Package evaluation to test OnlinePCA on Julia 1.10.10 (c8be17dcfd*) started at 2026-02-03T02:01:00.018 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.10` Set-up completed after 5.23s ################################################################################ # Installation # Installing OnlinePCA... Resolving package versions... Installed libaec_jll ────────────────── v1.1.5+0 Installed IrrationalConstants ───────── v0.2.6 Installed Crayons ───────────────────── v4.1.1 Installed MPICH_jll ─────────────────── v4.3.2+0 Installed ColorTypes ────────────────── v0.12.1 Installed WebSockets ────────────────── v1.6.0 Installed MatrixMarket ──────────────── v0.5.2 Installed XML2_jll ──────────────────── v2.13.9+0 Installed Kaleido_jll ───────────────── v0.2.1+0 Installed Rmath ─────────────────────── v0.9.0 Installed Xorg_libpciaccess_jll ─────── v0.18.1+0 Installed PlotlyKaleido ─────────────── v2.3.1 Installed PlotlyJS ──────────────────── v0.18.17 Installed HypergeometricFunctions ───── v0.3.28 Installed TensorCore ────────────────── v0.1.1 Installed Preferences ───────────────── v1.5.1 Installed StatsFuns ─────────────────── v1.5.2 Installed JSExpr ────────────────────── v0.5.4 Installed JSON ──────────────────────── v0.21.4 Installed PrettyTables ──────────────── v3.1.2 Installed Blink ─────────────────────── v0.12.9 Installed Zstd_jll ──────────────────── v1.5.7+1 Installed TableTraits ───────────────── v1.0.1 Installed OpenSSL_jll ───────────────── v3.5.5+0 Installed LoggingExtras ─────────────── v1.2.0 Installed Hwloc_jll ─────────────────── v2.12.2+0 Installed PtrArrays ─────────────────── v1.3.0 Installed BitFlags ──────────────────── v0.1.9 Installed Mustache ──────────────────── v1.0.21 Installed PlotlyBase ────────────────── v0.8.23 Installed SpecialFunctions ──────────── v2.6.1 Installed Parsers ───────────────────── v2.8.3 Installed FunctionalCollections ─────── v0.5.0 Installed SentinelArrays ────────────── v1.4.9 Installed Tables ────────────────────── v1.12.1 Installed SimpleBufferStream ────────── v1.2.0 Installed PDMats ────────────────────── v0.11.37 Installed FixedPointNumbers ─────────── v0.8.5 Installed DataAPI ───────────────────── v1.16.0 Installed MicrosoftMPI_jll ──────────── v10.1.4+3 Installed OpenMPI_jll ───────────────── v5.0.9+0 Installed PooledArrays ──────────────── v1.4.3 Installed ConcurrentUtilities ───────── v2.5.0 Installed JLLWrappers ───────────────── v1.7.1 Installed InlineStrings ─────────────── v1.4.5 Installed ProgressMeter ─────────────── v1.11.0 Installed Pidfile ───────────────────── v1.3.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Mux ───────────────────────── v1.0.2 Installed DataValueInterfaces ───────── v1.0.0 Installed ColorVectorSpace ──────────── v0.11.0 Installed PrecompileTools ───────────── v1.2.1 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed OrderedCollections ────────── v1.8.1 Installed URIs ──────────────────────── v1.6.1 Installed AssetRegistry ─────────────── v0.1.1 Installed WorkerUtilities ───────────── v1.6.1 Installed TranscodingStreams ────────── v0.11.3 Installed LaTeXStrings ──────────────── v1.4.0 Installed OpenSSL ───────────────────── v1.6.1 Installed HTTP ──────────────────────── v1.10.19 Installed InvertedIndices ───────────── v1.3.1 Installed DelimitedFiles ────────────── v1.9.1 Installed FilePathsBase ─────────────── v0.9.24 Installed MPIPreferences ────────────── v0.1.11 Installed HDF5 ──────────────────────── v0.17.2 Installed FillArrays ────────────────── v1.16.0 Installed QuadGK ────────────────────── v2.11.2 Installed MPItrampoline_jll ─────────── v5.5.4+0 Installed Reexport ──────────────────── v1.2.2 Installed MbedTLS ───────────────────── v1.1.9 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed WebIO ─────────────────────── v0.8.21 Installed CodecZstd ─────────────────── v0.8.7 Installed DataFrames ────────────────── v1.8.1 Installed GLM ───────────────────────── v1.9.2 Installed LogExpFunctions ───────────── v0.3.29 Installed StatsModels ───────────────── v0.7.8 Installed Hiccup ────────────────────── v0.2.2 Installed WeakRefStrings ────────────── v1.4.2 Installed DataStructures ────────────── v0.19.3 Installed Colors ────────────────────── v0.13.1 Installed Requires ──────────────────── v1.3.1 Installed Observables ───────────────── v0.5.5 Installed AliasTables ───────────────── v1.1.3 Installed ShiftedArrays ─────────────── v2.0.0 Installed MacroTools ────────────────── v0.5.16 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Compat ────────────────────── v4.18.1 Installed StatsAPI ──────────────────── v1.8.0 Installed UnPack ────────────────────── v1.0.2 Installed Distributions ─────────────── v0.25.123 Installed Parameters ────────────────── v0.12.3 Installed CodecZlib ─────────────────── v0.7.8 Installed Lazy ──────────────────────── v0.15.1 Installed ArgParse ──────────────────── v1.2.0 Installed StringManipulation ────────── v0.4.2 Installed HDF5_jll ──────────────────── v1.14.6+0 Installed SortingAlgorithms ─────────── v1.2.2 Installed StatsBase ─────────────────── v0.34.10 Installed Missings ──────────────────── v1.2.0 Installed CSV ───────────────────────── v0.10.15 Installed ExceptionUnwrapping ───────── v0.1.11 Installed Widgets ───────────────────── v0.6.7 Installed TextWrap ──────────────────── v1.0.2 Installed DocStringExtensions ───────── v0.9.5 Installed OnlinePCA ─────────────────── v0.3.10 Installed ColorSchemes ──────────────── v3.31.0 Updating `~/.julia/environments/v1.10/Project.toml` [975b03d1] + OnlinePCA v0.3.10 Updating `~/.julia/environments/v1.10/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [c7e460c6] + ArgParse v1.2.0 [bf4720bc] + AssetRegistry v0.1.1 [d1d4a3ce] + BitFlags v0.1.9 [ad839575] + Blink v0.12.9 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.7 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [53c48c17] + FixedPointNumbers v0.8.5 [de31a74c] + FunctionalCollections v0.5.0 [38e38edf] + GLM v1.9.2 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.19 [9fb69e20] + Hiccup v0.2.2 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [97c1335a] + JSExpr v0.5.4 ⌅ [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [4d4711f2] + MatrixMarket v0.5.2 [739be429] + MbedTLS v1.1.9 [e1d29d7a] + Missings v1.2.0 [ffc61752] + Mustache v1.0.21 [a975b10e] + Mux v1.0.2 [510215fc] + Observables v0.5.5 [975b03d1] + OnlinePCA v0.3.10 [4d8831e6] + OpenSSL v1.6.1 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [a03496cd] + PlotlyBase v0.8.23 [f0f68f2c] + PlotlyJS v0.18.17 [f2990250] + PlotlyKaleido v2.3.1 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [91c51154] + SentinelArrays v1.4.9 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.8 [892a3eda] + StringManipulation v0.4.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [b718987f] + TextWrap v1.0.2 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [0f1e0344] + WebIO v0.8.21 [104b5d7c] + WebSockets v1.6.0 [cc8bc4a8] + Widgets v0.6.7 [76eceee3] + WorkerUtilities v1.6.1 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [f7e6163d] + Kaleido_jll v0.2.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.9+0 [458c3c95] + OpenSSL_jll v3.5.5+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [477f73a3] + libaec_jll v1.1.5+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [4af54fe1] + LazyArtifacts [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.23+5 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building WebIO ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0eef0765186f7452e52236fa42ca8c9b3c11c6e3/build.log` Building PlotlyJS → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/287e092914da6c91f002aafcf82a2ec065bf94a3/build.log` Installation completed after 78.39s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 902.7 ms ✓ TestEnv 1 dependency successfully precompiled in 3 seconds Precompiling package dependencies... Precompiling packages... 1519.0 ms ✓ SentinelArrays 1388.9 ms ✓ MbedTLS 857.7 ms ✓ Compat 939.6 ms ✓ OrderedCollections 819.8 ms ✓ Observables 638.9 ms ✓ TextWrap 716.0 ms ✓ Requires 709.9 ms ✓ DelimitedFiles 587.2 ms ✓ UnPack 1563.5 ms ✓ FillArrays 549.1 ms ✓ DataValueInterfaces 641.7 ms ✓ LaTeXStrings 683.9 ms ✓ InvertedIndices 618.8 ms ✓ Reexport 833.9 ms ✓ DocStringExtensions 1042.6 ms ✓ InlineStrings 1639.4 ms ✓ IrrationalConstants 864.1 ms ✓ URIs 526.5 ms ✓ IteratorInterfaceExtensions 635.7 ms ✓ SimpleBufferStream 735.1 ms ✓ TensorCore 629.8 ms ✓ DataAPI 726.7 ms ✓ WorkerUtilities 688.9 ms ✓ StatsAPI 634.7 ms ✓ CompilerSupportLibraries_jll 1391.9 ms ✓ Crayons 632.7 ms ✓ BitFlags 1311.2 ms ✓ ProgressMeter 3197.7 ms ✓ MacroTools 890.8 ms ✓ FunctionalCollections 780.2 ms ✓ LoggingExtras 802.8 ms ✓ ExceptionUnwrapping 559.8 ms ✓ PtrArrays 1078.5 ms ✓ ConcurrentUtilities 907.3 ms ✓ TranscodingStreams 839.8 ms ✓ Preferences 620.4 ms ✓ ShiftedArrays 687.1 ms ✓ Pidfile 1069.9 ms ✓ SuiteSparse 1371.8 ms ✓ Statistics 633.5 ms ✓ Compat → CompatLinearAlgebraExt 2940.2 ms ✓ DataStructures 1163.9 ms ✓ ArgParse 710.9 ms ✓ Parameters 1283.2 ms ✓ FillArrays → FillArraysSparseArraysExt 1088.5 ms ✓ LogExpFunctions 564.8 ms ✓ TableTraits 724.5 ms ✓ Missings 913.3 ms ✓ PooledArrays 4059.4 ms ✓ Lazy 1098.1 ms ✓ Hiccup 732.3 ms ✓ AliasTables 752.7 ms ✓ CodecZlib 930.4 ms ✓ MPIPreferences 634.6 ms ✓ PrecompileTools 737.1 ms ✓ JLLWrappers 1554.8 ms ✓ PDMats 3695.5 ms ✓ FixedPointNumbers 1311.8 ms ✓ FilePathsBase 831.0 ms ✓ SortingAlgorithms 1538.1 ms ✓ QuadGK 1540.2 ms ✓ FillArrays → FillArraysStatisticsExt 1325.0 ms ✓ Tables 1116.6 ms ✓ MatrixMarket 13098.9 ms ✓ Parsers 2300.9 ms ✓ StringManipulation 923.7 ms ✓ OpenSSL_jll 864.8 ms ✓ Kaleido_jll 848.2 ms ✓ Rmath_jll 744.5 ms ✓ MicrosoftMPI_jll 860.2 ms ✓ Zstd_jll 842.9 ms ✓ Libiconv_jll 826.9 ms ✓ Xorg_libpciaccess_jll 835.0 ms ✓ libaec_jll 698.1 ms ✓ MPItrampoline_jll 846.0 ms ✓ OpenSpecFun_jll 1213.5 ms ✓ FillArrays → FillArraysPDMatsExt 2709.5 ms ✓ ColorTypes 614.7 ms ✓ FilePathsBase → FilePathsBaseMmapExt 3684.6 ms ✓ StatsBase 870.9 ms ✓ Mustache 2813.2 ms ✓ JSON 756.8 ms ✓ InlineStrings → ParsersExt 27204.4 ms ✓ PrettyTables 2637.6 ms ✓ OpenSSL 1090.5 ms ✓ Rmath 1325.1 ms ✓ CodecZstd 879.2 ms ✓ XML2_jll 3936.5 ms ✓ SpecialFunctions 6685.0 ms ✓ Colors 4044.7 ms ✓ ColorVectorSpace 1606.2 ms ✓ FilePathsBase → FilePathsBaseTestExt 1233.6 ms ✓ PDMats → StatsBaseExt 829.9 ms ✓ PlotlyKaleido 793.2 ms ✓ AssetRegistry 1390.5 ms ✓ WeakRefStrings 53608.7 ms ✓ DataFrames 16719.1 ms ✓ HTTP 872.3 ms ✓ Hwloc_jll 1556.6 ms ✓ HypergeometricFunctions 1532.7 ms ✓ Widgets 1477.4 ms ✓ ColorVectorSpace → SpecialFunctionsExt 6286.1 ms ✓ ColorSchemes 17782.9 ms ✓ CSV 2423.0 ms ✓ WebSockets 3213.5 ms ✓ Mux 724.9 ms ✓ OpenMPI_jll 893.7 ms ✓ MPICH_jll 2225.5 ms ✓ StatsFuns 5274.6 ms ✓ PlotlyBase 3481.2 ms ✓ WebIO 1274.3 ms ✓ HDF5_jll 2443.0 ms ✓ StatsModels 8082.8 ms ✓ Distributions 5805.2 ms ✓ PlotlyBase → DataFramesExt 3596.6 ms ✓ JSExpr 8296.7 ms ✓ HDF5 2614.2 ms ✓ Distributions → DistributionsTestExt 3087.0 ms ✓ GLM 2906.6 ms ✓ PlotlyBase → DistributionsExt 5489.7 ms ✓ Blink 9069.0 ms ✓ PlotlyJS 5723.9 ms ✓ PlotlyJS → CSVExt 8639.1 ms ✓ PlotlyJS → DataFramesExt 7547.1 ms ✓ OnlinePCA 125 dependencies successfully precompiled in 352 seconds. 7 already precompiled. Precompilation completed after 371.42s ################################################################################ # Testing # Testing OnlinePCA Status `/tmp/jl_xFeeNu/Project.toml` [c7e460c6] ArgParse v1.2.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 [1a297f60] FillArrays v1.16.0 [4d4711f2] MatrixMarket v0.5.2 [975b03d1] OnlinePCA v0.3.10 [37e2e46d] LinearAlgebra [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [8dfed614] Test Status `/tmp/jl_xFeeNu/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [c7e460c6] ArgParse v1.2.0 [bf4720bc] AssetRegistry v0.1.1 [d1d4a3ce] BitFlags v0.1.9 [ad839575] Blink v0.12.9 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [53c48c17] FixedPointNumbers v0.8.5 [de31a74c] FunctionalCollections v0.5.0 [38e38edf] GLM v1.9.2 [f67ccb44] HDF5 v0.17.2 [cd3eb016] HTTP v1.10.19 [9fb69e20] Hiccup v0.2.2 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [97c1335a] JSExpr v0.5.4 ⌅ [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [50d2b5c4] Lazy v0.15.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [4d4711f2] MatrixMarket v0.5.2 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [ffc61752] Mustache v1.0.21 [a975b10e] Mux v1.0.2 [510215fc] Observables v0.5.5 [975b03d1] OnlinePCA v0.3.10 [4d8831e6] OpenSSL v1.6.1 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [a03496cd] PlotlyBase v0.8.23 [f0f68f2c] PlotlyJS v0.18.17 [f2990250] PlotlyKaleido v2.3.1 [2dfb63ee] PooledArrays v1.4.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [91c51154] SentinelArrays v1.4.9 [1277b4bf] ShiftedArrays v2.0.0 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.8 [892a3eda] StringManipulation v0.4.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [b718987f] TextWrap v1.0.2 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [ea10d353] WeakRefStrings v1.4.2 [0f1e0344] WebIO v0.8.21 [104b5d7c] WebSockets v1.6.0 [cc8bc4a8] Widgets v0.6.7 [76eceee3] WorkerUtilities v1.6.1 ⌅ [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.2+0 [f7e6163d] Kaleido_jll v0.2.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.9+0 [458c3c95] OpenSSL_jll v3.5.5+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [3161d3a3] Zstd_jll v1.5.7+1 [477f73a3] libaec_jll v1.1.5+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [8ba89e20] Distributed [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [9fa8497b] Future [b77e0a4c] InteractiveUtils [4af54fe1] LazyArtifacts [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.23+5 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... /tmp/jl_RbSbNJ Running all tests... ####### Binarization of CSV (Julia API) ####### 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 ####### Binarization of CSV (Command line) ####### Parsed args: binfile => /tmp/jl_RbSbNJ/Data.zst csvfile => /tmp/jl_RbSbNJ/Data.csv 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 ####### Binarization of MM (Julia API) ####### ####### Binarization of MM (Command line) ####### Parsed args: mmfile => /tmp/jl_RbSbNJ/Data.mtx binfile => /tmp/jl_RbSbNJ/Data.mtx.zst ####### Binarization of Binary COO (Julia API) ####### ####### Binarization of Binary COO (Command line) ####### Parsed args: binfile => /tmp/jl_RbSbNJ/Data.bincoo.zst bincoofile => /tmp/jl_RbSbNJ/Data.bincoo ####### Summarization (Julia API) ####### 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Command line) ####### Parsed args: pseudocount => 1.0 binfile => /tmp/jl_RbSbNJ/Data.zst mode => dense outdir => /tmp/jl_sQxeSz 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Julia API) ####### 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### Summarization (Command line) ####### Parsed args: pseudocount => 1.0 binfile => /tmp/jl_RbSbNJ/Data.mtx.zst mode => sparse_mm outdir => /tmp/jl_SmU4Vu 1 / 2 : Column-wise statistics are calculated... 2 / 2 : Row-wise statistics are calculated... ####### HVG (Julia API) ####### Highly Variable Genes are calculated... ERROR: LoadError: step-halving failed at beta0 = [-1.0102040816324924, 1.0102040816325502] Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] _fit!(m::GLM.GeneralizedLinearModel{GLM.GlmResp{Vector{Float64}, Gamma{Float64}, GLM.IdentityLink}, GLM.DensePredChol{Float64, CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}}, verbose::Bool, maxiter::Int64, minstepfac::Float64, atol::Float64, rtol::Float64, start::Nothing) @ GLM ~/.julia/packages/GLM/IngN2/src/glmfit.jl:405 [3] #fit!#19 @ ~/.julia/packages/GLM/IngN2/src/glmfit.jl:462 [inlined] [4] fit! @ ~/.julia/packages/GLM/IngN2/src/glmfit.jl:429 [inlined] [5] fit(::Type{GLM.GeneralizedLinearModel}, X::Matrix{Float64}, y::Vector{Float64}, d::Gamma{Float64}, l::GLM.IdentityLink; dropcollinear::Bool, dofit::Bool, weights::StatsBase.FrequencyWeights{Float64, Float64, Vector{Float64}}, wts::Nothing, offset::Vector{Float64}, fitargs::@Kwargs{}) @ GLM ~/.julia/packages/GLM/IngN2/src/glmfit.jl:598 [6] fit(::Type{GLM.GeneralizedLinearModel}, X::Matrix{Float64}, y::Vector{Float64}, d::Gamma{Float64}, l::GLM.IdentityLink) @ GLM ~/.julia/packages/GLM/IngN2/src/glmfit.jl:567 [7] fit(::Type{GLM.GeneralizedLinearModel}, ::StatsModels.FormulaTerm{StatsModels.Term, StatsModels.Term}, ::DataFrames.DataFrame, ::Gamma{Float64}, ::Vararg{Any}; contrasts::Dict{Symbol, Any}, kwargs::@Kwargs{}) @ StatsModels ~/.julia/packages/StatsModels/1QB5l/src/statsmodel.jl:88 [8] fit @ ~/.julia/packages/StatsModels/1QB5l/src/statsmodel.jl:78 [inlined] [9] glm @ ~/.julia/packages/GLM/IngN2/src/glmfit.jl:618 [inlined] [10] hvg(; binfile::String, rowmeanlist::String, rowvarlist::String, rowcv2list::String, outdir::String) @ OnlinePCA ~/.julia/packages/OnlinePCA/AhPWT/src/hvg.jl:54 [11] top-level scope @ ~/.julia/packages/OnlinePCA/AhPWT/test/test_hvg.jl:3 [12] include(fname::String) @ Base.MainInclude ./client.jl:487 [13] top-level scope @ ~/.julia/packages/OnlinePCA/AhPWT/test/runtests.jl:65 [14] include(fname::String) @ Base.MainInclude ./client.jl:487 [15] top-level scope @ none:6 in expression starting at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/test/test_hvg.jl:3 in expression starting at /home/pkgeval/.julia/packages/OnlinePCA/AhPWT/test/runtests.jl:65 Testing failed after 519.73s ERROR: LoadError: Package OnlinePCA errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 988.15s: package tests unexpectedly errored