Package evaluation to test StateSpaceReconstruction on Julia 1.10.10 (c8be17dcfd*) started at 2026-02-03T02:48:33.873 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.10` Set-up completed after 5.22s ################################################################################ # Installation # Installing StateSpaceReconstruction... Resolving package versions... Installed PyCall ─ v1.96.4 Installed Conda ── v1.10.3 Updating `~/.julia/environments/v1.10/Project.toml` [1441a9f6] + StateSpaceReconstruction v0.4.2 Updating `~/.julia/environments/v1.10/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 ⌅ [4fba245c] + ArrayInterface v3.1.32 [30b0a656] + ArrayInterfaceCore v0.1.29 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 ⌅ [2a0fbf3d] + CPUSummary v0.1.30 [49dc2e85] + Calculus v0.5.2 ⌅ [b1f25513] + CausalityToolsBase v0.3.5 [d360d2e6] + ChainRulesCore v1.26.0 ⌅ [608a59af] + ChaosTools v1.34.0 ⌃ [fb6a15b2] + CloseOpenIntervals v0.1.3 [861a8166] + Combinatorics v1.1.0 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [8f4d0f93] + Conda v1.10.3 ⌃ [187b0558] + ConstructionBase v1.4.1 [adafc99b] + CpuId v0.3.1 ⌅ [717857b8] + DSP v0.7.10 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 ⌅ [5732040d] + DelayEmbeddings v1.20.9 ⌃ [2b5f629d] + DiffEqBase v6.70.0 [163ba53b] + DiffResults v1.1.0 ⌃ [b552c78f] + DiffRules v1.14.0 ⌅ [b4f34e82] + Distances v0.9.2 ⌅ [31c24e10] + Distributions v0.23.12 ⌅ [ffbed154] + DocStringExtensions v0.8.6 ⌅ [6e36e845] + DynamicalSystemsBase v1.8.12 ⌅ [ed8fcbec] + Entropies v0.12.1 [4e289a0a] + EnumX v1.0.6 [e2ba6199] + ExprTools v0.1.10 [7a1cc6ca] + FFTW v1.10.0 ⌅ [7034ab61] + FastBroadcast v0.1.16 ⌅ [1a297f60] + FillArrays v0.9.7 ⌃ [6a86dc24] + FiniteDiff v2.13.1 ⌅ [f6369f11] + ForwardDiff v0.10.39 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [3e5b6fbb] + HostCPUFeatures v0.1.18 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.4.0 ⌃ [2ee39098] + LabelledArrays v1.9.0 ⌃ [10f19ff3] + LayoutPointers v0.1.8 [2ab3a3ac] + LogExpFunctions v0.3.29 [fc60dff9] + LombScargle v1.0.3 ⌃ [bdcacae8] + LoopVectorization v0.12.99 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 ⌃ [eff96d63] + Measurements v2.11.0 [e1d29d7a] + Missings v1.2.0 [46d2c3a1] + MuladdMacro v0.2.4 [77ba4419] + NaNMath v1.1.3 ⌃ [b8a86587] + NearestNeighbors v0.4.20 [645ca80c] + Neighborhood v0.2.4 ⌅ [8913a72c] + NonlinearSolve v0.3.22 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 ⌅ [90014a1f] + PDMats v0.10.1 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 ⌅ [f517fe37] + Polyester v0.6.4 ⌅ [1d0040c9] + PolyesterWeave v0.1.13 ⌃ [f27b6e38] + Polynomials v3.2.13 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [92933f4c] + ProgressMeter v1.11.0 [438e738f] + PyCall v1.96.4 [1fd47b50] + QuadGK v2.11.2 ⌅ [3cdcf5f2] + RecipesBase v0.8.0 ⌅ [731186ca] + RecursiveArrayTools v2.17.2 ⌅ [f2c3362d] + RecursiveFactorization v0.1.13 ⌅ [189a3867] + Reexport v0.2.0 [ae029012] + Requires v1.3.1 ⌅ [79098fc4] + Rmath v0.7.1 ⌅ [f2b01f46] + Roots v1.4.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.17 [3cdde19b] + SIMDDualNumbers v0.1.1 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 ⌅ [0bca4576] + SciMLBase v1.81.0 ⌅ [efcf1570] + Setfield v0.7.1 ⌃ [05bca326] + SimpleDiffEq v1.8.0 ⌅ [d5428e67] + Simplices v0.4.1 [66db9d55] + SnoopPrecompile v1.0.3 [a2af1166] + SortingAlgorithms v1.2.2 ⌅ [276daf66] + SpecialFunctions v0.10.3 [1441a9f6] + StateSpaceReconstruction v0.4.2 ⌅ [aedffcd0] + Static v0.3.3 ⌅ [90137ffa] + StaticArrays v0.12.6 [1e83bf80] + StaticArraysCore v1.4.4 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.21 ⌅ [4c63d2b9] + StatsFuns v0.9.7 ⌅ [7792a7ef] + StrideArraysCore v0.2.19 [ec057cc2] + StructUtils v2.6.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 ⌅ [8290d209] + ThreadingUtilities v0.4.7 [3a884ed6] + UnPack v1.0.2 ⌃ [3d5dd08c] + VectorizationBase v0.21.33 [81def892] + VersionParsing v1.3.0 ⌅ [29a6e085] + Wavelets v0.9.5 [700de1a5] + ZygoteRules v0.2.7 [f5851436] + FFTW_jll v3.3.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [f50d1b31] + Rmath_jll v0.4.3+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [4af54fe1] + LazyArtifacts [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.23+5 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log` Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Installation completed after 76.61s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 2953.9 ms ✓ Measurements 23138.8 ms ✓ Polynomials 3177.1 ms ✓ IterativeSolvers 4607.0 ms ✓ Roots 996.4 ms ✓ PolyesterWeave 1460.1 ms ✓ LayoutPointers 5036.5 ms ✓ RecursiveArrayTools 2343.0 ms ✓ LabelledArrays 1257.3 ms ✓ CloseOpenIntervals 3456.0 ms ✓ NearestNeighbors 1201.4 ms ✓ Conda 6496.1 ms ✓ Distributions 5337.1 ms ✓ ForwardDiff 1137.4 ms ✓ Measurements → MeasurementsSpecialFunctionsExt 1009.7 ms ✓ Measurements → MeasurementsRecipesBaseExt 634.6 ms ✓ StructUtils → StructUtilsMeasurementsExt 1480.5 ms ✓ Polynomials → PolynomialsChainRulesCoreExt 4868.7 ms ✓ DSP 12941.2 ms ✓ VectorizationBase 8503.8 ms ✓ SciMLBase 1807.5 ms ✓ StrideArraysCore 2102.1 ms ✓ Neighborhood 13770.5 ms ✓ PyCall 1768.3 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 3141.3 ms ✓ LombScargle 5880.3 ms ✓ Wavelets 2749.4 ms ✓ SLEEFPirates 1756.9 ms ✓ Polyester 10820.6 ms ✓ DelayEmbeddings 21460.3 ms ? Simplices 2210.2 ms ✓ SIMDDualNumbers 1754.0 ms ✓ FastBroadcast 15289.3 ms ✓ Entropies 30280.6 ms ✓ LoopVectorization 8467.6 ms ✓ RecursiveFactorization 84287.0 ms ✓ NonlinearSolve 27004.0 ms ✓ DiffEqBase 7568.4 ms ✓ SimpleDiffEq 59135.8 ms ✓ DynamicalSystemsBase 17431.6 ms ✓ ChaosTools 7908.3 ms ✓ CausalityToolsBase 7306.7 ms ? StateSpaceReconstruction 40 dependencies successfully precompiled in 430 seconds. 93 already precompiled. 2 dependencies failed but may be precompilable after restarting julia 7 dependencies had output during precompilation: ┌ DynamicalSystemsBase │ WARNING: method definition for similar at /home/pkgeval/.julia/packages/DiffEqBase/niZxn/src/data_array.jl:47 declares type variable T but does not use it. │ WARNING: method definition for EnsembleSolution_adjoint at /home/pkgeval/.julia/packages/DiffEqBase/niZxn/src/chainrules.jl:65 declares type variable T but does not use it. └ ┌ StateSpaceReconstruction │ WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/numpy.jl:231 overwritten in module Delaunay at /home/pkgeval/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ DelayEmbeddings │ WARNING: method definition for DelayEmbedding at /home/pkgeval/.julia/packages/DelayEmbeddings/DdOZb/src/embeddings.jl:59 declares type variable R but does not use it. │ WARNING: method definition for is_stochastic at /home/pkgeval/.julia/packages/DelayEmbeddings/DdOZb/src/traditional_de/automated.jl:171 declares type variable T but does not use it. │ WARNING: method definition for pecuzal_multivariate_embedding_cycle! at /home/pkgeval/.julia/packages/DelayEmbeddings/DdOZb/src/unified_de/pecuzal.jl:216 declares type variable D but does not use it. └ ┌ Wavelets │ WARNING: method definition for #computeWavelets#6 at /home/pkgeval/.julia/packages/Wavelets/ANOxi/src/mod/WT.jl:660 declares type variable S but does not use it. │ WARNING: method definition for #computeWavelets#7 at /home/pkgeval/.julia/packages/Wavelets/ANOxi/src/mod/WT.jl:664 declares type variable S but does not use it. │ WARNING: method definition for #computeWavelets#8 at /home/pkgeval/.julia/packages/Wavelets/ANOxi/src/mod/WT.jl:670 declares type variable S but does not use it. │ WARNING: method definition for cwt at /home/pkgeval/.julia/packages/Wavelets/ANOxi/src/mod/Transforms.jl:216 declares type variable U but does not use it. └ ┌ Simplices │ WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/numpy.jl:231 overwritten in module Delaunay at /home/pkgeval/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ DiffEqBase │ WARNING: method definition for similar at /home/pkgeval/.julia/packages/DiffEqBase/niZxn/src/data_array.jl:47 declares type variable T but does not use it. │ WARNING: method definition for EnsembleSolution_adjoint at /home/pkgeval/.julia/packages/DiffEqBase/niZxn/src/chainrules.jl:65 declares type variable T but does not use it. └ ┌ Entropies │ WARNING: method definition for #computeWavelets#6 at /home/pkgeval/.julia/packages/Wavelets/ANOxi/src/mod/WT.jl:660 declares type variable S but does not use it. │ WARNING: method definition for #computeWavelets#7 at /home/pkgeval/.julia/packages/Wavelets/ANOxi/src/mod/WT.jl:664 declares type variable S but does not use it. │ WARNING: method definition for #computeWavelets#8 at /home/pkgeval/.julia/packages/Wavelets/ANOxi/src/mod/WT.jl:670 declares type variable S but does not use it. │ WARNING: method definition for cwt at /home/pkgeval/.julia/packages/Wavelets/ANOxi/src/mod/Transforms.jl:216 declares type variable U but does not use it. └ Precompilation completed after 430.74s ################################################################################ # Testing # Testing StateSpaceReconstruction Status `/tmp/jl_6lN8QR/Project.toml` ⌅ [b1f25513] CausalityToolsBase v0.3.5 [8f4d0f93] Conda v1.10.3 ⌅ [5732040d] DelayEmbeddings v1.20.9 ⌅ [b4f34e82] Distances v0.9.2 ⌅ [31c24e10] Distributions v0.23.12 ⌃ [b8a86587] NearestNeighbors v0.4.20 [438e738f] PyCall v1.96.4 ⌅ [3cdcf5f2] RecipesBase v0.8.0 ⌅ [189a3867] Reexport v0.2.0 ⌅ [d5428e67] Simplices v0.4.1 [1441a9f6] StateSpaceReconstruction v0.4.2 ⌅ [90137ffa] StaticArrays v0.12.6 [37e2e46d] LinearAlgebra [10745b16] Statistics v1.10.0 [8dfed614] Test Status `/tmp/jl_6lN8QR/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 ⌅ [4fba245c] ArrayInterface v3.1.32 [30b0a656] ArrayInterfaceCore v0.1.29 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 ⌅ [2a0fbf3d] CPUSummary v0.1.30 [49dc2e85] Calculus v0.5.2 ⌅ [b1f25513] CausalityToolsBase v0.3.5 [d360d2e6] ChainRulesCore v1.26.0 ⌅ [608a59af] ChaosTools v1.34.0 ⌃ [fb6a15b2] CloseOpenIntervals v0.1.3 [861a8166] Combinatorics v1.1.0 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [8f4d0f93] Conda v1.10.3 ⌃ [187b0558] ConstructionBase v1.4.1 [adafc99b] CpuId v0.3.1 ⌅ [717857b8] DSP v0.7.10 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 ⌅ [5732040d] DelayEmbeddings v1.20.9 ⌃ [2b5f629d] DiffEqBase v6.70.0 [163ba53b] DiffResults v1.1.0 ⌃ [b552c78f] DiffRules v1.14.0 ⌅ [b4f34e82] Distances v0.9.2 ⌅ [31c24e10] Distributions v0.23.12 ⌅ [ffbed154] DocStringExtensions v0.8.6 ⌅ [6e36e845] DynamicalSystemsBase v1.8.12 ⌅ [ed8fcbec] Entropies v0.12.1 [4e289a0a] EnumX v1.0.6 [e2ba6199] ExprTools v0.1.10 [7a1cc6ca] FFTW v1.10.0 ⌅ [7034ab61] FastBroadcast v0.1.16 ⌅ [1a297f60] FillArrays v0.9.7 ⌃ [6a86dc24] FiniteDiff v2.13.1 ⌅ [f6369f11] ForwardDiff v0.10.39 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [3e5b6fbb] HostCPUFeatures v0.1.18 [615f187c] IfElse v0.1.1 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 ⌃ [2ee39098] LabelledArrays v1.9.0 ⌃ [10f19ff3] LayoutPointers v0.1.8 [2ab3a3ac] LogExpFunctions v0.3.29 [fc60dff9] LombScargle v1.0.3 ⌃ [bdcacae8] LoopVectorization v0.12.99 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 ⌃ [eff96d63] Measurements v2.11.0 [e1d29d7a] Missings v1.2.0 [46d2c3a1] MuladdMacro v0.2.4 [77ba4419] NaNMath v1.1.3 ⌃ [b8a86587] NearestNeighbors v0.4.20 [645ca80c] Neighborhood v0.2.4 ⌅ [8913a72c] NonlinearSolve v0.3.22 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 ⌅ [90014a1f] PDMats v0.10.1 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 ⌅ [f517fe37] Polyester v0.6.4 ⌅ [1d0040c9] PolyesterWeave v0.1.13 ⌃ [f27b6e38] Polynomials v3.2.13 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.1 [92933f4c] ProgressMeter v1.11.0 [438e738f] PyCall v1.96.4 [1fd47b50] QuadGK v2.11.2 ⌅ [3cdcf5f2] RecipesBase v0.8.0 ⌅ [731186ca] RecursiveArrayTools v2.17.2 ⌅ [f2c3362d] RecursiveFactorization v0.1.13 ⌅ [189a3867] Reexport v0.2.0 [ae029012] Requires v1.3.1 ⌅ [79098fc4] Rmath v0.7.1 ⌅ [f2b01f46] Roots v1.4.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.17 [3cdde19b] SIMDDualNumbers v0.1.1 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.43 ⌅ [0bca4576] SciMLBase v1.81.0 ⌅ [efcf1570] Setfield v0.7.1 ⌃ [05bca326] SimpleDiffEq v1.8.0 ⌅ [d5428e67] Simplices v0.4.1 [66db9d55] SnoopPrecompile v1.0.3 [a2af1166] SortingAlgorithms v1.2.2 ⌅ [276daf66] SpecialFunctions v0.10.3 [1441a9f6] StateSpaceReconstruction v0.4.2 ⌅ [aedffcd0] Static v0.3.3 ⌅ [90137ffa] StaticArrays v0.12.6 [1e83bf80] StaticArraysCore v1.4.4 [82ae8749] StatsAPI v1.8.0 ⌅ [2913bbd2] StatsBase v0.33.21 ⌅ [4c63d2b9] StatsFuns v0.9.7 ⌅ [7792a7ef] StrideArraysCore v0.2.19 [ec057cc2] StructUtils v2.6.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 ⌅ [8290d209] ThreadingUtilities v0.4.7 [3a884ed6] UnPack v1.0.2 ⌃ [3d5dd08c] VectorizationBase v0.21.33 [81def892] VersionParsing v1.3.0 ⌅ [29a6e085] Wavelets v0.9.5 [700de1a5] ZygoteRules v0.2.7 [f5851436] FFTW_jll v3.3.11+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [856f044c] MKL_jll v2025.2.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 ⌅ [f50d1b31] Rmath_jll v0.4.3+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [8ba89e20] Distributed [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [9fa8497b] Future [b77e0a4c] InteractiveUtils [4af54fe1] LazyArtifacts [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.23+5 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log` Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` [ Info: Running `conda install -q -y scipy` in root environment Channels: - conda-forge Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64 added / updated specs: - scipy The following packages will be downloaded: package | build ---------------------------|----------------- scipy-1.17.0 | py312h54fa4ab_1 16.1 MB conda-forge ------------------------------------------------------------ Total: 16.1 MB The following NEW packages will be INSTALLED: scipy conda-forge/linux-64::scipy-1.17.0-py312h54fa4ab_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/numpy.jl:231 overwritten in module Delaunay at /home/pkgeval/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/numpy.jl:231 overwritten in module Delaunay at /home/pkgeval/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/numpy.jl:231 overwritten in module Delaunay at /home/pkgeval/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11. [ Info: Installing scipy.spatial via the Conda scipy package... [ Info: Running `conda install -q -y scipy` in root environment Channels: - conda-forge Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done # All requested packages already installed. ERROR: LoadError: InitError: PyError (PyImport_ImportModule The Python package scipy.spatial could not be imported by pyimport. Usually this means that you did not install scipy.spatial in the Python version being used by PyCall. PyCall is currently configured to use the Julia-specific Python distribution installed by the Conda.jl package. To install the scipy.spatial module, you can use `pyimport_conda("scipy.spatial", PKG)`, where PKG is the Anaconda package that contains the module scipy.spatial, or alternatively you can use the Conda package directly (via `using Conda` followed by `Conda.add` etcetera). Alternatively, if you want to use a different Python distribution on your system, such as a system-wide Python (as opposed to the Julia-specific Python), you can re-configure PyCall with that Python. As explained in the PyCall documentation, set ENV["PYTHON"] to the path/name of the python executable you want to use, run Pkg.build("PyCall"), and re-launch Julia. ) ImportError("/opt/julia/bin/../lib/julia/libstdc++.so.6: version `CXXABI_1.3.15' not found (required by /home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/_distance_pybind.cpython-312-x86_64-linux-gnu.so)") File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/__init__.py", line 117, in from ._geometric_slerp import geometric_slerp File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/_geometric_slerp.py", line 7, in from scipy.spatial.distance import euclidean File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/distance.py", line 117, in from . import _hausdorff, _distance_pybind, _distance_wrap Stacktrace: [1] pyimport(name::String) @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:558 [2] pyimport_conda(modulename::String, condapkg::String, channel::String) @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:722 [3] pyimport_conda @ ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:715 [inlined] [4] __init__() @ Simplices.Delaunay ~/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:17 [5] include(mod::Module, _path::String) @ Base ./Base.jl:495 [6] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2087 [7] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1885 [8] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [9] invoke_in_world @ ./essentials.jl:923 [inlined] [10] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1876 [11] macro expansion @ ./loading.jl:1863 [inlined] [12] macro expansion @ ./lock.jl:270 [inlined] [13] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1826 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:1819 [17] include(mod::Module, _path::String) @ Base ./Base.jl:495 [18] include(x::String) @ StateSpaceReconstruction ~/.julia/packages/StateSpaceReconstruction/jRCsP/src/StateSpaceReconstruction.jl:3 [19] top-level scope @ ~/.julia/packages/StateSpaceReconstruction/jRCsP/src/StateSpaceReconstruction.jl:11 [20] include(mod::Module, _path::String) @ Base ./Base.jl:495 [21] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2087 [22] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1885 [23] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [24] invoke_in_world @ ./essentials.jl:923 [inlined] [25] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1876 [26] macro expansion @ ./loading.jl:1863 [inlined] [27] macro expansion @ ./lock.jl:270 [inlined] [28] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1826 [29] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [30] invoke_in_world @ ./essentials.jl:923 [inlined] [31] require(into::Module, mod::Symbol) @ Base ./loading.jl:1819 [32] include(fname::String) @ Base.MainInclude ./client.jl:487 [33] top-level scope @ none:6 during initialization of module Delaunay in expression starting at /home/pkgeval/.julia/packages/Simplices/HqUrD/src/Simplices.jl:3 in expression starting at /home/pkgeval/.julia/packages/StateSpaceReconstruction/jRCsP/src/Embeddings/Embeddings.jl:2 in expression starting at /home/pkgeval/.julia/packages/StateSpaceReconstruction/jRCsP/src/StateSpaceReconstruction.jl:3 in expression starting at /home/pkgeval/.julia/packages/StateSpaceReconstruction/jRCsP/test/runtests.jl:6 caused by: PyError (PyImport_ImportModule The Python package scipy.spatial could not be imported by pyimport. Usually this means that you did not install scipy.spatial in the Python version being used by PyCall. PyCall is currently configured to use the Julia-specific Python distribution installed by the Conda.jl package. To install the scipy.spatial module, you can use `pyimport_conda("scipy.spatial", PKG)`, where PKG is the Anaconda package that contains the module scipy.spatial, or alternatively you can use the Conda package directly (via `using Conda` followed by `Conda.add` etcetera). Alternatively, if you want to use a different Python distribution on your system, such as a system-wide Python (as opposed to the Julia-specific Python), you can re-configure PyCall with that Python. As explained in the PyCall documentation, set ENV["PYTHON"] to the path/name of the python executable you want to use, run Pkg.build("PyCall"), and re-launch Julia. ) ImportError("/opt/julia/bin/../lib/julia/libstdc++.so.6: version `CXXABI_1.3.15' not found (required by /home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/_distance_pybind.cpython-312-x86_64-linux-gnu.so)") File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/__init__.py", line 117, in from ._geometric_slerp import geometric_slerp File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/_geometric_slerp.py", line 7, in from scipy.spatial.distance import euclidean File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/distance.py", line 117, in from . import _hausdorff, _distance_pybind, _distance_wrap Stacktrace: [1] pyimport(name::String) @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:558 [2] pyimport_conda(modulename::String, condapkg::String, channel::String) @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:716 [3] pyimport_conda @ ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:715 [inlined] [4] __init__() @ Simplices.Delaunay ~/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:17 [5] include(mod::Module, _path::String) @ Base ./Base.jl:495 [6] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2087 [7] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1885 [8] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [9] invoke_in_world @ ./essentials.jl:923 [inlined] [10] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1876 [11] macro expansion @ ./loading.jl:1863 [inlined] [12] macro expansion @ ./lock.jl:270 [inlined] [13] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1826 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:1819 [17] include(mod::Module, _path::String) @ Base ./Base.jl:495 [18] include(x::String) @ StateSpaceReconstruction ~/.julia/packages/StateSpaceReconstruction/jRCsP/src/StateSpaceReconstruction.jl:3 [19] top-level scope @ ~/.julia/packages/StateSpaceReconstruction/jRCsP/src/StateSpaceReconstruction.jl:11 [20] include(mod::Module, _path::String) @ Base ./Base.jl:495 [21] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2087 [22] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1885 [23] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [24] invoke_in_world @ ./essentials.jl:923 [inlined] [25] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1876 [26] macro expansion @ ./loading.jl:1863 [inlined] [27] macro expansion @ ./lock.jl:270 [inlined] [28] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1826 [29] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [30] invoke_in_world @ ./essentials.jl:923 [inlined] [31] require(into::Module, mod::Symbol) @ Base ./loading.jl:1819 [32] include(fname::String) @ Base.MainInclude ./client.jl:487 [33] top-level scope @ none:6 Testing failed after 103.24s ERROR: LoadError: Package StateSpaceReconstruction errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 638.62s: illegal method overwrites during precompilation