Package evaluation to test RCall on Julia 1.10.10 (c8be17dcfd*) started at 2026-02-02T20:54:20.238 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.10` Set-up completed after 4.92s ################################################################################ # Installation # Installing RCall... Resolving package versions... Installed Conda ─ v1.10.3 Installed RCall ─ v0.14.12 Updating `~/.julia/environments/v1.10/Project.toml` [6f49c342] + RCall v0.14.12 Updating `~/.julia/environments/v1.10/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [324d7699] + CategoricalArrays v1.0.2 [34da2185] + Compat v4.18.1 [8f4d0f93] + Conda v1.10.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [ffbed154] + DocStringExtensions v0.9.5 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.4.0 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [43287f4e] + PtrArrays v1.3.0 [6f49c342] + RCall v0.14.12 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [91c51154] + SentinelArrays v1.4.9 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.8 [892a3eda] + StringManipulation v0.4.2 [ec057cc2] + StructUtils v2.6.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [81def892] + VersionParsing v1.3.0 [1b915085] + WinReg v1.0.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [b27032c2] + LibCURL v0.6.4 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.23+5 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log` Building RCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0ea46f30de5b17d7bd8eaaadb431b0a9ae494a48/build.log` Installation completed after 94.19s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/h9a3r/src/julia-1.9/activate_set.jl:63 Precompiling package dependencies... Precompiling packages... 38650.4 ms ✓ RCall → RCallAxisArraysExt 12768.7 ms ✓ IJulia 2 dependencies successfully precompiled in 55 seconds. 85 already precompiled. Precompilation completed after 71.03s ################################################################################ # Testing # Testing RCall ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1829 Status `/tmp/jl_BQ61My/Project.toml` [39de3d68] AxisArrays v0.4.8 [324d7699] CategoricalArrays v1.0.2 [8f4d0f93] Conda v1.10.3 [992eb4ea] CondaPkg v0.2.33 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [7073ff75] IJulia v1.34.1 [21216c6a] Preferences v1.5.1 [6f49c342] RCall v0.14.12 [3eaba693] StatsModels v0.7.8 [98d24dd4] TestSetExtensions v3.0.0 [44d3d7a6] Weave v0.10.12 [1b915085] WinReg v1.0.0 [ade2ca70] Dates [8f399da3] Libdl [56ddb016] Logging [44cfe95a] Pkg v1.10.0 [3fa0cd96] REPL [9a3f8284] Random [8dfed614] Test Status `/tmp/jl_BQ61My/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [39de3d68] AxisArrays v0.4.8 [324d7699] CategoricalArrays v1.0.2 [34da2185] Compat v4.18.1 [8f4d0f93] Conda v1.10.3 [992eb4ea] CondaPkg v0.2.33 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [ab62b9b5] DeepDiffs v1.2.0 [ffbed154] DocStringExtensions v0.9.5 ⌅ [eafb193a] Highlights v0.5.3 [34004b35] HypergeometricFunctions v0.3.28 [7073ff75] IJulia v1.34.1 [842dd82b] InlineStrings v1.4.5 [8197267c] IntervalSets v0.7.13 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [0b3b1443] MicroMamba v0.1.14 [e1d29d7a] Missings v1.2.0 [ffc61752] Mustache v1.0.21 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [2dfb63ee] PooledArrays v1.4.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [43287f4e] PtrArrays v1.3.0 [6f49c342] RCall v0.14.12 [b3c3ace0] RangeArrays v0.3.2 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.8 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.2 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [98d24dd4] TestSetExtensions v3.0.0 [81def892] VersionParsing v1.3.0 [44d3d7a6] Weave v0.10.12 [1b915085] WinReg v1.0.0 [ddb6d928] YAML v0.4.16 [c2297ded] ZMQ v1.5.1 [94ce4f54] Libiconv_jll v1.18.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [8f1865be] ZeroMQ_jll v4.3.6+0 [a9144af2] libsodium_jll v1.0.21+0 ⌅ [f8abcde7] micromamba_jll v1.5.12+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [8ba89e20] Distributed [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [9fa8497b] Future [b77e0a4c] InteractiveUtils [4af54fe1] LazyArtifacts [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.23+5 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ..... Test Summary: | Pass Total Time installation | 5 5 11.1s ┌ Warning: RCall.jl: Warning: Your system is mis-configured: ‘/var/db/timezone/localtime’ is not a symlink │ Warning: ‘/var/db/timezone/localtime’ is not identical to any known timezone file └ @ RCall ~/.julia/packages/RCall/FKyW5/src/io.jl:166 ┌ Info: RObject{VecSxp} │ R version 4.5.2 (2025-10-31) │ Platform: x86_64-conda-linux-gnu │ Running under: Debian GNU/Linux 12 (bookworm) │ │ Matrix products: default │ BLAS/LAPACK: /home/pkgeval/.julia/conda/3/x86_64/lib/libopenblasp-r0.3.30.so; LAPACK version 3.12.0 │ │ locale: │ [1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C │ [3] LC_TIME=C.UTF-8 LC_COLLATE=C.UTF-8 │ [5] LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8 │ [7] LC_PAPER=C.UTF-8 LC_NAME=C.UTF-8 │ [9] LC_ADDRESS=C.UTF-8 LC_TELEPHONE=C.UTF-8 │ [11] LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C.UTF-8 │ │ time zone: NA │ tzcode source: system (glibc) │ │ attached base packages: │ [1] stats graphics grDevices utils datasets methods base │ │ loaded via a namespace (and not attached): └ [1] compiler_4.5.2 ┌ Info: RObject{VecSxp} │ $MBCS │ [1] TRUE │ │ $`UTF-8` │ [1] TRUE │ │ $`Latin-1` │ [1] FALSE │ │ $codeset │ [1] "UTF-8" └ ┌ Info: └ RCall.conda_provided_r = true Test Summary: | Pass Total Time System configuration | 1 1 6.3s .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................┌ Warning: RCall.jl: Loading required package: MASS │ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : │ there is no package called ‘MASS’ └ @ RCall ~/.julia/packages/RCall/FKyW5/src/io.jl:166 ┌ Info: └ has_mass_package = false ┌ Warning: RCall.jl: Loading required package: ape │ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : │ there is no package called ‘ape’ └ @ RCall ~/.julia/packages/RCall/FKyW5/src/io.jl:166 [ Info: installing ape to temporary lib sh: 1: wget: not found sh: 1: wget: not found sh: 1: wget: not found ┌ Warning: RCall.jl: Warning: unable to access index for repository https://cloud.r-project.org/src/contrib: │ 'wget' call had nonzero exit status │ Warning: package ‘ape’ is not available for this version of R │ │ A version of this package for your version of R might be available elsewhere, │ see the ideas at │ https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages └ @ RCall ~/.julia/packages/RCall/FKyW5/src/io.jl:166 ===================================================== Namespaces: Error During Test at /home/pkgeval/.julia/packages/RCall/FKyW5/test/runtests.jl:26 Got exception outside of a @test LoadError: REvalError: Error in library("ape") : there is no package called ‘ape’ Stacktrace: [1] handle_eval_stderr(; as_warning::Bool) @ RCall ~/.julia/packages/RCall/FKyW5/src/io.jl:168 [2] reval_p(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}) @ RCall ~/.julia/packages/RCall/FKyW5/src/eval.jl:111 [3] reval_p(expr::Ptr{RCall.ExprSxp}, env::Ptr{EnvSxp}) @ RCall ~/.julia/packages/RCall/FKyW5/src/eval.jl:127 [4] reval(str::String, env::RObject{EnvSxp}) @ RCall ~/.julia/packages/RCall/FKyW5/src/eval.jl:145 [5] reval(str::String) @ RCall ~/.julia/packages/RCall/FKyW5/src/eval.jl:145 [6] top-level scope @ ~/.julia/packages/RCall/FKyW5/test/namespaces.jl:33 [7] include(fname::String) @ Base.MainInclude ./client.jl:487 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1582 [inlined] [9] macro expansion @ ~/.julia/packages/RCall/FKyW5/test/runtests.jl:26 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1582 [inlined] [11] top-level scope @ ~/.julia/packages/RCall/FKyW5/test/runtests.jl:10 [12] include(fname::String) @ Base.MainInclude ./client.jl:487 [13] top-level scope @ none:6 in expression starting at /home/pkgeval/.julia/packages/RCall/FKyW5/test/namespaces.jl:5 ===================================================== ......................[ Info: Installing 'julia 1.10' kernelspec in /home/pkgeval/.local/share/jupyter/kernels/julia-1.10 [ Info: Running `conda install -q -y jupyter` in root environment Channels: - r - conda-forge Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64 added / updated specs: - jupyter The following packages will be downloaded: package | build ---------------------------|----------------- _python_abi3_support-1.0 | hd8ed1ab_2 8 KB conda-forge anyio-4.12.1 | pyhcf101f3_0 142 KB conda-forge argon2-cffi-25.1.0 | pyhd8ed1ab_0 18 KB conda-forge argon2-cffi-bindings-25.1.0| py312h4c3975b_2 35 KB conda-forge arrow-1.4.0 | pyhcf101f3_0 111 KB conda-forge asttokens-3.0.1 | pyhd8ed1ab_0 28 KB conda-forge async-lru-2.1.0 | pyhcf101f3_0 19 KB conda-forge attrs-25.4.0 | pyhcf101f3_1 63 KB conda-forge babel-2.17.0 | pyhd8ed1ab_0 6.6 MB conda-forge beautifulsoup4-4.14.3 | pyha770c72_0 88 KB conda-forge bleach-6.3.0 | pyhcf101f3_0 139 KB conda-forge bleach-with-css-6.3.0 | h5f6438b_0 4 KB conda-forge cached-property-1.5.2 | hd8ed1ab_1 4 KB conda-forge cached_property-1.5.2 | pyha770c72_1 11 KB conda-forge comm-0.2.3 | pyhe01879c_0 14 KB conda-forge cpython-3.12.12 | py312hd8ed1ab_2 46 KB conda-forge debugpy-1.8.20 | py312h8285ef7_0 2.7 MB conda-forge decorator-5.2.1 | pyhd8ed1ab_0 14 KB conda-forge defusedxml-0.7.1 | pyhd8ed1ab_0 23 KB conda-forge exceptiongroup-1.3.1 | pyhd8ed1ab_0 21 KB conda-forge executing-2.2.1 | pyhd8ed1ab_0 30 KB conda-forge fqdn-1.5.1 | pyhd8ed1ab_1 16 KB conda-forge h11-0.16.0 | pyhcf101f3_1 38 KB conda-forge httpcore-1.0.9 | pyh29332c3_0 48 KB conda-forge httpx-0.28.1 | pyhd8ed1ab_0 62 KB conda-forge importlib-metadata-8.7.0 | pyhe01879c_1 34 KB conda-forge importlib_resources-6.5.2 | pyhd8ed1ab_0 33 KB conda-forge ipykernel-7.1.0 | pyha191276_0 131 KB conda-forge ipython-9.10.0 | pyh53cf698_0 632 KB conda-forge ipython_pygments_lexers-1.1.1| pyhd8ed1ab_0 14 KB conda-forge ipywidgets-8.1.8 | pyhd8ed1ab_0 112 KB conda-forge isoduration-20.11.0 | pyhd8ed1ab_1 19 KB conda-forge jedi-0.19.2 | pyhd8ed1ab_1 824 KB conda-forge jinja2-3.1.6 | pyhcf101f3_1 118 KB conda-forge json5-0.13.0 | pyhd8ed1ab_0 33 KB conda-forge jsonschema-4.26.0 | pyhcf101f3_0 80 KB conda-forge jsonschema-specifications-2025.9.1| pyhcf101f3_0 19 KB conda-forge jsonschema-with-format-nongpl-4.26.0| hcf101f3_0 5 KB conda-forge jupyter-1.1.1 | pyhd8ed1ab_1 9 KB conda-forge jupyter-lsp-2.3.0 | pyhcf101f3_0 59 KB conda-forge jupyter_client-8.8.0 | pyhcf101f3_0 110 KB conda-forge jupyter_console-6.6.3 | pyhd8ed1ab_1 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pyhd8ed1ab_1 16 KB conda-forge overrides-7.7.0 | pyhd8ed1ab_1 29 KB conda-forge pandocfilters-1.5.0 | pyhd8ed1ab_0 11 KB conda-forge parso-0.8.5 | pyhcf101f3_0 80 KB conda-forge pexpect-4.9.0 | pyhd8ed1ab_1 52 KB conda-forge prometheus_client-0.24.1 | pyhd8ed1ab_0 55 KB conda-forge prompt-toolkit-3.0.52 | pyha770c72_0 268 KB conda-forge prompt_toolkit-3.0.52 | hd8ed1ab_0 7 KB conda-forge psutil-7.2.2 | py312h5253ce2_0 220 KB conda-forge ptyprocess-0.7.0 | pyhd8ed1ab_1 19 KB conda-forge pure_eval-0.2.3 | pyhd8ed1ab_1 16 KB conda-forge pygments-2.19.2 | pyhd8ed1ab_0 868 KB conda-forge python-dateutil-2.9.0.post0| pyhe01879c_2 228 KB conda-forge python-fastjsonschema-2.21.2| pyhe01879c_0 239 KB conda-forge python-gil-3.12.12 | hd8ed1ab_2 46 KB conda-forge python-json-logger-2.0.7 | pyhd8ed1ab_0 13 KB conda-forge python-tzdata-2025.3 | pyhd8ed1ab_0 140 KB conda-forge pytz-2025.2 | pyhd8ed1ab_0 185 KB conda-forge pyyaml-6.0.3 | py312h8a5da7c_0 200 KB conda-forge pyzmq-27.1.0 | py312hfb55c3c_0 207 KB conda-forge referencing-0.37.0 | pyhcf101f3_0 51 KB conda-forge rfc3339-validator-0.1.4 | pyhd8ed1ab_1 10 KB conda-forge rfc3986-validator-0.1.1 | pyh9f0ad1d_0 8 KB conda-forge rfc3987-syntax-1.1.0 | pyhe01879c_1 22 KB conda-forge rpds-py-0.30.0 | py312h868fb18_0 375 KB conda-forge send2trash-2.1.0 | pyha191276_0 23 KB conda-forge six-1.17.0 | pyhe01879c_1 18 KB conda-forge sniffio-1.3.1 | pyhd8ed1ab_2 15 KB conda-forge soupsieve-2.8.3 | pyhd8ed1ab_0 37 KB conda-forge stack_data-0.6.3 | pyhd8ed1ab_1 26 KB conda-forge terminado-0.18.1 | pyhc90fa1f_1 24 KB conda-forge tinycss2-1.5.1 | pyhcf101f3_0 30 KB conda-forge tomli-2.4.0 | pyhcf101f3_0 21 KB conda-forge tornado-6.5.4 | py312h961da02_0 831 KB conda-forge traitlets-5.14.3 | pyhd8ed1ab_1 107 KB conda-forge typing-extensions-4.15.0 | h396c80c_0 89 KB conda-forge typing_extensions-4.15.0 | pyhcf101f3_0 50 KB conda-forge typing_utils-0.1.0 | pyhd8ed1ab_1 15 KB conda-forge uri-template-1.3.0 | pyhd8ed1ab_1 23 KB conda-forge wcwidth-0.5.3 | pyhd8ed1ab_0 69 KB conda-forge webcolors-25.10.0 | pyhd8ed1ab_0 19 KB conda-forge webencodings-0.5.1 | pyhd8ed1ab_3 15 KB conda-forge websocket-client-1.9.0 | pyhd8ed1ab_0 60 KB conda-forge widgetsnbextension-4.0.15 | pyhd8ed1ab_0 868 KB conda-forge yaml-0.2.5 | h280c20c_3 83 KB conda-forge zeromq-4.3.5 | h387f397_9 303 KB conda-forge zipp-3.23.0 | pyhcf101f3_1 24 KB conda-forge ------------------------------------------------------------ Total: 37.7 MB The following NEW packages will be INSTALLED: _python_abi3_supp~ conda-forge/noarch::_python_abi3_support-1.0-hd8ed1ab_2 anyio conda-forge/noarch::anyio-4.12.1-pyhcf101f3_0 argon2-cffi conda-forge/noarch::argon2-cffi-25.1.0-pyhd8ed1ab_0 argon2-cffi-bindi~ conda-forge/linux-64::argon2-cffi-bindings-25.1.0-py312h4c3975b_2 arrow conda-forge/noarch::arrow-1.4.0-pyhcf101f3_0 asttokens conda-forge/noarch::asttokens-3.0.1-pyhd8ed1ab_0 async-lru conda-forge/noarch::async-lru-2.1.0-pyhcf101f3_0 attrs conda-forge/noarch::attrs-25.4.0-pyhcf101f3_1 babel conda-forge/noarch::babel-2.17.0-pyhd8ed1ab_0 beautifulsoup4 conda-forge/noarch::beautifulsoup4-4.14.3-pyha770c72_0 bleach conda-forge/noarch::bleach-6.3.0-pyhcf101f3_0 bleach-with-css conda-forge/noarch::bleach-with-css-6.3.0-h5f6438b_0 cached-property conda-forge/noarch::cached-property-1.5.2-hd8ed1ab_1 cached_property conda-forge/noarch::cached_property-1.5.2-pyha770c72_1 comm conda-forge/noarch::comm-0.2.3-pyhe01879c_0 cpython conda-forge/noarch::cpython-3.12.12-py312hd8ed1ab_2 debugpy conda-forge/linux-64::debugpy-1.8.20-py312h8285ef7_0 decorator conda-forge/noarch::decorator-5.2.1-pyhd8ed1ab_0 defusedxml conda-forge/noarch::defusedxml-0.7.1-pyhd8ed1ab_0 exceptiongroup conda-forge/noarch::exceptiongroup-1.3.1-pyhd8ed1ab_0 executing conda-forge/noarch::executing-2.2.1-pyhd8ed1ab_0 fqdn conda-forge/noarch::fqdn-1.5.1-pyhd8ed1ab_1 h11 conda-forge/noarch::h11-0.16.0-pyhcf101f3_1 httpcore conda-forge/noarch::httpcore-1.0.9-pyh29332c3_0 httpx conda-forge/noarch::httpx-0.28.1-pyhd8ed1ab_0 importlib-metadata conda-forge/noarch::importlib-metadata-8.7.0-pyhe01879c_1 importlib_resourc~ conda-forge/noarch::importlib_resources-6.5.2-pyhd8ed1ab_0 ipykernel conda-forge/noarch::ipykernel-7.1.0-pyha191276_0 ipython conda-forge/noarch::ipython-9.10.0-pyh53cf698_0 ipython_pygments_~ conda-forge/noarch::ipython_pygments_lexers-1.1.1-pyhd8ed1ab_0 ipywidgets conda-forge/noarch::ipywidgets-8.1.8-pyhd8ed1ab_0 isoduration conda-forge/noarch::isoduration-20.11.0-pyhd8ed1ab_1 jedi conda-forge/noarch::jedi-0.19.2-pyhd8ed1ab_1 jinja2 conda-forge/noarch::jinja2-3.1.6-pyhcf101f3_1 json5 conda-forge/noarch::json5-0.13.0-pyhd8ed1ab_0 jsonschema conda-forge/noarch::jsonschema-4.26.0-pyhcf101f3_0 jsonschema-specif~ conda-forge/noarch::jsonschema-specifications-2025.9.1-pyhcf101f3_0 jsonschema-with-f~ conda-forge/noarch::jsonschema-with-format-nongpl-4.26.0-hcf101f3_0 jupyter conda-forge/noarch::jupyter-1.1.1-pyhd8ed1ab_1 jupyter-lsp conda-forge/noarch::jupyter-lsp-2.3.0-pyhcf101f3_0 jupyter_client conda-forge/noarch::jupyter_client-8.8.0-pyhcf101f3_0 jupyter_console conda-forge/noarch::jupyter_console-6.6.3-pyhd8ed1ab_1 jupyter_core conda-forge/noarch::jupyter_core-5.9.1-pyhc90fa1f_0 jupyter_events conda-forge/noarch::jupyter_events-0.12.0-pyh29332c3_0 jupyter_server conda-forge/noarch::jupyter_server-2.17.0-pyhcf101f3_0 jupyter_server_te~ conda-forge/noarch::jupyter_server_terminals-0.5.4-pyhcf101f3_0 jupyterlab conda-forge/noarch::jupyterlab-4.5.3-pyhd8ed1ab_0 jupyterlab_pygmen~ conda-forge/noarch::jupyterlab_pygments-0.3.0-pyhd8ed1ab_2 jupyterlab_server conda-forge/noarch::jupyterlab_server-2.28.0-pyhcf101f3_0 jupyterlab_widgets conda-forge/noarch::jupyterlab_widgets-3.0.16-pyhcf101f3_1 lark conda-forge/noarch::lark-1.3.1-pyhd8ed1ab_0 libsodium conda-forge/linux-64::libsodium-1.0.20-h4ab18f5_0 markupsafe conda-forge/linux-64::markupsafe-3.0.3-py312h8a5da7c_0 matplotlib-inline conda-forge/noarch::matplotlib-inline-0.2.1-pyhd8ed1ab_0 mistune conda-forge/noarch::mistune-3.2.0-pyhcf101f3_0 nbclient conda-forge/noarch::nbclient-0.10.4-pyhd8ed1ab_0 nbconvert-core conda-forge/noarch::nbconvert-core-7.17.0-pyhcf101f3_0 nbformat conda-forge/noarch::nbformat-5.10.4-pyhd8ed1ab_1 nest-asyncio conda-forge/noarch::nest-asyncio-1.6.0-pyhd8ed1ab_1 notebook conda-forge/noarch::notebook-7.5.3-pyhcf101f3_0 notebook-shim conda-forge/noarch::notebook-shim-0.2.4-pyhd8ed1ab_1 overrides conda-forge/noarch::overrides-7.7.0-pyhd8ed1ab_1 pandocfilters conda-forge/noarch::pandocfilters-1.5.0-pyhd8ed1ab_0 parso conda-forge/noarch::parso-0.8.5-pyhcf101f3_0 pexpect conda-forge/noarch::pexpect-4.9.0-pyhd8ed1ab_1 prometheus_client conda-forge/noarch::prometheus_client-0.24.1-pyhd8ed1ab_0 prompt-toolkit conda-forge/noarch::prompt-toolkit-3.0.52-pyha770c72_0 prompt_toolkit conda-forge/noarch::prompt_toolkit-3.0.52-hd8ed1ab_0 psutil conda-forge/linux-64::psutil-7.2.2-py312h5253ce2_0 ptyprocess conda-forge/noarch::ptyprocess-0.7.0-pyhd8ed1ab_1 pure_eval conda-forge/noarch::pure_eval-0.2.3-pyhd8ed1ab_1 pygments conda-forge/noarch::pygments-2.19.2-pyhd8ed1ab_0 python-dateutil conda-forge/noarch::python-dateutil-2.9.0.post0-pyhe01879c_2 python-fastjsonsc~ conda-forge/noarch::python-fastjsonschema-2.21.2-pyhe01879c_0 python-gil conda-forge/noarch::python-gil-3.12.12-hd8ed1ab_2 python-json-logger conda-forge/noarch::python-json-logger-2.0.7-pyhd8ed1ab_0 python-tzdata conda-forge/noarch::python-tzdata-2025.3-pyhd8ed1ab_0 pytz conda-forge/noarch::pytz-2025.2-pyhd8ed1ab_0 pyyaml conda-forge/linux-64::pyyaml-6.0.3-py312h8a5da7c_0 pyzmq conda-forge/linux-64::pyzmq-27.1.0-py312hfb55c3c_0 referencing conda-forge/noarch::referencing-0.37.0-pyhcf101f3_0 rfc3339-validator conda-forge/noarch::rfc3339-validator-0.1.4-pyhd8ed1ab_1 rfc3986-validator conda-forge/noarch::rfc3986-validator-0.1.1-pyh9f0ad1d_0 rfc3987-syntax conda-forge/noarch::rfc3987-syntax-1.1.0-pyhe01879c_1 rpds-py conda-forge/linux-64::rpds-py-0.30.0-py312h868fb18_0 send2trash conda-forge/noarch::send2trash-2.1.0-pyha191276_0 six conda-forge/noarch::six-1.17.0-pyhe01879c_1 sniffio conda-forge/noarch::sniffio-1.3.1-pyhd8ed1ab_2 soupsieve conda-forge/noarch::soupsieve-2.8.3-pyhd8ed1ab_0 stack_data conda-forge/noarch::stack_data-0.6.3-pyhd8ed1ab_1 terminado conda-forge/noarch::terminado-0.18.1-pyhc90fa1f_1 tinycss2 conda-forge/noarch::tinycss2-1.5.1-pyhcf101f3_0 tomli conda-forge/noarch::tomli-2.4.0-pyhcf101f3_0 tornado conda-forge/linux-64::tornado-6.5.4-py312h961da02_0 traitlets conda-forge/noarch::traitlets-5.14.3-pyhd8ed1ab_1 typing-extensions conda-forge/noarch::typing-extensions-4.15.0-h396c80c_0 typing_extensions conda-forge/noarch::typing_extensions-4.15.0-pyhcf101f3_0 typing_utils conda-forge/noarch::typing_utils-0.1.0-pyhd8ed1ab_1 uri-template conda-forge/noarch::uri-template-1.3.0-pyhd8ed1ab_1 wcwidth conda-forge/noarch::wcwidth-0.5.3-pyhd8ed1ab_0 webcolors conda-forge/noarch::webcolors-25.10.0-pyhd8ed1ab_0 webencodings conda-forge/noarch::webencodings-0.5.1-pyhd8ed1ab_3 websocket-client conda-forge/noarch::websocket-client-1.9.0-pyhd8ed1ab_0 widgetsnbextension conda-forge/noarch::widgetsnbextension-4.0.15-pyhd8ed1ab_0 yaml conda-forge/linux-64::yaml-0.2.5-h280c20c_3 zeromq conda-forge/linux-64::zeromq-4.3.5-h387f397_9 zipp conda-forge/noarch::zipp-3.23.0-pyhcf101f3_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [ Info: Running nbconvert ... [NbConvertApp] WARNING | pattern '' matched no files [NbConvertApp] Converting notebook /home/pkgeval/.julia/packages/RCall/FKyW5/test/ijulia.ipynb to notebook  Updating `~/.julia/packages/RCall/FKyW5/Project.toml` [324d7699] + CategoricalArrays v1.0.2 [8f4d0f93] + Conda v1.10.3 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [21216c6a] + Preferences v1.5.1 [3eaba693] + StatsModels v0.7.8 [1b915085] + WinReg v1.0.0  Updating `~/.julia/packages/RCall/FKyW5/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [324d7699] + CategoricalArrays v1.0.2 [34da2185] + Compat v4.18.1 [8f4d0f93] + Conda v1.10.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [ffbed154] + DocStringExtensions v0.9.5 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.4.0 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [43287f4e] + PtrArrays v1.3.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [91c51154] + SentinelArrays v1.4.9 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.8 [892a3eda] + StringManipulation v0.4.2 [ec057cc2] + StructUtils v2.6.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [81def892] + VersionParsing v1.3.0 [1b915085] + WinReg v1.0.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [b27032c2] + LibCURL v0.6.4 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.23+5 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1  Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` ERROR: KeyError: key StatsModels [3eaba693-59b7-5ba5-a881-562e759f1c8d] not found Stacktrace: [1] getindex  @ ./dict.jl:498 [inlined] [2] (::Pkg.API.Precompilation.var"#scan_deps!#45"{Pkg.API.Precompilation.var"#scan_pkg!#44"{Dict{Base.PkgId, Bool}}, Vector{Base.PkgId}, Dict{Base.PkgId, Bool}, Vector{Vector{Base.PkgId}}})(pkg::Base.PkgId, dmap::Dict{Base.PkgId, Vector{Base.PkgId}})  @ Pkg.API.Precompilation /opt/julia/share/julia/stdlib/v1.10/Pkg/src/precompilation.jl:545 [3] (::Pkg.API.Precompilation.var"#scan_pkg!#44"{Dict{Base.PkgId, Bool}})(pkg::Base.PkgId, dmap::Dict{Base.PkgId, Vector{Base.PkgId}})  @ Pkg.API.Precompilation /opt/julia/share/julia/stdlib/v1.10/Pkg/src/precompilation.jl:539 [4] (::Pkg.API.Precompilation.var"#scan_deps!#45"{Pkg.API.Precompilation.var"#scan_pkg!#44"{Dict{Base.PkgId, Bool}}, Vector{Base.PkgId}, Dict{Base.PkgId, Bool}, Vector{Vector{Base.PkgId}}})(pkg::Base.PkgId, dmap::Dict{Base.PkgId, Vector{Base.PkgId}})  @ Pkg.API.Precompilation /opt/julia/share/julia/stdlib/v1.10/Pkg/src/precompilation.jl:552 [5] (::Pkg.API.Precompilation.var"#scan_pkg!#44"{Dict{Base.PkgId, Bool}})(pkg::Base.PkgId, dmap::Dict{Base.PkgId, Vector{Base.PkgId}})  @ Pkg.API.Precompilation /opt/julia/share/julia/stdlib/v1.10/Pkg/src/precompilation.jl:539 [6] _precompilepkgs(pkgs::Vector{String}, internal_call::Bool, strict::Bool, warn_loaded::Bool, timing::Bool, _from_loading::Bool, io::IOContext{IO}, fancyprint::Bool, manifest::Bool)  @ Pkg.API.Precompilation /opt/julia/share/julia/stdlib/v1.10/Pkg/src/precompilation.jl:574 [7] #precompilepkgs#5  @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/precompilation.jl:332 [inlined] [8] (::Pkg.API.var"#225#226"{Bool, Bool, Bool, Bool, Bool, Vector{Pkg.Types.PackageSpec}})()  @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:1090 [9] activate(f::Pkg.API.var"#225#226"{Bool, Bool, Bool, Bool, Bool, Vector{Pkg.Types.PackageSpec}}, new_project::String)  @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:1315 [10] precompile(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; internal_call::Bool, strict::Bool, warn_loaded::Bool, already_instantiated::Bool, timing::Bool, _from_loading::Bool, kwargs::@Kwargs{io::IOContext{Base.PipeEndpoint}})  @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:1088 [11] precompile(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{Base.PipeEndpoint}, kwargs::@Kwargs{_from_loading::Bool})  @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [12] precompile  @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [13] #precompile#114  @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [14] #invokelatest#2  @ ./essentials.jl:894 [inlined] [15] invokelatest  @ ./essentials.jl:889 [inlined] [16] _require(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2036 [17] __require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:1885 [18] #invoke_in_world#3  @ ./essentials.jl:926 [inlined] [19] invoke_in_world  @ ./essentials.jl:923 [inlined] [20] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:1876 [21] macro expansion  @ ./loading.jl:1863 [inlined] [22] macro expansion  @ ./lock.jl:270 [inlined] [23] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:1826 [24] #invoke_in_world#3  @ ./essentials.jl:926 [inlined] [25] invoke_in_world  @ ./essentials.jl:923 [inlined] [26] require(into::Module, mod::Symbol)  @ Base ./loading.jl:1819 [NbConvertApp] ERROR | Error occurred while starting new kernel client for kernel 6d94f789-cab0-4cb1-bcb7-19eb8f5ef998: Kernel died before replying to kernel_info Traceback (most recent call last): File "/home/pkgeval/.julia/conda/3/x86_64/bin/jupyter-nbconvert", line 10, in sys.exit(main()) ^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/jupyter_core/application.py", line 284, in launch_instance super().launch_instance(argv=argv, **kwargs) File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/traitlets/config/application.py", line 1075, in launch_instance app.start() File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/nbconvertapp.py", line 420, in start self.convert_notebooks() File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/nbconvertapp.py", line 597, in convert_notebooks self.convert_single_notebook(notebook_filename) File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/nbconvertapp.py", line 563, in convert_single_notebook output, resources = self.export_single_notebook( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/nbconvertapp.py", line 487, in export_single_notebook output, resources = self.exporter.from_filename( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/exporters/exporter.py", line 201, in from_filename return self.from_file(f, resources=resources, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/exporters/exporter.py", line 220, in from_file return self.from_notebook_node( ^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/exporters/notebook.py", line 36, in from_notebook_node nb_copy, resources = super().from_notebook_node(nb, resources, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/exporters/exporter.py", line 154, in from_notebook_node nb_copy, resources = self._preprocess(nb_copy, resources) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/exporters/exporter.py", line 353, in _preprocess nbc, resc = preprocessor(nbc, resc) ^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/preprocessors/base.py", line 48, in __call__ return self.preprocess(nb, resources) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/preprocessors/execute.py", line 97, in preprocess with self.setup_kernel(): ^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/contextlib.py", line 137, in __enter__ return next(self.gen) ^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbclient/client.py", line 603, in setup_kernel self.start_new_kernel_client() File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/jupyter_core/utils/__init__.py", line 165, in wrapped return loop.run_until_complete(inner) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/asyncio/base_events.py", line 691, in run_until_complete return future.result() ^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbclient/client.py", line 566, in async_start_new_kernel_client await ensure_async(self.kc.wait_for_ready(timeout=self.startup_timeout)) File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/jupyter_core/utils/__init__.py", line 214, in ensure_async result = await obj ^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/jupyter_client/client.py", line 204, in _async_wait_for_ready raise RuntimeError(msg) RuntimeError: Kernel died before replying to kernel_info ===================================================== IJulia: Error During Test at /home/pkgeval/.julia/packages/RCall/FKyW5/test/runtests.jl:37 Got exception outside of a @test LoadError: failed process: Process(`/home/pkgeval/.julia/conda/3/x86_64/bin/jupyter nbconvert --ExecutePreprocessor.timeout=-1 --to notebook --execute /home/pkgeval/.julia/packages/RCall/FKyW5/test/ijulia.ipynb '' --output /home/pkgeval/.julia/packages/RCall/FKyW5/test/ijulia.ipynb`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:565 [inlined] [2] read(cmd::Cmd) @ Base ./process.jl:449 [3] read @ ./process.jl:458 [inlined] [4] notebook(source::String; out_path::String, timeout::Int64, nbconvert_options::String, jupyter_path::String) @ Weave ~/.julia/packages/Weave/f7Ly3/src/Weave.jl:296 [5] top-level scope @ ~/.julia/packages/RCall/FKyW5/test/ijulia.jl:14 [6] include(fname::String) @ Base.MainInclude ./client.jl:487 [7] macro expansion @ ~/.julia/packages/RCall/FKyW5/test/runtests.jl:42 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1582 [inlined] [9] macro expansion @ ~/.julia/packages/RCall/FKyW5/test/runtests.jl:41 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1582 [inlined] [11] top-level scope @ ~/.julia/packages/RCall/FKyW5/test/runtests.jl:10 [12] include(fname::String) @ Base.MainInclude ./client.jl:487 [13] top-level scope @ none:6 in expression starting at /home/pkgeval/.julia/packages/RCall/FKyW5/test/ijulia.jl:14 ===================================================== . Test Summary: | Pass Error Total Time RCall | 494 2 496 2m53.5s Basic | 64 64 13.5s Conversion | 390 390 32.0s Macros | 17 17 0.9s Namespaces | 1 1 4.9s REPL | 22 22 6.8s IJulia | 1 1 1m55.4s ERROR: LoadError: Some tests did not pass: 494 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/RCall/FKyW5/test/runtests.jl:9 Testing failed after 185.37s ERROR: LoadError: Package RCall errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 427.25s: package tests unexpectedly errored