Package evaluation to test MatrixLMnet on Julia 1.10.10 (c8be17dcfd*) started at 2026-02-02T19:52:08.560 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.10` Set-up completed after 5.39s ################################################################################ # Installation # Installing MatrixLMnet... Resolving package versions... Installed Crayons ───────────────────── v4.1.1 Installed IrrationalConstants ───────── v0.2.6 Installed Rmath ─────────────────────── v0.9.0 Installed HypergeometricFunctions ───── v0.3.28 Installed StatsFuns ─────────────────── v1.5.2 Installed Preferences ───────────────── v1.5.1 Installed PrettyTables ──────────────── v3.1.2 Installed PtrArrays ─────────────────── v1.3.0 Installed SentinelArrays ────────────── v1.4.9 Installed TableTraits ───────────────── v1.0.1 Installed SpecialFunctions ──────────── v2.6.1 Installed IterTools ─────────────────── v1.10.0 Installed MatrixLM ──────────────────── v0.2.3 Installed Tables ────────────────────── v1.12.1 Installed DataAPI ───────────────────── v1.16.0 Installed PooledArrays ──────────────── v1.4.3 Installed InlineStrings ─────────────── v1.4.5 Installed DataValueInterfaces ───────── v1.0.0 Installed JLLWrappers ───────────────── v1.7.1 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed OrderedCollections ────────── v1.8.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed PrecompileTools ───────────── v1.2.1 Installed InvertedIndices ───────────── v1.3.1 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed DataStructures ────────────── v0.19.3 Installed Reexport ──────────────────── v1.2.2 Installed StatsModels ───────────────── v0.7.8 Installed MLBase ────────────────────── v0.9.2 Installed LogExpFunctions ───────────── v0.3.29 Installed DataFrames ────────────────── v1.8.1 Installed StatsAPI ──────────────────── v1.8.0 Installed ShiftedArrays ─────────────── v2.0.0 Installed MatrixLMnet ───────────────── v1.1.1 Installed AliasTables ───────────────── v1.1.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Compat ────────────────────── v4.18.1 Installed Missings ──────────────────── v1.2.0 Installed StringManipulation ────────── v0.4.2 Installed SortingAlgorithms ─────────── v1.2.2 Installed DocStringExtensions ───────── v0.9.5 Installed StatsBase ─────────────────── v0.34.10 Updating `~/.julia/environments/v1.10/Project.toml` [436227dc] + MatrixLMnet v1.1.1 Updating `~/.julia/environments/v1.10/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [34da2185] + Compat v4.18.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [ffbed154] + DocStringExtensions v0.9.5 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [f0e99cf1] + MLBase v0.9.2 [37290134] + MatrixLM v0.2.3 [436227dc] + MatrixLMnet v1.1.1 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [43287f4e] + PtrArrays v1.3.0 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [91c51154] + SentinelArrays v1.4.9 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.8 [892a3eda] + StringManipulation v0.4.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [d6f4376e] + Markdown [a63ad114] + Mmap [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [1a1011a3] + SharedArrays [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.23+5 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 11.35s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 1241.8 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds Precompiling package dependencies... Precompiling packages... 1343.5 ms ✓ SentinelArrays 793.6 ms ✓ Compat 847.0 ms ✓ OrderedCollections 644.8 ms ✓ DelimitedFiles 1385.1 ms ✓ FillArrays 514.5 ms ✓ DataValueInterfaces 591.0 ms ✓ LaTeXStrings 614.1 ms ✓ StableRNGs 622.0 ms ✓ InvertedIndices 558.4 ms ✓ Reexport 880.0 ms ✓ DocStringExtensions 970.6 ms ✓ InlineStrings 1680.9 ms ✓ IrrationalConstants 529.5 ms ✓ IteratorInterfaceExtensions 636.6 ms ✓ DataAPI 610.2 ms ✓ StatsAPI 671.7 ms ✓ CompilerSupportLibraries_jll 1486.6 ms ✓ Crayons 877.6 ms ✓ IterTools 556.9 ms ✓ PtrArrays 807.7 ms ✓ Preferences 727.6 ms ✓ ShiftedArrays 1010.8 ms ✓ SuiteSparse 1278.1 ms ✓ Statistics 615.3 ms ✓ Compat → CompatLinearAlgebraExt 2731.5 ms ✓ DataStructures 721.6 ms ✓ Helium 1221.2 ms ✓ FillArrays → FillArraysSparseArraysExt 1023.3 ms ✓ LogExpFunctions 565.5 ms ✓ TableTraits 744.8 ms ✓ Missings 798.2 ms ✓ PooledArrays 733.4 ms ✓ AliasTables 652.7 ms ✓ PrecompileTools 756.4 ms ✓ JLLWrappers 1500.3 ms ✓ PDMats 774.6 ms ✓ SortingAlgorithms 1518.6 ms ✓ QuadGK 1219.4 ms ✓ FillArrays → FillArraysStatisticsExt 1283.2 ms ✓ Tables 2222.8 ms ✓ StringManipulation 788.9 ms ✓ Rmath_jll 811.1 ms ✓ OpenSpecFun_jll 1130.6 ms ✓ FillArrays → FillArraysPDMatsExt 3285.4 ms ✓ StatsBase 26043.1 ms ✓ PrettyTables 1184.0 ms ✓ Rmath 4754.9 ms ✓ SpecialFunctions 2021.9 ms ✓ MLBase 1305.9 ms ✓ PDMats → StatsBaseExt 52637.9 ms ✓ DataFrames 1522.7 ms ✓ HypergeometricFunctions 2254.1 ms ✓ StatsFuns 2490.8 ms ✓ StatsModels 7503.6 ms ✓ Distributions 4538.8 ms ✓ MatrixLM 2433.8 ms ✓ Distributions → DistributionsTestExt 4881.1 ms ✓ MatrixLMnet 58 dependencies successfully precompiled in 159 seconds. 6 already precompiled. Precompilation completed after 174.57s ################################################################################ # Testing # Testing MatrixLMnet Status `/tmp/jl_rEy0FH/Project.toml` [a93c6f00] DataFrames v1.8.1 [31c24e10] Distributions v0.25.123 [3f79f04f] Helium v0.2.1 [f0e99cf1] MLBase v0.9.2 [37290134] MatrixLM v0.2.3 [436227dc] MatrixLMnet v1.1.1 [189a3867] Reexport v1.2.2 [860ef19b] StableRNGs v1.0.4 [8ba89e20] Distributed [37e2e46d] LinearAlgebra [9a3f8284] Random [10745b16] Statistics v1.10.0 [8dfed614] Test Status `/tmp/jl_rEy0FH/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [34da2185] Compat v4.18.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [1a297f60] FillArrays v1.16.0 [3f79f04f] Helium v0.2.1 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [f0e99cf1] MLBase v0.9.2 [37290134] MatrixLM v0.2.3 [436227dc] MatrixLMnet v1.1.1 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [2dfb63ee] PooledArrays v1.4.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [91c51154] SentinelArrays v1.4.9 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.4 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.8 [892a3eda] StringManipulation v0.4.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [8ba89e20] Distributed [9fa8497b] Future [b77e0a4c] InteractiveUtils [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [1a1011a3] SharedArrays [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [4536629a] OpenBLAS_jll v0.3.23+5 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.2.1+1 [8e850b90] libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Lasso vs Elastic Net when α=1 test 1 - ista: Test Passed Lasso vs Elastic Net when α=1 test 2 - fista: Test Passed Lasso vs Elastic Net when α=1 test 3 - fista-bt: Test Passed Lasso vs Elastic Net when α=1 test 4 - admm: Test Passed Lasso vs Elastic Net when α=1 test 5 - cd: Test Passed Test that original data remains unchanged test 6: Test Passed Tests mlmnet finished! CV Lasso vs Elastic Net when α=1 test 1 - ista: Test Passed CV Lasso vs Elastic Net when α=1 test 2 - fista: Test Passed CV Lasso vs Elastic Net when α=1 test 3 - fista-bt: Test Passed CV Lasso vs Elastic Net when α=1 test 4 - admm: Test Passed MatrixLMnet: Test Failed at /home/pkgeval/.julia/packages/MatrixLMnet/2uUv8/test/mlmnetCvTests.jl:157 Expression: ≈(smmr_Net1.AvgMSE, smmr_cd[:, 1]; atol = tolVersion) && (≈(smmr_Net1.AvgPropZero, smmr_cd[:, 2], atol = tolVersion) && (≈(smmr_Net2.AvgMSE, smmr_cd[:, 1]; atol = tolVersion) && ≈(smmr_Net2.AvgPropZero, smmr_cd[:, 2]; atol = tolVersion))) Stacktrace: [1] top-level scope @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:673 [2] include(fname::String) @ Base.MainInclude ./client.jl:487 [3] macro expansion @ ~/.julia/packages/MatrixLMnet/2uUv8/test/runtests.jl:10 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1582 [inlined] [5] top-level scope @ ~/.julia/packages/MatrixLMnet/2uUv8/test/runtests.jl:9 [6] include(fname::String) @ Base.MainInclude ./client.jl:487 [7] top-level scope @ none:6 [8] eval @ ./boot.jl:385 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:289 [10] _start() @ Base ./client.jl:550 CV Lasso vs Elastic Net when α=1 test 5 - cd: Test Failed at /home/pkgeval/.julia/packages/MatrixLMnet/2uUv8/test/mlmnetCvTests.jl:157 Expression: ≈(smmr_Net1.AvgMSE, smmr_cd[:, 1]; atol = tolVersion) && (≈(smmr_Net1.AvgPropZero, smmr_cd[:, 2], atol = tolVersion) && (≈(smmr_Net2.AvgMSE, smmr_cd[:, 1]; atol = tolVersion) && ≈(smmr_Net2.AvgPropZero, smmr_cd[:, 2]; atol = tolVersion))) Tests mlmnet_cv finished! Summary cross-validation test 1 - ista: Test Passed Summary cross-validation test 2 - fista: Test Passed Summary cross-validation test 3 - fista_bt: Test Passed Summary cross-validation test 4 - admm: Test Passed Summary cross-validation test 5 - cd: Test Passed BIC validation test 1:Test Passed Criterion: 26.619610366421647 Number of iterations: 12 Criterion: 18.625904534364828 Number of iterations: 9 Criterion: 13.744251808995 Number of iterations: 10 Adding X intercept to newPredictors. Adding Z intercept to newPredictors. Criterion: 133.98533893330728 Number of iterations: 16 Criterion: 77.64118888834459 Number of iterations: 14 Criterion: 50.59846909236401 Number of iterations: 19 Removing X intercept from newPredictors. Removing Z intercept from newPredictors. Backtransform test α=0 and λ=0 test 3-a: Test Passed Backtransform test α=0 and λ=0 test 3-b: Test Passed Backtransform test α=0 and λ=0 test 3-c: Test Passed Backtransform test α=0 and λ=0 test 3-d: Test Passed Tests utilities finished! Test Summary: | Pass Fail Total Time MatrixLMnet | 35 1 36 1m55.5s coef and predict | 2 2 0.6s With Intercept | 4 4 2.6s Testing minimize_rows function | 6 6 0.1s ERROR: LoadError: Some tests did not pass: 35 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MatrixLMnet/2uUv8/test/runtests.jl:7 Testing failed after 128.08s ERROR: LoadError: Package MatrixLMnet errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 328.02s: package has test failures