Package evaluation to test MolecularGraph on Julia 1.10.10 (c8be17dcfd*) started at 2026-02-02T18:15:36.603 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.10` Set-up completed after 5.13s ################################################################################ # Installation # Installing MolecularGraph... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [6c89ec66] + MolecularGraph v0.22.0 Updating `~/.julia/environments/v1.10/Manifest.toml` [ec485272] + ArnoldiMethod v0.4.0 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [864edb3b] + DataStructures v0.19.3 [8bb1440f] + DelimitedFiles v1.9.1 [411431e0] + Extents v0.1.6 [53c48c17] + FixedPointNumbers v0.8.5 [5c1252a2] + GeometryBasics v0.5.10 [86223c79] + Graphs v1.13.4 [d25df0c9] + Inflate v0.1.5 [8197267c] + IntervalSets v0.7.13 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.4.0 [1914dd2f] + MacroTools v0.5.16 [20f20a25] + MakieCore v0.10.0 [6c89ec66] + MolecularGraph v0.22.0 [510215fc] + Observables v0.5.5 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [189a3867] + Reexport v1.2.2 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [69024149] + StringEncodings v0.3.7 [ec057cc2] + StructUtils v2.6.2 [ddb6d928] + YAML v0.4.16 [5ae413db] + EarCut_jll v2.2.4+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [f6050b86] + coordgenlibs_jll v3.0.2+0 [172afb32] + libinchi_jll v1.6.0+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [b77e0a4c] + InteractiveUtils [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.23+5 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 9.58s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 1458.5 ms ✓ coordgenlibs_jll 868.5 ms ✓ libinchi_jll 34248.4 ms ✓ MolecularGraph 3 dependencies successfully precompiled in 38 seconds. 37 already precompiled. Precompilation completed after 51.1s ################################################################################ # Testing # Testing MolecularGraph Status `/tmp/jl_HpVtne/Project.toml` [5ae59095] Colors v0.13.1 [8bb1440f] DelimitedFiles v1.9.1 [5c1252a2] GeometryBasics v0.5.10 [86223c79] Graphs v1.13.4 [682c06a0] JSON v1.4.0 [20f20a25] MakieCore v0.10.0 [6c89ec66] MolecularGraph v0.22.0 [bac558e1] OrderedCollections v1.8.1 [ec057cc2] StructUtils v2.6.2 [ddb6d928] YAML v0.4.16 [f6050b86] coordgenlibs_jll v3.0.2+0 [172afb32] libinchi_jll v1.6.0+0 [ade2ca70] Dates [37e2e46d] LinearAlgebra [56ddb016] Logging [de0858da] Printf [10745b16] Statistics v1.10.0 [8dfed614] Test Status `/tmp/jl_HpVtne/Manifest.toml` [ec485272] ArnoldiMethod v0.4.0 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [864edb3b] DataStructures v0.19.3 [8bb1440f] DelimitedFiles v1.9.1 [411431e0] Extents v0.1.6 [53c48c17] FixedPointNumbers v0.8.5 [5c1252a2] GeometryBasics v0.5.10 [86223c79] Graphs v1.13.4 [d25df0c9] Inflate v0.1.5 [8197267c] IntervalSets v0.7.13 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 [1914dd2f] MacroTools v0.5.16 [20f20a25] MakieCore v0.10.0 [6c89ec66] MolecularGraph v0.22.0 [510215fc] Observables v0.5.5 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.1 [189a3867] Reexport v1.2.2 [699a6c99] SimpleTraits v0.9.5 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [69024149] StringEncodings v0.3.7 [ec057cc2] StructUtils v2.6.2 [ddb6d928] YAML v0.4.16 [5ae413db] EarCut_jll v2.2.4+0 [94ce4f54] Libiconv_jll v1.18.0+0 [f6050b86] coordgenlibs_jll v3.0.2+0 [172afb32] libinchi_jll v1.6.0+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [b77e0a4c] InteractiveUtils [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.23+5 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time util.geometry | 26 26 3.8s Test Summary: | Pass Total Time util.iterator | 22 22 1.6s Test Summary: | Pass Total Time util.math | 4 4 0.1s Test Summary: | Pass Total Time operator | 20 20 2.6s Test Summary: | Pass Total Time cycle | 8 8 3.4s Test Summary: | Pass Total Time bipartite | 4 4 2.1s Test Summary: | Pass Total Time matching | 12 12 4.6s Test Summary: | Pass Total Time graph.planarity | 42 42 5.7s Test Summary: | Pass Total Time clique | 22 22 3.1s Test Summary: | Pass Total Time isomorphism_vf2 | 23 23 6.3s Test Summary: | Pass Total Time isomorphism_clique | 15 15 30.6s Test Summary: | Pass Total Time model.atom | 18 18 0.8s Test Summary: | Pass Total Time model.bond | 10 10 0.3s Test Summary: | Pass Total Time model.molgraph | 76 76 14.0s Test Summary: | Pass Total Time model.query | 43 43 9.0s Test Summary: | Pass Total Time smarts.base | 8 8 0.2s Test Summary: | Pass Total Time smarts.logicaloperator | 24 24 0.7s Test Summary: | Pass Broken Total Time smarts.atom | 80 1 81 2.2s Test Summary: | Pass Total Time smarts.bond | 11 11 0.4s Test Summary: | Pass Total Time smarts.molecule | 34 34 1.3s Test Summary: | Pass Total Time smarts.smiles | 53 53 6.4s Test Summary: | Pass Total Time smarts.smarts | 10 10 2.9s [ Info: sdfile parse error - unsupported atom symbol X (#2 in sdfilereader) [ Info: sdfile parse error - unsupported bond order 8 (#1 in sdfilereader) Test Summary: | Pass Total Time sdfilereader | 74 74 8.5s [ Info: 100 records exported. Test Summary: | Pass Total Time sdfilewriter | 6 6 8.7s Test Summary: | Pass Total Time json | 34 34 31.7s Test Summary: | Pass Total Time stereo | 92 92 5.1s Test Summary: | Pass Total Time preprocess | 69 69 3.2s Test Summary: | Pass Total Time coords.descriptor | 3 3 1.3s Test Summary: | Pass Total Time coords | 2 2 0.2s Test Summary: | Pass Total Time properties | 105 105 4.8s Test Summary: | Pass Total Time mass | 23 23 1.8s Test Summary: | Pass Total Time wclogp | 10 10 11.3s Test Summary: | Pass Broken Total Time inchi | 6 1 7 4.5s Test Summary: | Pass Total Time virtualatom | 13 13 9.9s Test Summary: | Pass Total Time structurematch | 93 93 16.5s Test Summary: | Pass Total Time structurematch_mcs | 34 34 3.4s [ Info: MolecularGraph.querymatch: maxsize exceeded Test Summary: | Pass Total Time querycontainment | 79 79 2.6s Test Summary: | Pass Total Time draw.base | 17 17 3.9s Test Summary: | Time svg | None 13.7s Test Summary: | Pass Total Time draw3d | 1 1 0.1s Testing MolecularGraph tests passed Testing completed after 253.93s PkgEval succeeded after 323.82s