Package evaluation to test NetworkDynamics on Julia 1.10.10 (c8be17dcfd*) started at 2026-02-03T00:20:23.845 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.10` Set-up completed after 5.37s ################################################################################ # Installation # Installing NetworkDynamics... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [22e9dc34] + NetworkDynamics v0.10.15 Updating `~/.julia/environments/v1.10/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 [a9b6321e] + Atomix v1.1.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] + BracketingNonlinearSolve v1.6.2 [2a0fbf3d] + CPUSummary v0.2.7 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [864edb3b] + DataStructures v0.19.3 [2b5f629d] + DiffEqBase v6.200.0 [459566f4] + DiffEqCallbacks v4.12.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.16 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.6 [f151be2c] + EnzymeCore v0.8.18 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.3.1 [6a86dc24] + FiniteDiff v2.29.0 [f6369f11] + ForwardDiff v1.3.2 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.13.4 [076d061b] + HashArrayMappedTries v0.2.0 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 [63c18a36] + KernelAbstractions v0.9.39 [ba0b0d4f] + Krylov v0.10.5 [10f19ff3] + LayoutPointers v0.1.17 [87fe0de2] + LineSearch v0.1.6 [7ed4a6bd] + LinearSolve v3.57.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [2a8e4939] + Mixers v0.1.2 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [872c559c] + NNlib v0.9.33 [77ba4419] + NaNMath v1.1.3 [22e9dc34] + NetworkDynamics v0.10.15 [8913a72c] + NonlinearSolve v4.15.0 [be0214bd] + NonlinearSolveBase v2.11.2 [5959db7a] + NonlinearSolveFirstOrder v1.11.1 [9a2c21bd] + NonlinearSolveQuasiNewton v1.12.0 [26075421] + NonlinearSolveSpectralMethods v1.6.0 [bac558e1] + OrderedCollections v1.8.1 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [d236fae5] + PreallocationTools v1.1.2 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.47.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.17 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.136.0 [19f34311] + SciMLJacobianOperators v0.1.12 [a6db7da4] + SciMLLogging v1.8.0 [c0aeaf25] + SciMLOperators v1.15.1 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.10.0 [7e506255] + ScopedValues v1.5.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.10.0 [699a6c99] + SimpleTraits v0.9.5 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [9672c7b4] + SteadyStateDiffEq v2.9.0 [7792a7ef] + StrideArraysCore v0.5.8 [f489334b] + StyledStrings v1.0.3 [2efcf032] + SymbolicIndexingInterface v0.3.46 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [781d530d] + TruncatedStacktraces v1.4.0 [013be700] + UnsafeAtomics v0.3.0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [4af54fe1] + LazyArtifacts [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.23+5 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 9.63s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/h9a3r/src/julia-1.9/activate_set.jl:63 Precompiling package dependencies... ┌ Warning: Circular dependency detected. │ Precompilation will be skipped for dependencies in this cycle: │ ┌ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt │ └─ OrdinaryDiffEqCore → OrdinaryDiffEqCoreSparseArraysExt │ Precompilation will also be skipped for the following, which depend on the above cycle: │ ModelingToolkit │ OrdinaryDiffEqTsit5 │ ModelingToolkitBase → MTKLatexifyExt │ OrdinaryDiffEqRosenbrock │ ModelingToolkitBase → MTKChainRulesCoreExt │ OrdinaryDiffEqCore → OrdinaryDiffEqCoreMooncakeExt │ ModelingToolkitBase │ OrdinaryDiffEqDifferentiation │ OrdinaryDiffEqNonlinearSolve │ OrdinaryDiffEqSDIRK │ ModelingToolkitTearing │ OrdinaryDiffEqDifferentiation → OrdinaryDiffEqDifferentiationSparseArraysExt │ ImplicitDiscreteSolve │ ModelingToolkitBase → MTKDynamicQuantitiesExt └ @ Pkg.API.Precompilation /opt/julia/share/julia/stdlib/v1.10/Pkg/src/precompilation.jl:583 Precompiling packages... 45994.9 ms ✓ NLSolversBase 58741.9 ms ✓ DifferentiationInterfaceTest 12730.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt ✗ Atomix → AtomixCUDAExt 74536.9 ms ✓ SciMLBase → SciMLBaseMooncakeExt 36077.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt ✗ Makie 147774.7 ms ✓ NonlinearSolveBase → NonlinearSolveBaseEnzymeExt 5968.9 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 124463.4 ms ✓ JumpProcesses 22488.6 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 10027.7 ms ✓ SteadyStateDiffEq 5689.2 ms ✓ LineSearches 60432.1 ms ✓ DifferentiationInterfaceTest → DifferentiationInterfaceTestStaticArraysExt 6854.4 ms ✓ DifferentiationInterfaceTest → DifferentiationInterfaceTestChairmarksExt ✗ CUDA → ChainRulesCoreExt ✗ CUDA → SpecialFunctionsExt ✗ CUDA → EnzymeCoreExt ✗ SparseMatrixColorings → SparseMatrixColoringsCUDAExt ✗ ArrayInterface → ArrayInterfaceCUDAExt 83362.8 ms ✓ NonlinearSolveBase → NonlinearSolveBaseMooncakeExt 32128.3 ms ✓ LinearSolve → LinearSolveMooncakeExt ✗ Makie → MakieDynamicQuantitiesExt ✗ DomainSets → DomainSetsMakieExt ✗ GraphMakie ✗ WGLMakie ✗ DataInterpolations → DataInterpolationsMakieExt ✗ SciMLBase → SciMLBaseMakieExt ✗ CairoMakie 40320.7 ms ✓ JumpProcesses → JumpProcessesKernelAbstractionsExt ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 6 running 0 of 1 signal (10): User defined signal 1 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 poptask at ./task.jl:999 wait at ./task.jl:1008 #wait#647 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:142 #728 at ./asyncevent.jl:304 jfptr_YY.728_76177.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2878 [inlined] ijl_apply_generic at /source/src/gf.c:3079 jl_apply at /source/src/julia.h:1982 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 poptask at ./task.jl:999 wait at ./task.jl:1008 task_done_hook at ./task.jl:682 jfptr_task_done_hook_75472.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2878 [inlined] ijl_apply_generic at /source/src/gf.c:3079 jl_apply at /source/src/julia.h:1982 [inlined] jl_finish_task at /source/src/task.c:323 start_task at /source/src/task.c:1264 unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.10/Profile/src/Profile.jl:1225 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x00007053efd14fb0 Total snapshots: 1. Utilization: 0% ╎1 @Base/task.jl:682; task_done_hook(t::Task) ╎ 1 @Base/task.jl:1008; wait() ╎ 1 @Base/task.jl:999; poptask(W::Base.IntrusiveLinkedListSynchronized{Task}) ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.10/Profile/src/Profile.jl:1225 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x000077cd26a56bd0 Total snapshots: 98. Utilization: 0% ╎98 @Base/asyncevent.jl:304; (::Base.var"#728#729"{FileWatching.Pidfile.var"#… ╎ 98 @Base/asyncevent.jl:142; _trywait(t::Timer) ╎ 98 @Base/condition.jl:125; wait ╎ 98 @Base/condition.jl:130; wait(c::Base.GenericCondition{Base.Threads.Spi… ╎ 98 @Base/task.jl:1008; wait() 97╎ 98 @Base/task.jl:999; poptask(W::Base.IntrusiveLinkedListSynchronized{T… [6] signal (15): Terminated in expression starting at /PkgEval.jl/scripts/precompile.jl:34 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 [1] signal (15): Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:156 epoll_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/epoll.c:236 uv_run at /workspace/srcdir/libuv/src/unix/core.c:400 ijl_task_get_next at /source/src/partr.c:478 poptask at ./task.jl:999 poptask at ./task.jl:999 wait at ./task.jl:1008 wait at ./task.jl:1008 #wait#647 at ./condition.jl:130 #wait#647 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:142 _trywait at ./asyncevent.jl:142 wait at ./asyncevent.jl:159 [inlined] profile_printing_listener at ./Base.jl:572 wait at ./asyncevent.jl:159 [inlined] profile_printing_listener at ./Base.jl:572 #1058 at ./Base.jl:608 #1058 at ./Base.jl:608 jfptr_YY.1058_85352.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2878 [inlined] ijl_apply_generic at /source/src/gf.c:3079 jfptr_YY.1058_85352.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2878 [inlined] ijl_apply_generic at /source/src/gf.c:3079 jl_apply at /source/src/julia.h:1982 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) Allocations: 64572398 (Pool: 64309941; Big: 262457); GC: 62 jl_apply at /source/src/julia.h:1982 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) Allocations: 5981814 (Pool: 5964071; Big: 17743); GC: 8 ┌ Warning: Failed to clean up temporary path "/tmp/jl_peNKM8" │ ErrorException("schedule: Task not runnable") └ @ Base.Filesystem file.jl:549 schedule: Task not runnable PkgEval terminated after 2757.47s: test duration exceeded the time limit