Package evaluation to test OceanTransportMatrixBuilder on Julia 1.10.10 (95f30e51f4*) started at 2026-02-02T15:42:25.162 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.10` Set-up completed after 4.93s ################################################################################ # Installation # Installing OceanTransportMatrixBuilder... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [c2b4a04e] + OceanTransportMatrixBuilder v0.8.2 Updating `~/.julia/environments/v1.10/Manifest.toml` [ec485272] + ArnoldiMethod v0.4.0 [864edb3b] + DataStructures v0.19.3 [b4f34e82] + Distances v0.10.12 [86223c79] + Graphs v1.13.4 [d25df0c9] + Inflate v0.1.5 [1914dd2f] + MacroTools v0.5.16 [c2b4a04e] + OceanTransportMatrixBuilder v0.8.2 [bac558e1] + OrderedCollections v1.8.1 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [82ae8749] + StatsAPI v1.8.0 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [b77e0a4c] + InteractiveUtils [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [d6f4376e] + Markdown [de0858da] + Printf [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.23+4 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.29s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/h9a3r/src/julia-1.9/activate_set.jl:63 Precompiling package dependencies... Precompiling packages... 3250.9 ms ✓ YAXArrayBase 1287.2 ms ✓ GibbsSeaWater 30389.6 ms ✓ TiffImages 10940.0 ms ✓ OceanTransportMatrixBuilder 2546.1 ms ✓ DiskArrayTools 2646.1 ms ✓ DimensionalData → DimensionalDataAbstractFFTsExt 2162.2 ms ✓ DimensionalData → DimensionalDataChainRulesCoreExt 11569.3 ms ✓ AWS 17577.2 ms ✓ MathTeXEngine 12512.6 ms ✓ KernelDensity 2027.8 ms ✓ NetCDF 2625.7 ms ✓ WeightedOnlineStats 9786.9 ms ✓ Optim 30462.3 ms ✓ SciMLBase → SciMLBaseDistributionsExt 8390.1 ms ✓ OptimizationBase 6305.8 ms ✓ Dagger → AbstractFFTsExt 83452.2 ms ✓ Dagger → GraphVizSimpleExt 944.2 ms ✓ YAXArrayBase → AxisArraysExt 3382.1 ms ✓ YAXArrayBase → DimensionalDataExt 5096.4 ms ✓ AWSS3 ✗ Makie 1146.0 ms ✓ YAXArrayBase → NetCDFExt 2263.7 ms ✓ OptimizationBase → OptimizationForwardDiffExt 653.7 ms ✓ OptimizationBase → OptimizationFiniteDiffExt 6557.0 ms ✓ Optimization 11877.3 ms ✓ Zarr ✗ DimensionalData → DimensionalDataMakieExt ✗ CairoMakie 105854.6 ms ✓ OptimizationOptimJL 25316.2 ms ✓ YAXArrayBase → ZarrExt 196624.0 ms ✓ DiskArrayEngine 281123.2 ms ✓ YAXArrays 29 dependencies successfully precompiled in 1653 seconds. 441 already precompiled. 3 dependencies had output during precompilation: ┌ YAXArrayBase → ZarrExt │ WARNING: redefinition of constant AWS.aws_config. This may fail, cause incorrect answers, or produce other errors. └ ┌ YAXArrays │ WARNING: redefinition of constant AWS.aws_config. This may fail, cause incorrect answers, or produce other errors. └ ┌ AWS │ WARNING: redefinition of constant AWS.aws_config. This may fail, cause incorrect answers, or produce other errors. └ ERROR: LoadError: The following 3 direct dependencies failed to precompile: CairoMakie Failed to precompile CairoMakie [13f3f980-e62b-5c42-98c6-ff1f3baf88f0] to "/home/pkgeval/.julia/compiled/v1.10/CairoMakie/jl_BNuamS". julia: /source/src/subtype.c:4817: sub_msp: Assertion `obvious_sub == 3 || obvious_sub == subtype || ijl_has_free_typevars(x) || ijl_has_free_typevars(y)' failed. [366] signal (6.-6): Aborted in expression starting at /home/pkgeval/.julia/packages/Makie/Vn16E/precompile/shared-precompile.jl:98 unknown function (ip: 0x775bee9a0ebc) gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x775bee93c394) __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) sub_msp at /source/src/subtype.c:4817 type_morespecific_ at /source/src/subtype.c:5075 type_morespecific_ at /source/src/subtype.c:5240 type_morespecific_ at /source/src/subtype.c:5240 type_morespecific_ at /source/src/subtype.c:5185 type_morespecific_ at /source/src/subtype.c:5143 type_morespecific_ at /source/src/subtype.c:5240 type_morespecific_ at /source/src/subtype.c:5237 tuple_morespecific at /source/src/subtype.c:4879 [inlined] type_morespecific_ at /source/src/subtype.c:5061 ml_matches at /source/src/gf.c:3700 ml_matches at /source/src/gf.c:3587 [inlined] _gf_invoke_lookup at /source/src/gf.c:3091 [inlined] jl_mt_assoc_by_type at /source/src/gf.c:1461 jl_lookup_generic_ at /source/src/gf.c:3048 [inlined] ijl_apply_generic at /source/src/gf.c:3073 jl_apply at /source/src/julia.h:1982 [inlined] do_apply at /source/src/builtins.c:768 _register_argument_conversions! at /home/pkgeval/.julia/packages/Makie/Vn16E/src/compute-plots.jl:496 register_arguments! at /home/pkgeval/.julia/packages/Makie/Vn16E/src/compute-plots.jl:382 [inlined] Plot at /home/pkgeval/.julia/packages/Makie/Vn16E/src/compute-plots.jl:769 unknown function (ip: 0x775bc8f8f0bc) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _create_plot! at /home/pkgeval/.julia/packages/Makie/Vn16E/src/figureplotting.jl:416 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_apply at /source/src/builtins.c:768 #poly!#78 at /home/pkgeval/.julia/packages/Makie/Vn16E/src/recipes.jl:534 poly! at /home/pkgeval/.julia/packages/Makie/Vn16E/src/recipes.jl:532 [inlined] initialize_block! at /home/pkgeval/.julia/packages/Makie/Vn16E/src/makielayout/blocks/toggle.jl:38 unknown function (ip: 0x775bc8f81c75) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_apply at /source/src/builtins.c:768 #_block#1911 at /home/pkgeval/.julia/packages/Makie/Vn16E/src/makielayout/blocks.jl:405 _block at /home/pkgeval/.julia/packages/Makie/Vn16E/src/makielayout/blocks.jl:321 [inlined] #_block#1910 at /home/pkgeval/.julia/packages/Makie/Vn16E/src/makielayout/blocks.jl:266 [inlined] _block at /home/pkgeval/.julia/packages/Makie/Vn16E/src/makielayout/blocks.jl:265 [inlined] #_#1908 at /home/pkgeval/.julia/packages/Makie/Vn16E/src/makielayout/blocks.jl:242 [inlined] Block at /home/pkgeval/.julia/packages/Makie/Vn16E/src/makielayout/blocks.jl:241 unknown function (ip: 0x775bc8f7c1f5) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46644.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 include at /home/pkgeval/.julia/packages/Makie/Vn16E/src/Makie.jl:1 [inlined] macro expansion at /home/pkgeval/.julia/packages/Makie/Vn16E/src/precompiles.jl:31 [inlined] macro expansion at /home/pkgeval/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] top-level scope at /home/pkgeval/.julia/packages/Makie/Vn16E/src/precompiles.jl:23 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_invoke at /source/src/gf.c:2902 jl_toplevel_eval_flex at /source/src/toplevel.c:925 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46644.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 include at /home/pkgeval/.julia/packages/Makie/Vn16E/src/Makie.jl:1 unknown function (ip: 0x775bedaa0a15) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_eval_module_expr at /source/src/toplevel.c:215 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:736 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 [inlined] include_package_for_output at ./loading.jl:2292 jfptr_include_package_for_output_81367.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 include_string at ./loading.jl:2156 [inlined] exec_options at ./client.jl:321 _start at ./client.jl:557 jfptr__start_83083.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x775bee93d249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) Allocations: 130321600 (Pool: 130216743; Big: 104857); GC: 127 ERROR: LoadError: Failed to precompile Makie [ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a] to "/home/pkgeval/.julia/compiled/v1.10/Makie/jl_ElSPj1". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2539 [3] compilecache @ ./loading.jl:2411 [inlined] [4] (::Base.var"#971#972"{Base.PkgId})() @ Base ./loading.jl:2044 [5] mkpidlock(f::Base.var"#971#972"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ ./essentials.jl:894 [inlined] [9] invokelatest @ ./essentials.jl:889 [inlined] [10] maybe_cachefile_lock(f::Base.var"#971#972"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3054 [11] maybe_cachefile_lock @ ./loading.jl:3051 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2040 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1882 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1873 [17] macro expansion @ ./loading.jl:1860 [inlined] [18] macro expansion @ ./lock.jl:267 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1823 [20] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [21] invoke_in_world @ ./essentials.jl:923 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1816 [23] include @ ./Base.jl:495 [inlined] [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2292 [25] top-level scope @ stdin:4 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/h1BHQ/src/CairoMakie.jl:1 in expression starting at stdin:4 DimensionalDataMakieExt Failed to precompile DimensionalDataMakieExt [80c3e3cc-8dc2-5d3e-a34b-94a782dacb40] to "/home/pkgeval/.julia/compiled/v1.10/DimensionalDataMakieExt/jl_OsBOKB". julia: /source/src/subtype.c:4817: sub_msp: Assertion `obvious_sub == 3 || obvious_sub == subtype || ijl_has_free_typevars(x) || ijl_has_free_typevars(y)' failed. [264] signal (6.-6): Aborted in expression starting at /home/pkgeval/.julia/packages/Makie/Vn16E/precompile/shared-precompile.jl:98 unknown function (ip: 0x79584f45febc) gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x79584f3fb394) __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) sub_msp at /source/src/subtype.c:4817 type_morespecific_ at /source/src/subtype.c:5075 type_morespecific_ at /source/src/subtype.c:5240 type_morespecific_ at /source/src/subtype.c:5240 type_morespecific_ at /source/src/subtype.c:5185 type_morespecific_ at /source/src/subtype.c:5143 type_morespecific_ at /source/src/subtype.c:5240 type_morespecific_ at /source/src/subtype.c:5237 tuple_morespecific at /source/src/subtype.c:4879 [inlined] type_morespecific_ at /source/src/subtype.c:5061 ml_matches at /source/src/gf.c:3700 ml_matches at /source/src/gf.c:3587 [inlined] _gf_invoke_lookup at /source/src/gf.c:3091 [inlined] jl_mt_assoc_by_type at /source/src/gf.c:1461 jl_lookup_generic_ at /source/src/gf.c:3048 [inlined] ijl_apply_generic at /source/src/gf.c:3073 jl_apply at /source/src/julia.h:1982 [inlined] do_apply at /source/src/builtins.c:768 _register_argument_conversions! at /home/pkgeval/.julia/packages/Makie/Vn16E/src/compute-plots.jl:496 register_arguments! at /home/pkgeval/.julia/packages/Makie/Vn16E/src/compute-plots.jl:382 [inlined] Plot at /home/pkgeval/.julia/packages/Makie/Vn16E/src/compute-plots.jl:769 unknown function (ip: 0x79582897b12c) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _create_plot! at /home/pkgeval/.julia/packages/Makie/Vn16E/src/figureplotting.jl:416 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_apply at /source/src/builtins.c:768 #poly!#78 at /home/pkgeval/.julia/packages/Makie/Vn16E/src/recipes.jl:534 poly! at /home/pkgeval/.julia/packages/Makie/Vn16E/src/recipes.jl:532 [inlined] initialize_block! at /home/pkgeval/.julia/packages/Makie/Vn16E/src/makielayout/blocks/toggle.jl:38 unknown function (ip: 0x79582896dce5) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_apply at /source/src/builtins.c:768 #_block#1911 at /home/pkgeval/.julia/packages/Makie/Vn16E/src/makielayout/blocks.jl:405 _block at /home/pkgeval/.julia/packages/Makie/Vn16E/src/makielayout/blocks.jl:321 [inlined] #_block#1910 at /home/pkgeval/.julia/packages/Makie/Vn16E/src/makielayout/blocks.jl:266 [inlined] _block at /home/pkgeval/.julia/packages/Makie/Vn16E/src/makielayout/blocks.jl:265 [inlined] #_#1908 at /home/pkgeval/.julia/packages/Makie/Vn16E/src/makielayout/blocks.jl:242 [inlined] Block at /home/pkgeval/.julia/packages/Makie/Vn16E/src/makielayout/blocks.jl:241 unknown function (ip: 0x795828968265) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46644.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 include at /home/pkgeval/.julia/packages/Makie/Vn16E/src/Makie.jl:1 [inlined] macro expansion at /home/pkgeval/.julia/packages/Makie/Vn16E/src/precompiles.jl:31 [inlined] macro expansion at /home/pkgeval/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] top-level scope at /home/pkgeval/.julia/packages/Makie/Vn16E/src/precompiles.jl:23 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_invoke at /source/src/gf.c:2902 jl_toplevel_eval_flex at /source/src/toplevel.c:925 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46644.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 include at /home/pkgeval/.julia/packages/Makie/Vn16E/src/Makie.jl:1 unknown function (ip: 0x79584e348e45) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_eval_module_expr at /source/src/toplevel.c:215 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:736 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 [inlined] include_package_for_output at ./loading.jl:2292 jfptr_include_package_for_output_81367.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 include_string at ./loading.jl:2156 [inlined] exec_options at ./client.jl:321 _start at ./client.jl:557 jfptr__start_83083.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x79584f3fc249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) Allocations: 132807469 (Pool: 132697351; Big: 110118); GC: 117 ERROR: LoadError: Failed to precompile Makie [ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a] to "/home/pkgeval/.julia/compiled/v1.10/Makie/jl_Qe4LiJ". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2539 [3] compilecache @ ./loading.jl:2411 [inlined] [4] (::Base.var"#971#972"{Base.PkgId})() @ Base ./loading.jl:2044 [5] mkpidlock(f::Base.var"#971#972"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ ./essentials.jl:894 [inlined] [9] invokelatest @ ./essentials.jl:889 [inlined] [10] maybe_cachefile_lock(f::Base.var"#971#972"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3054 [11] maybe_cachefile_lock @ ./loading.jl:3051 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2040 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1882 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1873 [17] macro expansion @ ./loading.jl:1860 [inlined] [18] macro expansion @ ./lock.jl:267 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1823 [20] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [21] invoke_in_world @ ./essentials.jl:923 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1816 [23] include @ ./Base.jl:495 [inlined] [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2292 [25] top-level scope @ stdin:4 in expression starting at /home/pkgeval/.julia/packages/DimensionalData/FWnw9/ext/DimensionalDataMakieExt.jl:1 in expression starting at stdin:4 Makie Failed to precompile Makie [ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a] to "/home/pkgeval/.julia/compiled/v1.10/Makie/jl_dxtM0C". julia: /source/src/subtype.c:4817: sub_msp: Assertion `obvious_sub == 3 || obvious_sub == subtype || ijl_has_free_typevars(x) || ijl_has_free_typevars(y)' failed. [184] signal (6.-6): Aborted in expression starting at /home/pkgeval/.julia/packages/Makie/Vn16E/precompile/shared-precompile.jl:98 unknown function (ip: 0x771b5a0ecebc) gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x771b5a088394) __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) sub_msp at /source/src/subtype.c:4817 type_morespecific_ at /source/src/subtype.c:5075 type_morespecific_ at /source/src/subtype.c:5240 type_morespecific_ at /source/src/subtype.c:5240 type_morespecific_ at /source/src/subtype.c:5185 type_morespecific_ at /source/src/subtype.c:5143 type_morespecific_ at /source/src/subtype.c:5240 type_morespecific_ at /source/src/subtype.c:5237 tuple_morespecific at /source/src/subtype.c:4879 [inlined] type_morespecific_ at /source/src/subtype.c:5061 ml_matches at /source/src/gf.c:3700 ml_matches at /source/src/gf.c:3587 [inlined] _gf_invoke_lookup at /source/src/gf.c:3091 [inlined] jl_mt_assoc_by_type at /source/src/gf.c:1461 jl_lookup_generic_ at /source/src/gf.c:3048 [inlined] ijl_apply_generic at /source/src/gf.c:3073 jl_apply at /source/src/julia.h:1982 [inlined] do_apply at /source/src/builtins.c:768 _register_argument_conversions! at /home/pkgeval/.julia/packages/Makie/Vn16E/src/compute-plots.jl:496 register_arguments! at /home/pkgeval/.julia/packages/Makie/Vn16E/src/compute-plots.jl:382 [inlined] Plot at /home/pkgeval/.julia/packages/Makie/Vn16E/src/compute-plots.jl:769 unknown function (ip: 0x771b347bd6ec) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _create_plot! at /home/pkgeval/.julia/packages/Makie/Vn16E/src/figureplotting.jl:416 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_apply at /source/src/builtins.c:768 #poly!#78 at /home/pkgeval/.julia/packages/Makie/Vn16E/src/recipes.jl:534 poly! at /home/pkgeval/.julia/packages/Makie/Vn16E/src/recipes.jl:532 [inlined] initialize_block! at /home/pkgeval/.julia/packages/Makie/Vn16E/src/makielayout/blocks/toggle.jl:38 unknown function (ip: 0x771b347b02a5) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_apply at /source/src/builtins.c:768 #_block#1911 at /home/pkgeval/.julia/packages/Makie/Vn16E/src/makielayout/blocks.jl:405 _block at /home/pkgeval/.julia/packages/Makie/Vn16E/src/makielayout/blocks.jl:321 [inlined] #_block#1910 at /home/pkgeval/.julia/packages/Makie/Vn16E/src/makielayout/blocks.jl:266 [inlined] _block at /home/pkgeval/.julia/packages/Makie/Vn16E/src/makielayout/blocks.jl:265 [inlined] #_#1908 at /home/pkgeval/.julia/packages/Makie/Vn16E/src/makielayout/blocks.jl:242 [inlined] Block at /home/pkgeval/.julia/packages/Makie/Vn16E/src/makielayout/blocks.jl:241 unknown function (ip: 0x771b347aa825) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46644.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 include at /home/pkgeval/.julia/packages/Makie/Vn16E/src/Makie.jl:1 [inlined] macro expansion at /home/pkgeval/.julia/packages/Makie/Vn16E/src/precompiles.jl:31 [inlined] macro expansion at /home/pkgeval/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] top-level scope at /home/pkgeval/.julia/packages/Makie/Vn16E/src/precompiles.jl:23 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_invoke at /source/src/gf.c:2902 jl_toplevel_eval_flex at /source/src/toplevel.c:925 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46644.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 include at /home/pkgeval/.julia/packages/Makie/Vn16E/src/Makie.jl:1 unknown function (ip: 0x771b58f48775) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_eval_module_expr at /source/src/toplevel.c:215 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:736 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 [inlined] include_package_for_output at ./loading.jl:2292 jfptr_include_package_for_output_81338.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 include_string at ./loading.jl:2156 [inlined] exec_options at ./client.jl:321 _start at ./client.jl:557 jfptr__start_83083.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x771b5a089249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) Allocations: 131699145 (Pool: 131590460; Big: 108685); GC: 117 in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 1667.02s ################################################################################ # Testing # Testing OceanTransportMatrixBuilder ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1829 Status `/tmp/jl_4taxS3/Project.toml` [336ed68f] CSV v0.10.15 [13f3f980] CairoMakie v0.15.8 [a93c6f00] DataFrames v1.8.1 [0703355e] DimensionalData v0.29.25 [b4f34e82] Distances v0.10.12 [9a22fb26] GibbsSeaWater v0.1.4 ⌃ [86223c79] Graphs v1.13.1 [ee78f7c6] Makie v0.24.8 [b946abbf] NaNStatistics v0.6.54 [30363a11] NetCDF v0.12.2 [c2b4a04e] OceanTransportMatrixBuilder v0.8.2 [90137ffa] StaticArrays v1.9.16 [f8b46487] TestItemRunner v1.1.4 [1c621080] TestItems v1.0.0 [1986cc42] Unitful v1.28.0 [c21b50f5] YAXArrays v0.7.1 [0a941bbe] Zarr v0.9.6 [f43a241f] Downloads v1.6.0 [37e2e46d] LinearAlgebra [2f01184e] SparseArrays v1.10.0 [8dfed614] Test Status `/tmp/jl_4taxS3/Manifest.toml` [47edcb42] ADTypes v1.21.0 [fbe9abb3] AWS v1.97.1 [1c724243] AWSS3 v0.11.4 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 [31f734f8] ArrowTypes v2.3.0 [a9b6321e] Atomix v1.1.2 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [18cc8868] BaseDirs v1.3.2 [d1d4a3ce] BitFlags v0.1.9 [a74b3585] Blosc v0.7.3 [fa961155] CEnum v0.5.0 [179af706] CFTime v0.2.5 [96374032] CRlibm v1.0.2 [336ed68f] CSV v0.10.15 [159f3aea] Cairo v1.1.1 [13f3f980] CairoMakie v0.15.8 [d360d2e6] ChainRulesCore v1.26.0 [0b6fb165] ChunkCodecCore v1.0.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [6309b1aa] CodecInflate64 v0.1.3 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.2 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [95dc2771] ComputePipeline v0.1.6 [5060bff5] ConcurrentCollections v0.1.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [a8cc5b0e] 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[deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.2+1 [14a3606d] MozillaCACerts_jll v2023.1.10 [4536629a] OpenBLAS_jll v0.3.23+4 [05823500] OpenLibm_jll v0.8.5+0 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... [ Info: Loading catalog [ Info: Finding ztores for uo, vo, umo, vmo, mlotst, areacello, and volcello areacello_store = (filter((row->(#= /home/pkgeval/.julia/packages/OceanTransportMatrixBuilder/ERnUp/test/online.jl:23 =# row.variable_id == "areacello" && (row.table_id == "Ofx" && common_filter(row)))), catalog)).zstore[1] = "gs://cmip6/CMIP6/CMIP/CSIRO/ACCESS-ESM1-5/historical/r1i1p1f1/Ofx/areacello/gn/v20191115/" volcello_store = (filter((row->(#= /home/pkgeval/.julia/packages/OceanTransportMatrixBuilder/ERnUp/test/online.jl:24 =# row.variable_id == "volcello" && (row.table_id == "Ofx" && common_filter(row)))), catalog)).zstore[1] = "gs://cmip6/CMIP6/CMIP/CSIRO/ACCESS-ESM1-5/historical/r1i1p1f1/Ofx/volcello/gn/v20191115/" mlotst_store = (filter((row->(#= /home/pkgeval/.julia/packages/OceanTransportMatrixBuilder/ERnUp/test/online.jl:25 =# row.variable_id == "mlotst" && (row.table_id == "Omon" && common_filter(row)))), catalog)).zstore[1] = "gs://cmip6/CMIP6/CMIP/CSIRO/ACCESS-ESM1-5/historical/r1i1p1f1/Omon/mlotst/gn/v20191115/" umo_store = (filter((row->(#= /home/pkgeval/.julia/packages/OceanTransportMatrixBuilder/ERnUp/test/online.jl:26 =# row.variable_id == "umo" && (row.table_id == "Omon" && common_filter(row)))), catalog)).zstore[1] = "gs://cmip6/CMIP6/CMIP/CSIRO/ACCESS-ESM1-5/historical/r1i1p1f1/Omon/umo/gn/v20191115/" vmo_store = (filter((row->(#= /home/pkgeval/.julia/packages/OceanTransportMatrixBuilder/ERnUp/test/online.jl:27 =# row.variable_id == "vmo" && (row.table_id == "Omon" && common_filter(row)))), catalog)).zstore[1] = "gs://cmip6/CMIP6/CMIP/CSIRO/ACCESS-ESM1-5/historical/r1i1p1f1/Omon/vmo/gn/v20191115/" uo_store = (filter((row->(#= /home/pkgeval/.julia/packages/OceanTransportMatrixBuilder/ERnUp/test/online.jl:28 =# row.variable_id == "uo" && (row.table_id == "Omon" && common_filter(row)))), catalog)).zstore[1] = "gs://cmip6/CMIP6/CMIP/CSIRO/ACCESS-ESM1-5/historical/r1i1p1f1/Omon/uo/gn/v20191115/" vo_store = (filter((row->(#= /home/pkgeval/.julia/packages/OceanTransportMatrixBuilder/ERnUp/test/online.jl:29 =# row.variable_id == "vo" && (row.table_id == "Omon" && common_filter(row)))), catalog)).zstore[1] = "gs://cmip6/CMIP6/CMIP/CSIRO/ACCESS-ESM1-5/historical/r1i1p1f1/Omon/vo/gn/v20191115/" [ Info: Lazily load data using Zarr [ Info: Select first time step to limit download size [ Info: Load variables in memory [ Info: Timescales (divergence and mass conservation) [ Info: T: [ Info: div: 1.6e-5 Myr [ Info: vol: 6.1e6 Myr [ Info: Tadv: [ Info: div: 1.6e-5 Myr [ Info: vol: 9.9e8 Myr [ Info: TκH: [ Info: div: 5.7e8 Myr [ Info: vol: 7.9e8 Myr [ Info: TκVML: [ Info: div: 1.4e7 Myr [ Info: vol: 7.1e7 Myr [ Info: TκVdeep: [ Info: div: 2.0e10 Myr [ Info: vol: 1.1e11 Myr [ Info: coarsening grid ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 780 running 1 of 1 signal (10): User defined signal 1 setindex! at ./array.jl:1021 [inlined] fill! at ./array.jl:395 [inlined] zeros at ./array.jl:637 [inlined] zeros at ./array.jl:632 [inlined] getindex_I_sorted_linear at /source/usr/share/julia/stdlib/v1.10/SparseArrays/src/sparsematrix.jl:2865 getindex_I_sorted at /source/usr/share/julia/stdlib/v1.10/SparseArrays/src/sparsematrix.jl:2792 getindex at /source/usr/share/julia/stdlib/v1.10/SparseArrays/src/sparsematrix.jl:3060 copy at /source/usr/share/julia/stdlib/v1.10/SparseArrays/src/sparsevector.jl:809 [inlined] triu at /source/usr/share/julia/stdlib/v1.10/LinearAlgebra/src/generic.jl:341 [inlined] SimpleGraph at /home/pkgeval/.julia/packages/Graphs/rEutM/src/SimpleGraphs/simplegraph.jl:98 SimpleGraph at /home/pkgeval/.julia/packages/Graphs/rEutM/src/SimpleGraphs/simplegraph.jl:87 [inlined] #lump_and_spray#67 at /home/pkgeval/.julia/packages/OceanTransportMatrixBuilder/ERnUp/src/extratools.jl:72 lump_and_spray at /home/pkgeval/.julia/packages/OceanTransportMatrixBuilder/ERnUp/src/extratools.jl:38 unknown function (ip: 0x7687959faf9d) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 include_string at ./loading.jl:2156 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 #invokelatest#2 at ./essentials.jl:892 [inlined] invokelatest at ./essentials.jl:889 [inlined] #8 at /home/pkgeval/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:119 [inlined] withpath at /home/pkgeval/.julia/packages/TestItemRunner/ax5HJ/src/vendored_code.jl:7 #7 at /home/pkgeval/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:118 [inlined] cd at ./file.jl:112 unknown function (ip: 0x7687b0f7a079) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 run_testitem at /home/pkgeval/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:117 unknown function (ip: 0x7687b0f74660) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #run_tests#13 at /home/pkgeval/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:230 run_tests at /home/pkgeval/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:134 unknown function (ip: 0x7687b0f6db89) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./client.jl:494 unknown function (ip: 0x7687b0f00125) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] exec_options at ./client.jl:296 _start at ./client.jl:557 jfptr__start_83083.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7687b2035249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 poptask at ./task.jl:999 wait at ./task.jl:1008 #wait#647 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:661 jfptr_wait_74801.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 subprocess_handler at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2048 #130 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1992 withenv at ./env.jl:257 #117 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1840 with_temp_env at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1721 #115 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1810 #mktempdir#24 at ./file.jl:766 unknown function (ip: 0x71c4e8d55b40) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 mktempdir at ./file.jl:762 mktempdir at ./file.jl:762 [inlined] #sandbox#114 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1768 sandbox at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1759 unknown function (ip: 0x71c4e8d4e445) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #test#127 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1971 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:423 unknown function (ip: 0x71c4e8d4df30) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #test#77 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 unknown function (ip: 0x71c4e8d4d7f0) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 unknown function (ip: 0x71c4e8d49ee9) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 eval_body at /source/src/interpreter.c:544 eval_body at /source/src/interpreter.c:544 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./Base.jl:495 jfptr_include_46644.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 exec_options at ./client.jl:323 _start at ./client.jl:557 jfptr__start_83083.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] true_main at /source/src/jlapi.c:582 jl_repl_entrypoint at /source/src/jlapi.c:731 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x71c4e9dc7249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.10/Profile/src/Profile.jl:1225 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x000071c4dd1fc010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:557; _start() ╎ 1 @Base/client.jl:323; exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:495; include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2206; _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2146; include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:385; eval ╎ ╎ 1 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 1 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 1 @Pkg/src/API.jl:147; test ╎ ╎ 1 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 1 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 1 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec}; i… ╎ ╎ ╎ 1 @Pkg/src/API.jl:423; kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 1 @Pkg/src/API.jl:444; test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 1 …/src/Operations.jl:1915; test ╎ ╎ ╎ 1 …src/Operations.jl:1971; test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1759; kwcall(::@NamedTuple{preferences::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1768; sandbox(fn::Function, ctx::Pkg.Ty… ╎ ╎ ╎ ╎ 1 @Base/file.jl:762; mktempdir ╎ ╎ ╎ ╎ 1 @Base/file.jl:762; mktempdir(fn::Function, parent::Strin… ╎ ╎ ╎ ╎ 1 @Base/file.jl:766; mktempdir(fn::Pkg.Operations.var"#11… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1810; (::Pkg.Operations.var"#115#120"… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1721; with_temp_env(fn::Pkg.Operatio… ╎ ╎ ╎ ╎ ╎ 1 …/Operations.jl:1840; (::Pkg.Operations.var"#117#122… ╎ ╎ ╎ ╎ ╎ 1 @Base/env.jl:257; withenv(::Pkg.Operations.var"#130… ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:1992; (::Pkg.Operations.var"#130#13… ╎ ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:2048; subprocess_handler(cmd::Cmd,… ╎ ╎ ╎ ╎ ╎ ╎ 1 …se/process.jl:661; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 1 …/condition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 1 …condition.jl:130; wait(c::Base.GenericConditi… ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:1008; wait() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:999; poptask(W::Base.IntrusiveL… [780] signal (15): Terminated in expression starting at /home/pkgeval/.julia/packages/OceanTransportMatrixBuilder/ERnUp/test/online.jl:129 setindex! at ./array.jl:1021 [inlined] fill! at ./array.jl:395 [inlined] zeros at ./array.jl:637 [inlined] zeros at ./array.jl:632 [inlined] getindex_I_sorted_linear at /source/usr/share/julia/stdlib/v1.10/SparseArrays/src/sparsematrix.jl:2865 getindex_I_sorted at /source/usr/share/julia/stdlib/v1.10/SparseArrays/src/sparsematrix.jl:2792 getindex at /source/usr/share/julia/stdlib/v1.10/SparseArrays/src/sparsematrix.jl:3060 copy at /source/usr/share/julia/stdlib/v1.10/SparseArrays/src/sparsevector.jl:809 [inlined] triu at /source/usr/share/julia/stdlib/v1.10/LinearAlgebra/src/generic.jl:341 [inlined] SimpleGraph at /home/pkgeval/.julia/packages/Graphs/rEutM/src/SimpleGraphs/simplegraph.jl:98 SimpleGraph at /home/pkgeval/.julia/packages/Graphs/rEutM/src/SimpleGraphs/simplegraph.jl:87 [inlined] #lump_and_spray#67 at /home/pkgeval/.julia/packages/OceanTransportMatrixBuilder/ERnUp/src/extratools.jl:72 lump_and_spray at /home/pkgeval/.julia/packages/OceanTransportMatrixBuilder/ERnUp/src/extratools.jl:38 unknown function (ip: 0x7687959faf9d) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 include_string at ./loading.jl:2156 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] jl_f__call_latest at /source/src/builtins.c:812 #invokelatest#2 at ./essentials.jl:892 [inlined] invokelatest at ./essentials.jl:889 [inlined] #8 at /home/pkgeval/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:119 [inlined] withpath at /home/pkgeval/.julia/packages/TestItemRunner/ax5HJ/src/vendored_code.jl:7 #7 at /home/pkgeval/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:118 [inlined] cd at ./file.jl:112 unknown function (ip: 0x7687b0f7a079) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 run_testitem at /home/pkgeval/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:117 unknown function (ip: 0x7687b0f74660) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 #run_tests#13 at /home/pkgeval/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:230 run_tests at /home/pkgeval/.julia/packages/TestItemRunner/ax5HJ/src/TestItemRunner.jl:134 unknown function (ip: 0x7687b0f6db89) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] include_string at ./loading.jl:2146 _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 _include at ./loading.jl:2206 include at ./client.jl:494 unknown function (ip: 0x7687b0f00125) _jl_invoke at /source/src/gf.c:2876 [inlined] ijl_apply_generic at /source/src/gf.c:3077 jl_apply at /source/src/julia.h:1982 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:635 jl_interpret_toplevel_thunk at /source/src/interpreter.c:775 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:877 ijl_toplevel_eval_in at /source/src/toplevel.c:985 eval at ./boot.jl:385 [inlined] exec_options at ./client.jl:296 _start at ./client.jl:557 jfptr__start_83083.1 at /opt/julia/lib/julia/sys.so (unknown line) PkgEval terminated after 2723.03s: test duration exceeded the time limit