16s ################################################################################ # Testing # Testing ACSets Status `/tmp/jl_jWJs3o/Project.toml` [227ef7b5] ACSets v0.2.29 [992eb4ea] CondaPkg v0.2.36 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.5 [682c06a0] JSON v1.6.1 [0f8b85d8] JSON3 v1.14.3 [7d188eb4] JSONSchema v1.5.0 [494afd89] JavaCall v0.8.1 [d8e11817] MLStyle v0.4.17 [2ae35dd2] Permutations v0.4.23 [6099a3de] PythonCall v0.9.35 [90137ffa] StaticArrays v1.9.18 [bd369af6] Tables v1.13.0 ⌃ [fdbf4ff8] XLSX v0.10.4 [55c6dc9b] nauty_jll v2.8.10+1 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_jWJs3o/Manifest.toml` [227ef7b5] ACSets v0.2.29 [23cfdc9f] AlgebraicInterfaces v0.1.4 [dce04be8] ArgCheck v2.5.0 [6309b1aa] CodecInflate64 v0.1.3 [944b1d66] CodecZlib v0.7.8 [861a8166] Combinatorics v1.1.0 [0fb5dd42] CompTime v0.1.2 [34da2185] Compat v4.18.1 [992eb4ea] CondaPkg v0.2.36 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [8f5d6c58] EzXML v1.2.3 [842dd82b] InlineStrings v1.4.5 [0c81fc1b] InputBuffers v1.1.1 [41ab1584] InvertedIndices v1.3.1 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [0f8b85d8] JSON3 v1.14.3 [7d188eb4] JSONSchema v1.5.0 [494afd89] JavaCall v0.8.1 [b964fa9f] LaTeXStrings v1.4.0 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.16 [0b3b1443] MicroMamba v0.1.15 [e1d29d7a] Missings v1.2.0 ⌅ [bac558e1] OrderedCollections v1.8.2 [12d937ae] PEG v1.0.4 [69de0a69] Parsers v2.8.6 [2ae35dd2] Permutations v0.4.23 [fa939f87] Pidfile v1.3.0 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [6099a3de] PythonCall v0.9.35 [189a3867] Reexport v1.2.2 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.10 [a2af1166] SortingAlgorithms v1.2.3 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [892a3eda] StringManipulation v0.4.4 [6ec83bb0] StructEquality v2.1.0 [856f2bd8] StructTypes v1.11.0 [ec057cc2] StructUtils v2.8.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.13.0 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [e17b2a0c] UnsafePointers v1.0.0 [1b915085] WinReg v1.0.0 ⌃ [fdbf4ff8] XLSX v0.10.4 [49080126] ZipArchives v2.6.0 [a5390f91] ZipFile v0.10.1 [94ce4f54] Libiconv_jll v1.18.0+0 [02c8fc9c] XML2_jll v2.15.3+0 [f8abcde7] micromamba_jll v2.3.1+0 [55c6dc9b] nauty_jll v2.8.10+1 [4d7b5844] pixi_jll v0.63.2+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.4+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Utilities | 7 7 4.0s Test Summary: | Pass Total Time Mappings | 30 30 1.8s Test Summary: | Pass Total Time Columns | 84 84 10.3s Test Summary: | Pass Total Time Schemas | 30 30 6.5s Test Summary: | Pass Total Time ACSets | 1094 1094 3m35.0s Test Summary: | Pass Total Time Parsers | 38 38 15.9s Precompiling packages... 2123.9 ms ✓ StructUtils → StructUtilsStaticArraysCoreExt 1 dependency successfully precompiled in 2 seconds. 6 already precompiled. Test Summary: | Pass Total Time Serialization | 23 23 1m20.7s Precompiling packages... 3488.3 ms ✓ JavaCall 1 dependency successfully precompiled in 4 seconds. 6 already precompiled. ┌ Warning: JavaCall needs the environment variable `JULIA_COPY_STACKS` to be `1` or `yes`. │ Calling the JVM may result in undefined behavior. └ @ JavaCall ~/.julia/packages/JavaCall/sPJJR/src/JavaCall.jl:57 ┌ Warning: Conversion to OrderedDict is deprecated for unordered associative containers (in this case, Dict{Symbol, Any}). Use an ordered or sorted associative type, such as SortedDict and OrderedDict. │ caller = Object at InterTypes.jl:237 [inlined] └ @ Core ~/.julia/packages/ACSets/WnKdX/src/intertypes/InterTypes.jl:237 Precompiling packages... 29372.1 ms ✓ PythonCall 1 dependency successfully precompiled in 30 seconds. 51 already precompiled. CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/5WGSP/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/lKlVY/CondaPkg.toml CondaPkg Resolving changes + libstdcxx + libstdcxx-ng + openssl + python CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/4ae17cee0bd922f66b2c72bf2f01c22481a5ec19/bin/pixi │ init │ --format pixi └ /tmp/jl_jWJs3o/.CondaPkg ✔ Created /tmp/jl_jWJs3o/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_jWJs3o/.CondaPkg/pixi.toml │ [dependencies] │ openssl = ">=3, <3.6" │ libstdcxx = ">=3.4,<15.0" │ libstdcxx-ng = ">=3.4,<15.0" │ │ [dependencies.python] │ channel = "conda-forge" │ build = "*cp*" │ version = ">=3.10,!=3.14.0,!=3.14.1,<4" │ │ [workspace] │ name = ".CondaPkg" │ platforms = ["linux-64"] │ channels = ["conda-forge"] │ channel-priority = "strict" └ description = "automatically generated by CondaPkg.jl" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/4ae17cee0bd922f66b2c72bf2f01c22481a5ec19/bin/pixi │ install └ --manifest-path /tmp/jl_jWJs3o/.CondaPkg/pixi.toml ✔ The default environment has been installed. CondaPkg Found dependencies: /tmp/jl_jWJs3o/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/5WGSP/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/lKlVY/CondaPkg.toml CondaPkg Resolving changes + pydantic CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/4ae17cee0bd922f66b2c72bf2f01c22481a5ec19/bin/pixi │ init │ --format pixi └ /tmp/jl_jWJs3o/.CondaPkg ✔ Created /tmp/jl_jWJs3o/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_jWJs3o/.CondaPkg/pixi.toml │ [dependencies] │ openssl = ">=3, <3.6" │ libstdcxx = ">=3.4,<15.0" │ libstdcxx-ng = ">=3.4,<15.0" │ pydantic = "*" │ │ [dependencies.python] │ channel = "conda-forge" │ build = "*cp*" │ version = ">=3.10,!=3.14.0,!=3.14.1,<4" │ │ [workspace] │ name = ".CondaPkg" │ platforms = ["linux-64"] │ channels = ["conda-forge"] │ channel-priority = "strict" └ description = "automatically generated by CondaPkg.jl" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/4ae17cee0bd922f66b2c72bf2f01c22481a5ec19/bin/pixi │ install └ --manifest-path /tmp/jl_jWJs3o/.CondaPkg/pixi.toml ✔ The default environment has been installed. CondaPkg Found dependencies: /tmp/jl_jWJs3o/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/5WGSP/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/lKlVY/CondaPkg.toml CondaPkg Resolving changes + acsets (pip) + uv CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/4ae17cee0bd922f66b2c72bf2f01c22481a5ec19/bin/pixi │ init │ --format pixi └ /tmp/jl_jWJs3o/.CondaPkg ✔ Created /tmp/jl_jWJs3o/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_jWJs3o/.CondaPkg/pixi.toml │ [dependencies] │ openssl = ">=3, <3.6" │ libstdcxx = ">=3.4,<15.0" │ uv = ">=0.4" │ libstdcxx-ng = ">=3.4,<15.0" │ pydantic = "*" │ │ [dependencies.python] │ channel = "conda-forge" │ build = "*cp*" │ version = ">=3.10,!=3.14.0,!=3.14.1,<4" │ │ [workspace] │ name = ".CondaPkg" │ platforms = ["linux-64"] │ channels = ["conda-forge"] │ channel-priority = "strict" │ description = "automatically generated by CondaPkg.jl" │ │ [pypi-dependencies] └ acsets = "*" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/4ae17cee0bd922f66b2c72bf2f01c22481a5ec19/bin/pixi │ install └ --manifest-path /tmp/jl_jWJs3o/.CondaPkg/pixi.toml ✔ The default environment has been installed. /tmp/jl_jWJs3o/.CondaPkg/.pixi/envs/default/lib/python3.14/site-packages/acsets/acsets.py:353: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\s"? A raw string is also an option. A list of of `Ob`\s /tmp/jl_jWJs3o/.CondaPkg/.pixi/envs/default/lib/python3.14/site-packages/acsets/acsets.py:362: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\s"? A raw string is also an option. A list of of `Hom`\s /tmp/jl_jWJs3o/.CondaPkg/.pixi/envs/default/lib/python3.14/site-packages/acsets/acsets.py:371: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\s"? A raw string is also an option. A list of of `AttrType`\s /tmp/jl_jWJs3o/.CondaPkg/.pixi/envs/default/lib/python3.14/site-packages/acsets/acsets.py:380: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\s"? A raw string is also an option. A list of of `Attr`\s /tmp/jl_jWJs3o/.CondaPkg/.pixi/envs/default/lib/python3.14/site-packages/pydantic/_internal/_config.py:386: UserWarning: Valid config keys have changed in V2: * 'allow_mutation' has been removed warnings.warn(message, UserWarning) ┌ Warning: Conversion to OrderedDict is deprecated for unordered associative containers (in this case, Dict{Symbol, Any}). Use an ordered or sorted associative type, such as SortedDict and OrderedDict. │ caller = Object at InterTypes.jl:237 [inlined] └ @ Core ~/.julia/packages/ACSets/WnKdX/src/intertypes/InterTypes.jl:237 Test Summary: | Pass Total Time InterTypes | 35 35 2m40.1s Test Summary: | Pass Total Time ADTs | 19 19 14.7s Precompiling packages... 1194.8 ms ✓ StaticArrays → StaticArraysStatisticsExt 1 dependency successfully precompiled in 1 seconds. 9 already precompiled. Test Summary: | Pass Total Time Query | 30 30 30.6s Test Summary: | Pass Total Time Nauty | 17 17 43.0s Testing ACSets tests passed Testing completed after 589.44s PkgEval succeeded after 956.86s