Package evaluation to test LaguerreVoronoi on Julia 1.10.10 (c8be17dcfd*) started at 2026-02-02T20:43:15.059 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.10` Set-up completed after 5.25s ################################################################################ # Installation # Installing LaguerreVoronoi... Resolving package versions... Installed Conda ── v1.10.3 Installed PyCall ─ v1.96.4 Updating `~/.julia/environments/v1.10/Project.toml` [e2403620] + LaguerreVoronoi v0.1.5 Updating `~/.julia/environments/v1.10/Manifest.toml` [6e4b80f9] + BenchmarkTools v1.6.3 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [8f4d0f93] + Conda v1.10.3 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [411431e0] + Extents v0.1.6 [f6369f11] + ForwardDiff v1.3.2 [14197337] + GenericLinearAlgebra v0.3.19 [68eda718] + GeoFormatTypes v0.4.5 ⌃ [cf35fbd7] + GeoInterface v1.4.1 ⌅ [5c1252a2] + GeometryBasics v0.4.11 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.4.0 [4076af6c] + JuMP v1.29.4 [e2403620] + LaguerreVoronoi v0.1.5 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [b8f27783] + MathOptInterface v1.49.0 [d8a4904e] + MutableArithmetics v1.6.7 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 ⌅ [67491407] + Polyhedra v0.7.8 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [438e738f] + PyCall v1.96.4 [a8468747] + QHull v0.2.6 [3cdcf5f2] + RecipesBase v1.3.4 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [82ae8749] + StatsAPI v1.8.0 ⌅ [09ab397b] + StructArrays v0.6.21 [ec057cc2] + StructUtils v2.6.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [81def892] + VersionParsing v1.3.0 [6e34b625] + Bzip2_jll v1.0.9+0 [5ae413db] + EarCut_jll v2.2.4+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [0dad84c5] + ArgTools v1.1.1 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching [b77e0a4c] + InteractiveUtils [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.10.0 [de0858da] + Printf [9abbd945] + Profile [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.4.0+0 [e37daf67] + LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.23+5 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log` Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Installation completed after 72.55s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 1789.1 ms ✓ Conda 11843.8 ms ✓ PyCall 116232.4 ms ✓ QHull ✗ LaguerreVoronoi 3 dependencies successfully precompiled in 168 seconds. 66 already precompiled. ERROR: LoadError: The following 1 direct dependency failed to precompile: LaguerreVoronoi Failed to precompile LaguerreVoronoi [e2403620-b030-4fa5-8994-0cb25fd74009] to "/home/pkgeval/.julia/compiled/v1.10/LaguerreVoronoi/jl_WlziFt". [ Info: Installing scipy.spatial via the Conda scipy package... [ Info: Running `conda install -q -y scipy` in root environment Channels: - conda-forge Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64 added / updated specs: - scipy The following packages will be downloaded: package | build ---------------------------|----------------- scipy-1.17.0 | py312h54fa4ab_1 16.1 MB conda-forge ------------------------------------------------------------ Total: 16.1 MB The following NEW packages will be INSTALLED: scipy conda-forge/linux-64::scipy-1.17.0-py312h54fa4ab_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done ERROR: LoadError: InitError: PyError (PyImport_ImportModule The Python package scipy.spatial could not be imported by pyimport. Usually this means that you did not install scipy.spatial in the Python version being used by PyCall. PyCall is currently configured to use the Julia-specific Python distribution installed by the Conda.jl package. To install the scipy.spatial module, you can use `pyimport_conda("scipy.spatial", PKG)`, where PKG is the Anaconda package that contains the module scipy.spatial, or alternatively you can use the Conda package directly (via `using Conda` followed by `Conda.add` etcetera). Alternatively, if you want to use a different Python distribution on your system, such as a system-wide Python (as opposed to the Julia-specific Python), you can re-configure PyCall with that Python. As explained in the PyCall documentation, set ENV["PYTHON"] to the path/name of the python executable you want to use, run Pkg.build("PyCall"), and re-launch Julia. ) ImportError("/opt/julia/bin/../lib/julia/libstdc++.so.6: version `CXXABI_1.3.15' not found (required by /home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/_distance_pybind.cpython-312-x86_64-linux-gnu.so)") File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/__init__.py", line 117, in from ._geometric_slerp import geometric_slerp File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/_geometric_slerp.py", line 7, in from scipy.spatial.distance import euclidean File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/distance.py", line 117, in from . import _hausdorff, _distance_pybind, _distance_wrap Stacktrace: [1] pyimport(name::String) @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:558 [2] pyimport_conda(modulename::String, condapkg::String, channel::String) @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:722 [3] pyimport_conda @ ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:715 [inlined] [4] __init__() @ QHull ~/.julia/packages/QHull/omD8x/src/QHull.jl:16 [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1196 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1184 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}) @ Base ./loading.jl:1129 [8] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128) @ Base ./loading.jl:1654 [9] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2011 [10] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1885 [11] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [12] invoke_in_world @ ./essentials.jl:923 [inlined] [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1876 [14] macro expansion @ ./loading.jl:1863 [inlined] [15] macro expansion @ ./lock.jl:270 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1826 [17] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [18] invoke_in_world @ ./essentials.jl:923 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:1819 [20] include @ ./Base.jl:495 [inlined] [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2295 [22] top-level scope @ stdin:4 during initialization of module QHull in expression starting at /home/pkgeval/.julia/packages/LaguerreVoronoi/btK2O/src/LaguerreVoronoi.jl:1 in expression starting at stdin:4 caused by: PyError (PyImport_ImportModule The Python package scipy.spatial could not be imported by pyimport. Usually this means that you did not install scipy.spatial in the Python version being used by PyCall. PyCall is currently configured to use the Julia-specific Python distribution installed by the Conda.jl package. To install the scipy.spatial module, you can use `pyimport_conda("scipy.spatial", PKG)`, where PKG is the Anaconda package that contains the module scipy.spatial, or alternatively you can use the Conda package directly (via `using Conda` followed by `Conda.add` etcetera). Alternatively, if you want to use a different Python distribution on your system, such as a system-wide Python (as opposed to the Julia-specific Python), you can re-configure PyCall with that Python. As explained in the PyCall documentation, set ENV["PYTHON"] to the path/name of the python executable you want to use, run Pkg.build("PyCall"), and re-launch Julia. ) ModuleNotFoundError("No module named 'scipy'") Stacktrace: [1] pyimport(name::String) @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:558 [2] pyimport_conda(modulename::String, condapkg::String, channel::String) @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:716 [3] pyimport_conda @ ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:715 [inlined] [4] __init__() @ QHull ~/.julia/packages/QHull/omD8x/src/QHull.jl:16 [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1196 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1184 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}) @ Base ./loading.jl:1129 [8] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128) @ Base ./loading.jl:1654 [9] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2011 [10] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1885 [11] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [12] invoke_in_world @ ./essentials.jl:923 [inlined] [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1876 [14] macro expansion @ ./loading.jl:1863 [inlined] [15] macro expansion @ ./lock.jl:270 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1826 [17] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [18] invoke_in_world @ ./essentials.jl:923 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:1819 [20] include @ ./Base.jl:495 [inlined] [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2295 [22] top-level scope @ stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 177.48s ################################################################################ # Testing # Testing LaguerreVoronoi Status `/tmp/jl_zqfWpT/Project.toml` [b4f34e82] Distances v0.10.12 [e2403620] LaguerreVoronoi v0.1.5 ⌅ [67491407] Polyhedra v0.7.8 ⌅ [aea7be01] PrecompileTools v1.2.1 [a8468747] QHull v0.2.6 [3cdcf5f2] RecipesBase v1.3.4 [37e2e46d] LinearAlgebra [9a3f8284] Random [8dfed614] Test Status `/tmp/jl_zqfWpT/Manifest.toml` [6e4b80f9] BenchmarkTools v1.6.3 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [8f4d0f93] Conda v1.10.3 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [411431e0] Extents v0.1.6 [f6369f11] ForwardDiff v1.3.2 [14197337] GenericLinearAlgebra v0.3.19 [68eda718] GeoFormatTypes v0.4.5 ⌃ [cf35fbd7] GeoInterface v1.4.1 ⌅ [5c1252a2] GeometryBasics v0.4.11 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 [4076af6c] JuMP v1.29.4 [e2403620] LaguerreVoronoi v0.1.5 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [b8f27783] MathOptInterface v1.49.0 [d8a4904e] MutableArithmetics v1.6.7 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 ⌅ [67491407] Polyhedra v0.7.8 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.1 [438e738f] PyCall v1.96.4 [a8468747] QHull v0.2.6 [3cdcf5f2] RecipesBase v1.3.4 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [82ae8749] StatsAPI v1.8.0 ⌅ [09ab397b] StructArrays v0.6.21 [ec057cc2] StructUtils v2.6.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [81def892] VersionParsing v1.3.0 [6e34b625] Bzip2_jll v1.0.9+0 [5ae413db] EarCut_jll v2.2.4+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [b77e0a4c] InteractiveUtils [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [9abbd945] Profile [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.23+5 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... [ Info: Installing scipy.spatial via the Conda scipy package... [ Info: Running `conda install -q -y scipy` in root environment Channels: - conda-forge Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done # All requested packages already installed. ERROR: LoadError: InitError: PyError (PyImport_ImportModule The Python package scipy.spatial could not be imported by pyimport. Usually this means that you did not install scipy.spatial in the Python version being used by PyCall. PyCall is currently configured to use the Julia-specific Python distribution installed by the Conda.jl package. To install the scipy.spatial module, you can use `pyimport_conda("scipy.spatial", PKG)`, where PKG is the Anaconda package that contains the module scipy.spatial, or alternatively you can use the Conda package directly (via `using Conda` followed by `Conda.add` etcetera). Alternatively, if you want to use a different Python distribution on your system, such as a system-wide Python (as opposed to the Julia-specific Python), you can re-configure PyCall with that Python. As explained in the PyCall documentation, set ENV["PYTHON"] to the path/name of the python executable you want to use, run Pkg.build("PyCall"), and re-launch Julia. ) ImportError("/opt/julia/bin/../lib/julia/libstdc++.so.6: version `CXXABI_1.3.15' not found (required by /home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/_distance_pybind.cpython-312-x86_64-linux-gnu.so)") File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/__init__.py", line 117, in from ._geometric_slerp import geometric_slerp File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/_geometric_slerp.py", line 7, in from scipy.spatial.distance import euclidean File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/distance.py", line 117, in from . import _hausdorff, _distance_pybind, _distance_wrap Stacktrace: [1] pyimport(name::String) @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:558 [2] pyimport_conda(modulename::String, condapkg::String, channel::String) @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:722 [3] pyimport_conda @ ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:715 [inlined] [4] __init__() @ QHull ~/.julia/packages/QHull/omD8x/src/QHull.jl:16 [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1196 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1184 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}) @ Base ./loading.jl:1129 [8] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128) @ Base ./loading.jl:1654 [9] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2011 [10] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1885 [11] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [12] invoke_in_world @ ./essentials.jl:923 [inlined] [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1876 [14] macro expansion @ ./loading.jl:1863 [inlined] [15] macro expansion @ ./lock.jl:270 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1826 [17] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [18] invoke_in_world @ ./essentials.jl:923 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:1819 [20] include @ ./Base.jl:495 [inlined] [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2295 [22] top-level scope @ stdin:4 during initialization of module QHull in expression starting at /home/pkgeval/.julia/packages/LaguerreVoronoi/btK2O/src/LaguerreVoronoi.jl:1 in expression starting at stdin:4 caused by: PyError (PyImport_ImportModule The Python package scipy.spatial could not be imported by pyimport. Usually this means that you did not install scipy.spatial in the Python version being used by PyCall. PyCall is currently configured to use the Julia-specific Python distribution installed by the Conda.jl package. To install the scipy.spatial module, you can use `pyimport_conda("scipy.spatial", PKG)`, where PKG is the Anaconda package that contains the module scipy.spatial, or alternatively you can use the Conda package directly (via `using Conda` followed by `Conda.add` etcetera). Alternatively, if you want to use a different Python distribution on your system, such as a system-wide Python (as opposed to the Julia-specific Python), you can re-configure PyCall with that Python. As explained in the PyCall documentation, set ENV["PYTHON"] to the path/name of the python executable you want to use, run Pkg.build("PyCall"), and re-launch Julia. ) ImportError("/opt/julia/bin/../lib/julia/libstdc++.so.6: version `CXXABI_1.3.15' not found (required by /home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/_distance_pybind.cpython-312-x86_64-linux-gnu.so)") File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/__init__.py", line 117, in from ._geometric_slerp import geometric_slerp File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/_geometric_slerp.py", line 7, in from scipy.spatial.distance import euclidean File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/scipy/spatial/distance.py", line 117, in from . import _hausdorff, _distance_pybind, _distance_wrap Stacktrace: [1] pyimport(name::String) @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:558 [2] pyimport_conda(modulename::String, condapkg::String, channel::String) @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:716 [3] pyimport_conda @ ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:715 [inlined] [4] __init__() @ QHull ~/.julia/packages/QHull/omD8x/src/QHull.jl:16 [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1196 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1184 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}) @ Base ./loading.jl:1129 [8] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128) @ Base ./loading.jl:1654 [9] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2011 [10] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1885 [11] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [12] invoke_in_world @ ./essentials.jl:923 [inlined] [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1876 [14] macro expansion @ ./loading.jl:1863 [inlined] [15] macro expansion @ ./lock.jl:270 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1826 [17] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [18] invoke_in_world @ ./essentials.jl:923 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:1819 [20] include @ ./Base.jl:495 [inlined] [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2295 [22] top-level scope @ stdin:4 ERROR: LoadError: Failed to precompile LaguerreVoronoi [e2403620-b030-4fa5-8994-0cb25fd74009] to "/home/pkgeval/.julia/compiled/v1.10/LaguerreVoronoi/jl_WPl0CK". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2542 [3] compilecache @ ./loading.jl:2414 [inlined] [4] (::Base.var"#971#972"{Base.PkgId})() @ Base ./loading.jl:2047 [5] mkpidlock(f::Base.var"#971#972"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ ./essentials.jl:894 [inlined] [9] invokelatest @ ./essentials.jl:889 [inlined] [10] maybe_cachefile_lock(f::Base.var"#971#972"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3057 [11] maybe_cachefile_lock @ ./loading.jl:3054 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2043 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1885 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1876 [17] macro expansion @ ./loading.jl:1863 [inlined] [18] macro expansion @ ./lock.jl:270 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1826 [20] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [21] invoke_in_world @ ./essentials.jl:923 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1819 [23] include(fname::String) @ Base.MainInclude ./client.jl:487 [24] top-level scope @ none:6 in expression starting at /home/pkgeval/.julia/packages/LaguerreVoronoi/btK2O/test/runtests.jl:3 Testing failed after 44.19s ERROR: LoadError: Package LaguerreVoronoi errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 328.27s: package fails to precompile