Package evaluation to test MixedModels on Julia 1.12.5 (c8beb9ca3a*) started at 2026-03-15T09:54:23.733 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 5.26s ################################################################################ # Installation # Installing MixedModels... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [ff71e718] + MixedModels v5.3.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [79e6a3ab] + Adapt v4.5.0 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.12.2 [69666777] + Arrow v2.8.1 [31f734f8] + ArrowTypes v2.3.0 [093aae92] + BSplineKit v0.19.2 [aae01518] + BandedMatrices v1.11.0 [c3b6d118] + BitIntegers v0.3.7 [fa961155] + CEnum v0.5.0 [5ba52731] + CodecLz4 v0.4.6 [6b39b394] + CodecZstd v0.8.7 [861a8166] + Combinatorics v1.1.0 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [85a47980] + Dictionaries v0.4.6 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.7 [e2ba6199] + ExprTools v0.1.10 [442a2c76] + FastGaussQuadrature v1.1.0 [1a297f60] + FillArrays v1.16.0 [f6369f11] + ForwardDiff v1.3.2 [38e38edf] + GLM v1.9.3 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [313cdc1a] + Indexing v1.1.1 [842dd82b] + InlineStrings v1.4.5 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [0f8b85d8] + JSON3 v1.14.3 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [ff71e718] + MixedModels v5.3.0 [7e9fb7ac] + MixedModelsDatasets v0.1.2 [78c3b35d] + Mocking v0.8.1 [76087f3c] + NLopt v1.2.1 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [545c379f] + RegressionFormulae v0.1.4 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [431bcebd] + SciMLPublic v1.0.1 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.7.1 [03a91e81] + SplitApplyCombine v1.2.3 [aedffcd0] + Static v1.3.1 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.9 [354b36f9] + StringViews v1.3.7 [856f2bd8] + StructTypes v1.11.0 [dc5dba14] + TZJData v1.5.0+2025b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [f269a46b] + TimeZones v1.22.2 [3bb67fe8] + TranscodingStreams v0.11.3 [9d95f2ec] + TypedTables v1.4.6 [5ced341a] + Lz4_jll v1.10.1+0 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Installation completed after 4.13s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 2665.9 ms ✓ TestEnv 1 dependency successfully precompiled in 3 seconds. 26 already precompiled. Precompiling package dependencies... Precompiling packages... 1585.9 ms ✓ Combinatorics 794.3 ms ✓ StringViews 619.2 ms ✓ LaTeXStrings 636.7 ms ✓ ExprTools 551.1 ms ✓ IteratorInterfaceExtensions 729.6 ms ✓ StatsAPI 2458.8 ms ✓ CEnum 1318.1 ms ✓ FillArrays 696.7 ms ✓ InverseFunctions 808.3 ms ✓ Statistics 4968.3 ms ✓ MacroTools 645.2 ms ✓ TZJData 610.6 ms ✓ ShiftedArrays 2655.1 ms ✓ OrderedCollections 853.2 ms ✓ Requires 539.7 ms ✓ DataValueInterfaces 619.0 ms ✓ EnumX 662.5 ms ✓ StableRNGs 544.3 ms ✓ Reexport 788.6 ms ✓ DocStringExtensions 1252.6 ms ✓ InlineStrings 3470.2 ms ✓ IrrationalConstants 2680.3 ms ✓ BitIntegers 583.1 ms ✓ PtrArrays 957.7 ms ✓ TranscodingStreams 2478.4 ms ✓ NaNMath 599.5 ms ✓ InvertedIndices 679.7 ms ✓ ArrowTypes 553.7 ms ✓ IfElse 2593.4 ms ✓ ConstructionBase 556.8 ms ✓ CommonWorldInvalidations 588.1 ms ✓ DataAPI 3273.0 ms ✓ Crayons 580.8 ms ✓ Indexing 633.6 ms ✓ SciMLPublic 684.0 ms ✓ StaticArraysCore 1537.2 ms ✓ ConcurrentUtilities 540.3 ms ✓ Suppressor 1317.6 ms ✓ ProgressMeter 1227.6 ms ✓ PDMats 1446.4 ms ✓ SentinelArrays 2949.6 ms ✓ StructTypes 600.1 ms ✓ Scratch 792.0 ms ✓ Preferences 2699.2 ms ✓ Compat 505.1 ms ✓ TableTraits 980.2 ms ✓ FillArrays → FillArraysSparseArraysExt 1197.1 ms ✓ InverseFunctions → InverseFunctionsTestExt 610.2 ms ✓ InverseFunctions → InverseFunctionsDatesExt 867.6 ms ✓ Statistics → SparseArraysExt 627.1 ms ✓ FillArrays → FillArraysStatisticsExt 1145.1 ms ✓ CommonSubexpressions 2438.9 ms ✓ DataStructures 649.8 ms ✓ Adapt 2083.0 ms ✓ TypeUtils 997.9 ms ✓ LogExpFunctions 663.7 ms ✓ AliasTables 565.5 ms ✓ InlineStrings → ArrowTypesExt 549.0 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 694.3 ms ✓ PooledArrays 2512.8 ms ✓ Missings 1311.1 ms ✓ Dictionaries 581.5 ms ✓ DiffResults 915.2 ms ✓ FillArrays → FillArraysPDMatsExt 791.8 ms ✓ JLLWrappers 590.7 ms ✓ PrecompileTools 628.7 ms ✓ Compat → CompatLinearAlgebraExt 2955.6 ms ✓ Tables 738.3 ms ✓ SortingAlgorithms 3301.9 ms ✓ QuadGK 830.4 ms ✓ Adapt → AdaptSparseArraysExt 2640.6 ms ✓ ArrayInterface 541.6 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 2037.0 ms ✓ Setfield 1063.6 ms ✓ SplitApplyCombine 1002.2 ms ✓ Lz4_jll 943.7 ms ✓ Rmath_jll 948.1 ms ✓ PRIMA_jll 948.9 ms ✓ NLopt_jll 989.6 ms ✓ Zstd_jll 991.4 ms ✓ OpenSpecFun_jll 12139.7 ms ✓ StaticArrays 2424.0 ms ✓ StringManipulation 14401.9 ms ✓ Parsers 40674.6 ms ✓ ExplicitImports 5065.3 ms ✓ Static 815.5 ms ✓ Mocking 4021.0 ms ✓ Aqua 3793.5 ms ✓ CategoricalArrays 4870.4 ms ✓ StatsBase 811.7 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 514.9 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 2786.4 ms ✓ TypedTables 1352.1 ms ✓ CodecLz4 1063.4 ms ✓ Rmath 1316.9 ms ✓ PRIMA 1445.3 ms ✓ NLopt 1372.1 ms ✓ CodecZstd 3920.3 ms ✓ SpecialFunctions 886.2 ms ✓ StaticArrays → StaticArraysStatisticsExt 955.0 ms ✓ FillArrays → FillArraysStaticArraysExt 920.9 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 876.7 ms ✓ Adapt → AdaptStaticArraysExt 31210.5 ms ✓ PrettyTables 11912.0 ms ✓ JSON3 652.3 ms ✓ InlineStrings → ParsersExt 7037.0 ms ✓ TimeZones 674.7 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt 704.8 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 934.9 ms ✓ PDMats → StatsBaseExt 1007.8 ms ✓ CategoricalArrays → CategoricalArraysStatsBaseExt 890.2 ms ✓ FiniteDiff 2758.4 ms ✓ FastGaussQuadrature 1628.7 ms ✓ HypergeometricFunctions 877.8 ms ✓ DiffRules 16241.2 ms ✓ ArrayLayouts 60358.1 ms ✓ DataFrames 740.9 ms ✓ JSON3 → JSON3ArrowExt 10552.8 ms ✓ Arrow 810.0 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 864.9 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 3520.2 ms ✓ StatsFuns 6597.4 ms ✓ ForwardDiff 2116.5 ms ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt 18488.6 ms ✓ BandedMatrices 5766.0 ms ✓ MixedModelsDatasets 4177.0 ms ✓ CategoricalArrays → CategoricalArraysArrowExt 658.8 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 3067.9 ms ✓ StatsModels 6322.3 ms ✓ Distributions 1105.1 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 3000.7 ms ✓ BandedMatrices → BandedMatricesSparseArraysExt 2579.6 ms ✓ ArrayInterface → ArrayInterfaceBandedMatricesExt 2586.3 ms ✓ FiniteDiff → FiniteDiffBandedMatricesExt 2195.5 ms ✓ RegressionFormulae 2166.4 ms ✓ Distributions → DistributionsTestExt 3214.3 ms ✓ GLM 16652.6 ms ✓ BSplineKit 101045.6 ms ✓ MixedModels 17150.6 ms ✓ MixedModels → MixedModelsPRIMAExt 17111.5 ms ✓ MixedModels → MixedModelsForwardDiffExt 16940.1 ms ✓ MixedModels → MixedModelsFiniteDiffExt 142 dependencies successfully precompiled in 593 seconds. 39 already precompiled. Precompilation completed after 607.29s ################################################################################ # Testing # Testing MixedModels Status `/tmp/jl_j06BHG/Project.toml` [4c88cf16] Aqua v0.8.14 [69666777] Arrow v2.8.1 [093aae92] BSplineKit v0.19.2 [324d7699] CategoricalArrays v1.0.2 [34da2185] Compat v4.18.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [31c24e10] Distributions v0.25.123 [7d51a73a] ExplicitImports v1.15.0 [6a86dc24] FiniteDiff v2.29.0 [f6369f11] ForwardDiff v1.3.2 [38e38edf] GLM v1.9.3 [0f8b85d8] JSON3 v1.14.3 [ff71e718] MixedModels v5.3.0 [7e9fb7ac] MixedModelsDatasets v0.1.2 [76087f3c] NLopt v1.2.1 [0a7d04aa] PRIMA v0.2.4 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [92933f4c] ProgressMeter v1.11.0 [545c379f] RegressionFormulae v0.1.4 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.18 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.9 [856f2bd8] StructTypes v1.11.0 [fd094767] Suppressor v0.2.8 [bd369af6] Tables v1.12.1 [9d95f2ec] TypedTables v1.4.6 [b77e0a4c] InteractiveUtils v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_j06BHG/Manifest.toml` [79e6a3ab] Adapt v4.5.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [4fba245c] ArrayInterface v7.23.0 [4c555306] ArrayLayouts v1.12.2 [69666777] Arrow v2.8.1 [31f734f8] ArrowTypes v2.3.0 [093aae92] BSplineKit v0.19.2 [aae01518] BandedMatrices v1.11.0 [c3b6d118] BitIntegers v0.3.7 [fa961155] CEnum v0.5.0 [324d7699] CategoricalArrays v1.0.2 [5ba52731] CodecLz4 v0.4.6 [6b39b394] CodecZstd v0.8.7 [861a8166] Combinatorics v1.1.0 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [85a47980] Dictionaries v0.4.6 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.7 [7d51a73a] ExplicitImports v1.15.0 [e2ba6199] ExprTools v0.1.10 [442a2c76] FastGaussQuadrature v1.1.0 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.29.0 [f6369f11] ForwardDiff v1.3.2 [38e38edf] GLM v1.9.3 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [313cdc1a] Indexing v1.1.1 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [ff71e718] MixedModels v5.3.0 [7e9fb7ac] MixedModelsDatasets v0.1.2 [78c3b35d] Mocking v0.8.1 [76087f3c] NLopt v1.2.1 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [0a7d04aa] PRIMA v0.2.4 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.2.3 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [545c379f] RegressionFormulae v0.1.4 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [431bcebd] SciMLPublic v1.0.1 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.7.1 [03a91e81] SplitApplyCombine v1.2.3 [860ef19b] StableRNGs v1.0.4 [aedffcd0] Static v1.3.1 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.9 [892a3eda] StringManipulation v0.4.4 [354b36f9] StringViews v1.3.7 [856f2bd8] StructTypes v1.11.0 [fd094767] Suppressor v0.2.8 [dc5dba14] TZJData v1.5.0+2025b [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [f269a46b] TimeZones v1.22.2 [3bb67fe8] TranscodingStreams v0.11.3 [c3b1956e] TypeUtils v1.14.0 [9d95f2ec] TypedTables v1.4.6 [5ced341a] Lz4_jll v1.10.1+0 [079eb43e] NLopt_jll v2.10.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [eead6e0c] PRIMA_jll v0.7.1+0 [f50d1b31] Rmath_jll v0.5.1+0 [3161d3a3] Zstd_jll v1.5.7+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Testing Running tests... ┌ Info: Julia Version 1.12.5 │ Commit c8beb9ca3a* (2026-03-09 19:37 UTC) │ Platform Info: │ OS: Linux (x86_64-linux-gnu) │ CPU: 128 × AMD EPYC 7502 32-Core Processor │ WORD_SIZE: 64 │ LLVM: libLLVM-18.1.7 (ORCJIT, znver2) │ GC: Built with stock GC │ Threads: 1 default, 0 interactive, 1 GC (on 1 virtual cores) │ Environment: │ JULIA_CPU_THREADS = 1 │ JULIA_NUM_PRECOMPILE_TASKS = 1 │ JULIA_PKG_PRECOMPILE_AUTO = 0 │ JULIA_PKGEVAL = true │ JULIA_DEPOT_PATH = /home/pkgeval/.julia:/usr/local/share/julia: │ JULIA_NUM_THREADS = 1 └ JULIA_LOAD_PATH = @:/tmp/jl_j06BHG [ Info: LBTConfig([ILP64] libopenblas64_.so) Test Summary: | Pass Total Time Aqua | 9 9 1m09.5s Test Summary: | Pass Total Time ExplicitImports | 2 2 45.0s Test Summary: | Pass Total Time average | 1 1 0.1s Test Summary: | Pass Total Time densify | 3 3 1.4s Test Summary: | Pass Total Time isconstant | 13 13 1.7s Test Summary: | Pass Total Time PCA | 3 3 33.7s Test Summary: | Pass Total Time formula | 2 2 24.2s Test Summary: | Pass Total Time formula misspecification | 8 8 11.7s Test Summary: | Pass Total Time non-unicode function aliases for exports | 2 2 0.0s WARNING: Method definition rank(LinearAlgebra.QRPivoted{T, S, C, P} where P<:(AbstractArray{var"#s4808", 1} where var"#s4808"<:Integer) where C<:AbstractArray{T, 1} where S<:AbstractArray{T, 2} where T) in module LinearAlgebra at /source/usr/share/julia/stdlib/v1.12/LinearAlgebra/src/qr.jl:560 overwritten in module Main at /home/pkgeval/.julia/packages/MixedModels/ACdLy/test/pivot.jl:8. WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(LinearAlgebra.rank), LinearAlgebra.QRPivoted{T, S, C, P} where P<:(AbstractArray{var"#s4808", 1} where var"#s4808"<:Integer) where C<:AbstractArray{T, 1} where S<:AbstractArray{T, 2} where T) in module LinearAlgebra at /source/usr/share/julia/stdlib/v1.12/LinearAlgebra/src/qr.jl:560 overwritten in module Main at /home/pkgeval/.julia/packages/MixedModels/ACdLy/test/pivot.jl:8. Test Summary: | Pass Total Time fullranknumeric | 1 1 1.0s Test Summary: | Pass Total Time fullrankcategorical | 2 2 3.8s Test Summary: | Pass Total Time dependentcolumn | 4 4 0.8s Test Summary: | Pass Total Time qr missing cells | 2 2 0.1s Test Summary: | Pass Total Time zero columns in X | 2 2 0.0s Test Summary: | Pass Total Time UBlk | 24 24 12.5s Test Summary: | Pass Total Time mul! | 36 36 1.2s ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = fit(::Type{LinearMixedModel}, f::FormulaTerm{Term, Tuple{ConstantTerm{Int64}, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{Y::Vector{Float64}, A::PooledVector{String, UInt32, Vector{UInt32}}, G::PooledVector{String, UInt32, Vector{UInt32}}, H::PooledVector{String, UInt32, Vector{UInt32}}}; weights::Vector{Any}, wts::Vector{Float64}, contrasts::Dict{Symbol, Any}, σ::Nothing, amalgamate::Bool, kwargs::Base.Pairs{Symbol, Bool, Nothing, @NamedTuple{progress::Bool}}) at linearmixedmodel.jl:219 └ @ Core ~/.julia/packages/MixedModels/ACdLy/src/linearmixedmodel.jl:219 Test Summary: | Pass Total Time reweight! | 2 2 9.6s Test Summary: | Pass Total Time rankupdate! | 2 2 2.0s Test Summary: | Pass Total Time lmulλ! | 1 1 8.2s Test Summary: | Pass Total Time Xymat | 10 10 0.7s Test Summary: | Pass Broken Total Time XymatSparse | 12 1 13 43.2s Test Summary: | Pass Total Time scalarReMat | 39 39 16.8s Test Summary: | Pass Total Time RandomEffectsTerm | 18 18 15.2s Test Summary: | Pass Total Time random effects term syntax | 24 24 24.1s Test Summary: | Pass Total Time Grouping | 1 1 0.3s Test Summary: | Pass Total Time Grouping pseudo-contrasts | 10 10 10.8s Test Summary: | Pass Broken Total Time Auto application of Grouping() | 36 3 39 11.8s Test Summary: | Pass Total Time LMM from MixedModel | 3 3 4.6s Test Summary: | Pass Total Time offset | 2 2 1.2s Test Summary: | Pass Total Time Dyestuff | 83 83 48.5s ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/ACdLy/src/MixedModelsNLoptExt.jl:132 ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/ACdLy/src/MixedModelsNLoptExt.jl:132 ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/ACdLy/src/MixedModelsNLoptExt.jl:132 ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/ACdLy/src/MixedModelsNLoptExt.jl:132 ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/ACdLy/src/MixedModelsNLoptExt.jl:132 ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/ACdLy/src/MixedModelsNLoptExt.jl:132 Test Summary: | Pass Total Time Dyestuff2 | 11 11 4.6s Test Summary: | Pass Total Time penicillin | 26 26 4.4s Test Summary: | Pass Total Time pastes | 22 22 5.8s Test Summary: | Pass Total Time InstEval | 23 23 2.7s ┌ Warning: optsum was saved with an older version of MixedModels.jl: consider resaving. └ @ MixedModels ~/.julia/packages/MixedModels/ACdLy/src/serialization.jl:124 ┌ Warning: optsum was saved with an older version of MixedModels.jl: consider resaving. └ @ MixedModels ~/.julia/packages/MixedModels/ACdLy/src/serialization.jl:124 ┌ Warning: optsum was saved with an older version of MixedModels.jl: consider resaving. └ @ MixedModels ~/.julia/packages/MixedModels/ACdLy/src/serialization.jl:124 ┌ Warning: optsum was saved with an older version of MixedModels.jl: consider resaving. └ @ MixedModels ~/.julia/packages/MixedModels/ACdLy/src/serialization.jl:124 Test Summary: | Pass Total Time sleep | 135 135 59.9s Test Summary: | Pass Total Time d3 | 6 6 17.2s Test Summary: | Pass Total Time kb07 | 6 6 14.9s Test Summary: | Pass Total Time oxide | 1 1 9.1s Test Summary: | Pass Total Time Rank deficient | 7 7 3.6s Test Summary: | Pass Total Time coeftable | 1 1 0.0s ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = fit(::Type{LinearMixedModel}, f::FormulaTerm{Term, Tuple{ConstantTerm{Int64}, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{a::Vector{Float64}, b::Vector{Float64}, c::PooledVector{String, UInt32, Vector{UInt32}}, w1::Vector{Int64}, w2::Vector{Float64}}; weights::Vector{Any}, wts::Vector{Int64}, contrasts::Dict{Symbol, Any}, σ::Nothing, amalgamate::Bool, kwargs::Base.Pairs{Symbol, Bool, Nothing, @NamedTuple{progress::Bool}}) at linearmixedmodel.jl:219 └ @ Core ~/.julia/packages/MixedModels/ACdLy/src/linearmixedmodel.jl:219 Test Summary: | Pass Total Time wts | 3 3 2.6s Test Summary: | Pass Total Time unifying ReMat eltypes | 3 3 2.7s Test Summary: | Pass Total Time recovery from misscaling | 2 2 6.6s Test Summary: | Pass Total Time methods we don't define | 4 4 0.5s Test Summary: | Pass Total Time GLMM from MixedModel | 2 2 8.1s Test Summary: | Pass Total Time Type for instance | 9 9 0.2s Test Summary: | Pass Total Time contra | 41 41 12.2s ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = fit(::Type{GeneralizedLinearMixedModel}, f::FormulaTerm{FunctionTerm{typeof(/), Vector{Term}}, Tuple{ConstantTerm{Int64}, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{herd::Arrow.DictEncoded{String, Int8, Arrow.List{String, Int32, Vector{UInt8}}}, period::Arrow.DictEncoded{String, Int8, Arrow.List{String, Int32, Vector{UInt8}}}, incid::Arrow.Primitive{Int8, Vector{Int8}}, hsz::Arrow.Primitive{Int8, Vector{Int8}}}, d::Binomial{Float64}, l::LogitLink; weights::Vector{Any}, wts::Vector{Float64}, contrasts::Dict{Symbol, Any}, offset::Vector{Any}, amalgamate::Bool, kwargs::Base.Pairs{Symbol, Any, Nothing, @NamedTuple{progress::Bool, init_from_lmm::Vector{Symbol}}}) at generalizedlinearmixedmodel.jl:187 └ @ Core ~/.julia/packages/MixedModels/ACdLy/src/generalizedlinearmixedmodel.jl:187 ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = GeneralizedLinearMixedModel(f::FormulaTerm{FunctionTerm{typeof(/), Vector{Term}}, Tuple{ConstantTerm{Int64}, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::DataFrame, d::Binomial{Float64}, l::LogitLink; kwargs::Base.Pairs{Symbol, Vector{Float64}, Nothing, @NamedTuple{wts::Vector{Float64}}}) at generalizedlinearmixedmodel.jl:352 └ @ Core ~/.julia/packages/MixedModels/ACdLy/src/generalizedlinearmixedmodel.jl:352 Test Summary: | Pass Total Time cbpp | 19 19 15.4s Test Summary: | Pass Total Time verbagg | 4 4 13.1s Test Summary: | Pass Total Time grouseticks | 8 8 1m23.4s Test Summary: | Pass Total Time dispersion | 3 3 9.3s Test Summary: | Pass Total Time mmec | 4 4 3.1s ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = GeneralizedLinearMixedModel(f::FormulaTerm{FunctionTerm{typeof(/), Vector{Term}}, Tuple{ConstantTerm{Int64}, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::Arrow.Table, d::Binomial{Float64}, l::LogitLink; kwargs::Base.Pairs{Symbol, Arrow.Primitive{Int8, Vector{Int8}}, Nothing, @NamedTuple{wts::Arrow.Primitive{Int8, Vector{Int8}}}}) at generalizedlinearmixedmodel.jl:352 └ @ Core ~/.julia/packages/MixedModels/ACdLy/src/generalizedlinearmixedmodel.jl:352 Test Summary: | Pass Total Time GLMM saveoptsum | 6 6 2.0s Test Summary: | Pass Total Time Bad initial value | 2 2 10.2s Test Summary: | Pass Total Time GHnorm | 5 5 0.3s Test Summary: | Pass Total Time linear, and lmm wrapper | 8 8 0.6s Test Summary: | Pass Total Time generalized | 1 1 9.0s Test Summary: | Pass Total Time Normal-IdentityLink | 2 2 0.1s Test Summary: | Pass Total Time Normal Distribution GLMM | 1 1 1.6s Test Summary: | Pass Total Time Missing Omit | 2 2 3.1s ┌ Error: Random effects are not nested. └ @ MixedModels ~/.julia/packages/MixedModels/ACdLy/src/likelihoodratiotest.jl:253 ┌ Error: Fixed effects are not nested. └ @ MixedModels ~/.julia/packages/MixedModels/ACdLy/src/likelihoodratiotest.jl:231 ┌ Error: Inner models have grouping variables not present in outer models. └ @ MixedModels ~/.julia/packages/MixedModels/ACdLy/src/likelihoodratiotest.jl:240 Test Summary: | Pass Total Time isnested | 5 5 5.7s Test Summary: | Pass Total Time likelihoodratio test | 22 22 21.4s ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = fit(::Type{GeneralizedLinearMixedModel}, f::FormulaTerm{FunctionTerm{typeof(/), Vector{Term}}, Tuple{ConstantTerm{Int64}, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{herd::Arrow.DictEncoded{String, Int8, Arrow.List{String, Int32, Vector{UInt8}}}, period::Arrow.DictEncoded{String, Int8, Arrow.List{String, Int32, Vector{UInt8}}}, incid::Arrow.Primitive{Int8, Vector{Int8}}, hsz::Arrow.Primitive{Int8, Vector{Int8}}}, d::Binomial{Float64}, l::LogitLink; weights::Vector{Any}, wts::Vector{Float64}, contrasts::Dict{Symbol, Any}, offset::Vector{Any}, amalgamate::Bool, kwargs::Base.Pairs{Symbol, Bool, Nothing, @NamedTuple{progress::Bool}}) at generalizedlinearmixedmodel.jl:187 └ @ Core ~/.julia/packages/MixedModels/ACdLy/src/generalizedlinearmixedmodel.jl:187 Test Summary: | Pass Total Time simulate!(::MixedModel) | 9 9 13.1s ┌ Warning: Fixed-effects matrix is rank deficient └ @ MixedModels ~/.julia/packages/MixedModels/ACdLy/src/Xymat.jl:41 Test Summary: | Pass Total Time bootstrap | 52 52 1m49.4s Test Summary: | Pass Total Time show and summary | 7 7 8.3s Test Summary: | Pass Total Time markdown | 10 10 6.2s Test Summary: | Pass Total Time html | 3 3 0.2s Test Summary: | Pass Total Time latex | 7 7 0.3s Test Summary: | Pass Total Time opt limits | 6 6 0.8s Test Summary: | Pass Total Time simulate[!](::AbstractVector) | 11 11 16.1s Test Summary: | Pass Total Time predict | 52 52 48.9s Test Summary: | Pass Total Time fixed sigma | 8 8 2.4s Test Summary: | Pass Total Time PRIMA | 25 25 34.5s Test Summary: | Pass Total Time ForwardDiff | 6 6 44.7s Test Summary: | Pass Total Time FiniteDiff | 5 5 1.4s Testing MixedModels tests passed Testing completed after 1152.58s PkgEval succeeded after 1777.2s