Package evaluation to test GeophysicalModelGenerator on Julia 1.10.10 (c8be17dcfd*) started at 2026-02-03T05:02:19.738 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.10` Set-up completed after 5.18s ################################################################################ # Installation # Installing GeophysicalModelGenerator... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [3700c31b] + GeophysicalModelGenerator v0.7.16 Updating `~/.julia/environments/v1.10/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [7b0aa2c9] + BibTeX v0.1.0 [fa961155] + CEnum v0.5.0 [179af706] + CFTime v0.2.5 [d360d2e6] + ChainRulesCore v1.26.0 [0b6fb165] + ChunkCodecCore v1.0.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [1fbeeb36] + CommonDataModel v0.4.2 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [150eb455] + CoordinateTransformations v0.6.4 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [3c3547ce] + DiskArrays v0.4.19 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [411431e0] + Extents v0.1.6 [c87230d0] + FFMPEG v0.4.5 [5789e2e9] + FileIO v1.18.0 [1a297f60] + FillArrays v1.16.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.3.2 [e018b62d] + GeoParams v0.7.9 [0ef565a4] + Geodesy v1.2.0 [5c1252a2] + GeometryBasics v0.5.10 [3700c31b] + GeophysicalModelGenerator v0.7.16 ⌅ [c27321d9] + Glob v1.3.1 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [7d512f48] + InternedStrings v0.7.0 [a98d9a8b] + Interpolations v0.16.2 [8197267c] + IntervalSets v0.7.13 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [033835bb] + JLD2 v0.6.3 [692b3bcd] + JLLWrappers v1.7.1 [b835a17e] + JpegTurbo v0.1.6 [49dc5b4e] + KernelDensitySJ v0.2.2 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [9c8b4983] + LightXML v0.9.3 [4345ca2d] + Loess v0.6.5 [2ab3a3ac] + LogExpFunctions v0.3.29 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [dbb5928d] + MappedArrays v0.4.3 [7269a6da] + MeshIO v0.5.3 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [46d2c3a1] + MuladdMacro v0.2.4 [85f8d34a] + NCDatasets v0.14.11 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.26 [f09324ee] + Netpbm v1.1.1 [6fe1bfb0] + OffsetArrays v1.17.0 [52e1d378] + OpenEXR v0.3.3 [bac558e1] + OrderedCollections v1.8.1 [f57f5aa1] + PNGFiles v0.4.4 [5432bcbf] + PaddedViews v0.5.12 [d96e819e] + 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LibGit2_jll v1.6.4+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.23+5 [05823500] + OpenLibm_jll v0.8.5+0 [efcefdf7] + PCRE2_jll v10.42.0+1 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.52.0+1 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 16.79s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... ✗ libgeotiff_jll 13214.8 ms ✓ GridapGmsh ✗ GDAL_jll ✗ GMT_jll 104351.1 ms ✓ GeophysicalModelGenerator → Gmsh_utils 168470.6 ms ✓ GeophysicalModelGenerator → Chmy_utils ✗ GMT ✗ GeophysicalModelGenerator → GMT_utils 3 dependencies successfully precompiled in 355 seconds. 346 already precompiled. 2 dependencies had output during precompilation: ┌ GeophysicalModelGenerator → Gmsh_utils │ ┌ Warning: `Myrs` as a unit is deprecated. Use `Myr` instead. │ └ @ GeoParams.Units ~/.julia/packages/GeoParams/FuV4T/src/Units.jl:21 └ ┌ GeophysicalModelGenerator → Chmy_utils │ ┌ Warning: `Myrs` as a unit is deprecated. Use `Myr` instead. │ └ @ GeoParams.Units ~/.julia/packages/GeoParams/FuV4T/src/Units.jl:21 │ Loading Chmy-GMG tools └ ERROR: LoadError: The following 3 direct dependencies failed to precompile: GMT_utils Failed to precompile GMT_utils [20136216-f3a3-54f4-8003-01a59bbc487c] to "/home/pkgeval/.julia/compiled/v1.10/GMT_utils/jl_in97hF". ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/0e25413977e1aa52abfecdd2bee850e964b8d477/lib/libproj.so" libsqlite3.so.0: cannot open shared object file: No such file or directory Stacktrace: [1] dlopen(s::String, flags::UInt32; throw_error::Bool) @ Base.Libc.Libdl ./libdl.jl:117 [2] dlopen(s::String, flags::UInt32) @ Base.Libc.Libdl ./libdl.jl:116 [3] macro expansion @ ~/.julia/packages/JLLWrappers/m2Pjh/src/products/library_generators.jl:63 [inlined] [4] __init__() @ PROJ_jll ~/.julia/packages/PROJ_jll/lq5nt/src/wrappers/x86_64-linux-gnu-cxx11.jl:50 [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1196 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1184 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}) @ Base ./loading.jl:1129 [8] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128) @ Base ./loading.jl:1654 [9] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2011 [10] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1885 [11] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [12] invoke_in_world @ ./essentials.jl:923 [inlined] [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1876 [14] macro expansion @ ./loading.jl:1863 [inlined] [15] macro expansion @ ./lock.jl:270 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1826 [17] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [18] invoke_in_world @ ./essentials.jl:923 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:1819 [20] include(mod::Module, _path::String) @ Base ./Base.jl:495 [21] top-level scope @ ~/.julia/packages/JLLWrappers/m2Pjh/src/toplevel_generators.jl:199 [22] include @ ./Base.jl:495 [inlined] [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2295 [24] top-level scope @ stdin:4 during initialization of module PROJ_jll in expression starting at /home/pkgeval/.julia/packages/GMT_jll/NtNTV/src/wrappers/x86_64-linux-gnu.jl:6 in expression starting at /home/pkgeval/.julia/packages/GMT_jll/NtNTV/src/GMT_jll.jl:2 in expression starting at stdin:4 ERROR: LoadError: Failed to precompile GMT_jll [b68b8c3f-ed99-5bef-9675-4739d9426b26] to "/home/pkgeval/.julia/compiled/v1.10/GMT_jll/jl_0IYVNY". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2542 [3] compilecache @ ./loading.jl:2414 [inlined] [4] (::Base.var"#971#972"{Base.PkgId})() @ Base ./loading.jl:2047 [5] mkpidlock(f::Base.var"#971#972"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ ./essentials.jl:894 [inlined] [9] invokelatest @ ./essentials.jl:889 [inlined] [10] maybe_cachefile_lock(f::Base.var"#971#972"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3057 [11] maybe_cachefile_lock @ ./loading.jl:3054 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2043 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1885 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1876 [17] macro expansion @ ./loading.jl:1863 [inlined] [18] macro expansion @ ./lock.jl:270 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1826 [20] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [21] invoke_in_world @ ./essentials.jl:923 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1819 [23] top-level scope @ ~/.julia/packages/GMT/YUDJi/src/GMT.jl:47 [24] include @ ./Base.jl:495 [inlined] [25] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2295 [26] top-level scope @ stdin:4 in expression starting at /home/pkgeval/.julia/packages/GMT/YUDJi/src/GMT.jl:1 in expression starting at stdin:4 ERROR: LoadError: Failed to precompile GMT [5752ebe1-31b9-557e-87aa-f909b540aa54] to "/home/pkgeval/.julia/compiled/v1.10/GMT/jl_T9Pj2N". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2542 [3] compilecache @ ./loading.jl:2414 [inlined] [4] (::Base.var"#971#972"{Base.PkgId})() @ Base ./loading.jl:2047 [5] mkpidlock(f::Base.var"#971#972"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ ./essentials.jl:894 [inlined] [9] invokelatest @ ./essentials.jl:889 [inlined] [10] maybe_cachefile_lock(f::Base.var"#971#972"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3057 [11] maybe_cachefile_lock @ ./loading.jl:3054 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2043 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1885 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1876 [17] macro expansion @ ./loading.jl:1863 [inlined] [18] macro expansion @ ./lock.jl:270 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1826 [20] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [21] invoke_in_world @ ./essentials.jl:923 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1819 [23] top-level scope @ ~/.julia/packages/GeophysicalModelGenerator/8XOi2/ext/GMT_utils.jl:10 [24] include @ ./Base.jl:495 [inlined] [25] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2295 [26] top-level scope @ stdin:4 in expression starting at /home/pkgeval/.julia/packages/GeophysicalModelGenerator/8XOi2/ext/GMT_utils.jl:2 in expression starting at stdin:4 GDAL_jll Failed to precompile GDAL_jll [a7073274-a066-55f0-b90d-d619367d196c] to "/home/pkgeval/.julia/compiled/v1.10/GDAL_jll/jl_ZbuAWL". ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/0e25413977e1aa52abfecdd2bee850e964b8d477/lib/libproj.so" libsqlite3.so.0: cannot open shared object file: No such file or directory Stacktrace: [1] dlopen(s::String, flags::UInt32; throw_error::Bool) @ Base.Libc.Libdl ./libdl.jl:117 [2] dlopen(s::String, flags::UInt32) @ Base.Libc.Libdl ./libdl.jl:116 [3] macro expansion @ ~/.julia/packages/JLLWrappers/m2Pjh/src/products/library_generators.jl:63 [inlined] [4] __init__() @ PROJ_jll ~/.julia/packages/PROJ_jll/lq5nt/src/wrappers/x86_64-linux-gnu-cxx11.jl:50 [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1196 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1184 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}) @ Base ./loading.jl:1129 [8] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128) @ Base ./loading.jl:1654 [9] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2011 [10] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1885 [11] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [12] invoke_in_world @ ./essentials.jl:923 [inlined] [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1876 [14] macro expansion @ ./loading.jl:1863 [inlined] [15] macro expansion @ ./lock.jl:270 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1826 [17] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [18] invoke_in_world @ ./essentials.jl:923 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:1819 [20] include(mod::Module, _path::String) @ Base ./Base.jl:495 [21] top-level scope @ ~/.julia/packages/JLLWrappers/m2Pjh/src/toplevel_generators.jl:199 [22] include @ ./Base.jl:495 [inlined] [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2295 [24] top-level scope @ stdin:4 during initialization of module PROJ_jll in expression starting at /home/pkgeval/.julia/packages/GDAL_jll/gGDrA/src/wrappers/x86_64-linux-gnu-cxx11.jl:18 in expression starting at /home/pkgeval/.julia/packages/GDAL_jll/gGDrA/src/GDAL_jll.jl:2 in expression starting at stdin:4 GMT Failed to precompile GMT [5752ebe1-31b9-557e-87aa-f909b540aa54] to "/home/pkgeval/.julia/compiled/v1.10/GMT/jl_RPHeKl". ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/0e25413977e1aa52abfecdd2bee850e964b8d477/lib/libproj.so" libsqlite3.so.0: cannot open shared object file: No such file or directory Stacktrace: [1] dlopen(s::String, flags::UInt32; throw_error::Bool) @ Base.Libc.Libdl ./libdl.jl:117 [2] dlopen(s::String, flags::UInt32) @ Base.Libc.Libdl ./libdl.jl:116 [3] macro expansion @ ~/.julia/packages/JLLWrappers/m2Pjh/src/products/library_generators.jl:63 [inlined] [4] __init__() @ PROJ_jll ~/.julia/packages/PROJ_jll/lq5nt/src/wrappers/x86_64-linux-gnu-cxx11.jl:50 [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1196 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1184 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}) @ Base ./loading.jl:1129 [8] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128) @ Base ./loading.jl:1654 [9] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2011 [10] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1885 [11] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [12] invoke_in_world @ ./essentials.jl:923 [inlined] [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1876 [14] macro expansion @ ./loading.jl:1863 [inlined] [15] macro expansion @ ./lock.jl:270 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1826 [17] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [18] invoke_in_world @ ./essentials.jl:923 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:1819 [20] include(mod::Module, _path::String) @ Base ./Base.jl:495 [21] top-level scope @ ~/.julia/packages/JLLWrappers/m2Pjh/src/toplevel_generators.jl:199 [22] include @ ./Base.jl:495 [inlined] [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2295 [24] top-level scope @ stdin:4 during initialization of module PROJ_jll in expression starting at /home/pkgeval/.julia/packages/GMT_jll/NtNTV/src/wrappers/x86_64-linux-gnu.jl:6 in expression starting at /home/pkgeval/.julia/packages/GMT_jll/NtNTV/src/GMT_jll.jl:2 in expression starting at stdin:4 ERROR: LoadError: Failed to precompile GMT_jll [b68b8c3f-ed99-5bef-9675-4739d9426b26] to "/home/pkgeval/.julia/compiled/v1.10/GMT_jll/jl_ndGBXY". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2542 [3] compilecache @ ./loading.jl:2414 [inlined] [4] (::Base.var"#971#972"{Base.PkgId})() @ Base ./loading.jl:2047 [5] mkpidlock(f::Base.var"#971#972"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ ./essentials.jl:894 [inlined] [9] invokelatest @ ./essentials.jl:889 [inlined] [10] maybe_cachefile_lock(f::Base.var"#971#972"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3057 [11] maybe_cachefile_lock @ ./loading.jl:3054 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2043 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1885 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1876 [17] macro expansion @ ./loading.jl:1863 [inlined] [18] macro expansion @ ./lock.jl:270 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1826 [20] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [21] invoke_in_world @ ./essentials.jl:923 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1819 [23] top-level scope @ ~/.julia/packages/GMT/YUDJi/src/GMT.jl:47 [24] include @ ./Base.jl:495 [inlined] [25] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2295 [26] top-level scope @ stdin:4 in expression starting at /home/pkgeval/.julia/packages/GMT/YUDJi/src/GMT.jl:1 in expression starting at stdin:4 in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 389.16s ################################################################################ # Testing # Testing GeophysicalModelGenerator Status `/tmp/jl_x2f7KF/Project.toml` [33a72cf0] Chmy v0.1.25 [5ae59095] Colors v0.13.1 [8bb1440f] DelimitedFiles v1.9.1 [c87230d0] FFMPEG v0.4.5 [5789e2e9] FileIO v1.18.0 ⌃ [5752ebe1] GMT v1.15.1 [e018b62d] GeoParams v0.7.9 [0ef565a4] Geodesy v1.2.0 [5c1252a2] GeometryBasics v0.5.10 [3700c31b] GeophysicalModelGenerator v0.7.16 ⌅ [c27321d9] Glob v1.3.1 [3025c34a] GridapGmsh v0.7.3 [82e4d734] ImageIO v0.6.9 [a98d9a8b] Interpolations v0.16.2 [033835bb] JLD2 v0.6.3 [63c18a36] KernelAbstractions v0.9.39 [9c8b4983] LightXML v0.9.3 [7269a6da] MeshIO v0.5.3 [85f8d34a] NCDatasets v0.14.11 [b8a86587] NearestNeighbors v0.4.26 [d96e819e] Parameters v0.12.3 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.16 [ea906314] WhereTheWaterFlows v0.11.1 [64499a7a] WriteVTK v1.21.2 [a7073274] GDAL_jll v304.1200.100+0 [f43a241f] Downloads v1.6.0 [37e2e46d] LinearAlgebra [de0858da] Printf [10745b16] Statistics v1.10.0 [8dfed614] Test Status `/tmp/jl_x2f7KF/Manifest.toml` [47edcb42] ADTypes v1.21.0 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [4fba245c] ArrayInterface v7.22.0 [4c555306] ArrayLayouts v1.12.2 [a9b6321e] Atomix v1.1.2 [15f4f7f2] AutoHashEquals v2.2.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [fbb218c0] BSON v0.3.9 [7b0aa2c9] BibTeX v0.1.0 [8e7c35d0] BlockArrays v1.9.3 [fa961155] CEnum v0.5.0 [179af706] CFTime v0.2.5 [d360d2e6] ChainRulesCore v1.26.0 [33a72cf0] Chmy v0.1.25 [0b6fb165] ChunkCodecCore v1.0.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [7a955b69] CircularArrays v1.4.0 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.1.0 [1fbeeb36] CommonDataModel v0.4.2 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [150eb455] CoordinateTransformations v0.6.4 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.16 [3c3547ce] DiskArrays v0.4.19 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [411431e0] Extents v0.1.6 [c87230d0] FFMPEG v0.4.5 [7a1cc6ca] FFTW v1.10.0 [442a2c76] FastGaussQuadrature v1.1.0 [5789e2e9] FileIO v1.18.0 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.29.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.3.2 ⌃ [5752ebe1] GMT v1.15.1 [e018b62d] GeoParams v0.7.9 [0ef565a4] Geodesy v1.2.0 [5c1252a2] GeometryBasics v0.5.10 [3700c31b] GeophysicalModelGenerator v0.7.16 ⌅ [c27321d9] Glob v1.3.1 [56d4f2e9] Gridap v0.19.7 [f9701e48] GridapDistributed v0.4.10 [3025c34a] GridapGmsh v0.7.3 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [7d512f48] InternedStrings v0.7.0 [a98d9a8b] Interpolations v0.16.2 [8197267c] IntervalSets v0.7.13 [3587e190] InverseFunctions v0.1.17 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LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.23+5 [05823500] OpenLibm_jll v0.8.5+0 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Extracting GeoData from: test.png └ Corners: lon lat depth └ lower left = (18.0 , 51.0 , -590.0 ) └ lower right = (9.0 , 42.0 , -590.0 ) └ upper left = (18.0 , 51.0 , 0.0 ) └ upper right = (9.0 , 42.0 , 0.0 ) Saved file: Profile_1.vts Extracting GeoData from: test.png └ Corners: lon lat depth └ lower left = (18.0 , 51.0 , -590.0 ) └ lower right = (9.0 , 42.0 , -590.0 ) └ upper left = (18.0 , 51.0 , 0.0 ) └ upper right = (9.0 , 42.0 , 0.0 ) Extracting CartData from: test.png └ Corners: x y z └ lower left = (18.0 , 51.0 , -590.0 ) └ lower right = (9.0 , 42.0 , -590.0 ) └ upper left = (18.0 , 51.0 , 0.0 ) └ upper right = (9.0 , 42.0 , 0.0 ) Extracting UTMData from: test.png UTM Zone 33 Northern Hemisphere └ Corners: E-W (x) | N-S (y) | depth (z) └ lower left = (18.0 , 51.0 , -590.0 ) └ lower right = (9.0 , 42.0 , -590.0 ) └ upper left = (18.0 , 51.0 , 0.0 ) └ upper right = (9.0 , 42.0 , 0.0 ) Extracting GeoData from: test.png └ Corners: lon lat depth └ lower left = (2.0 , 40.0 , -15.0 ) └ lower right = (20.0 , 40.0 , -15.0 ) └ upper left = (0.0 , 51.0 , -15.0 ) └ upper right = (22.0 , 51.0 , -15.0 ) Saved file: MapView_1.vts Extracting CartData from: test.png └ Corners: x y z └ lower left = (2.0 , 40.0 , -15.0 ) └ lower right = (20.0 , 40.0 , -15.0 ) └ upper left = (0.0 , 51.0 , -15.0 ) └ upper right = (22.0 , 51.0 , -15.0 ) Extracting UTMData from: test.png UTM Zone 33 Northern Hemisphere └ Corners: E-W (x) | N-S (y) | depth (z) └ lower left = (2.0 , 40.0 , -15.0 ) └ lower right = (20.0 , 40.0 , -15.0 ) └ upper left = (0.0 , 51.0 , -15.0 ) └ upper right = (22.0 , 51.0 , -15.0 ) ┌ Warning: It appears that the lon array has a wrong ordering └ @ GeophysicalModelGenerator ~/.julia/packages/GeophysicalModelGenerator/8XOi2/src/data_types.jl:175 ┌ Warning: It appears that the lat array has a wrong ordering └ @ GeophysicalModelGenerator ~/.julia/packages/GeophysicalModelGenerator/8XOi2/src/data_types.jl:178 Saved file: test_depth3D.vts Saved file: test2.vts Saved file: test3.vts Saved file: test4.vts Saved file: test5.vts Applying a vector transformation to field: Velocity Saved file: test_Vel.vts Applying a vector transformation to field: Velocity Saved file: test_Color.vts Applying a vector transformation to field: Velocity Saved file: test_Vel_points.vtu Saved file: ./test_files/test_depth3D.vts Applying a vector transformation to field: Velocity Saved file: profile_test.vts Applying a vector transformation to field: Velocity Saved file: profile_test.vts Saved file: LaMEM_ModelSetup.vts Written LaMEM topography file: test_topo.dat Wrote pTatin mesh : md.bin Wrote pTatin field : region_cell.bin Wrote pTatin field : Z_vertex.bin Wrote pTatin field : T_vertex.bin lon start 7.70935776654412 lat start 44.5725371379234 lon end 4.12158203125 lat end 44.5578451815954 ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/0e25413977e1aa52abfecdd2bee850e964b8d477/lib/libproj.so" libsqlite3.so.0: cannot open shared object file: No such file or directory Stacktrace: [1] dlopen(s::String, flags::UInt32; throw_error::Bool) @ Base.Libc.Libdl ./libdl.jl:117 [2] dlopen(s::String, flags::UInt32) @ Base.Libc.Libdl ./libdl.jl:116 [3] macro expansion @ ~/.julia/packages/JLLWrappers/m2Pjh/src/products/library_generators.jl:63 [inlined] [4] __init__() @ PROJ_jll ~/.julia/packages/PROJ_jll/lq5nt/src/wrappers/x86_64-linux-gnu-cxx11.jl:50 [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1196 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1184 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}) @ Base ./loading.jl:1129 [8] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128) @ Base ./loading.jl:1654 [9] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2011 [10] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1885 [11] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [12] invoke_in_world @ ./essentials.jl:923 [inlined] [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1876 [14] macro expansion @ ./loading.jl:1863 [inlined] [15] macro expansion @ ./lock.jl:270 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1826 [17] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [18] invoke_in_world @ ./essentials.jl:923 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:1819 [20] include(mod::Module, _path::String) @ Base ./Base.jl:495 [21] top-level scope @ ~/.julia/packages/JLLWrappers/m2Pjh/src/toplevel_generators.jl:199 [22] include @ ./Base.jl:495 [inlined] [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2295 [24] top-level scope @ stdin:4 during initialization of module PROJ_jll in expression starting at /home/pkgeval/.julia/packages/GMT_jll/NtNTV/src/wrappers/x86_64-linux-gnu.jl:6 in expression starting at /home/pkgeval/.julia/packages/GMT_jll/NtNTV/src/GMT_jll.jl:2 in expression starting at stdin:4 ERROR: LoadError: Failed to precompile GMT_jll [b68b8c3f-ed99-5bef-9675-4739d9426b26] to "/home/pkgeval/.julia/compiled/v1.10/GMT_jll/jl_yoDiDC". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2542 [3] compilecache @ ./loading.jl:2414 [inlined] [4] (::Base.var"#971#972"{Base.PkgId})() @ Base ./loading.jl:2047 [5] mkpidlock(f::Base.var"#971#972"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ ./essentials.jl:894 [inlined] [9] invokelatest @ ./essentials.jl:889 [inlined] [10] maybe_cachefile_lock(f::Base.var"#971#972"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3057 [11] maybe_cachefile_lock @ ./loading.jl:3054 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2043 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1885 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1876 [17] macro expansion @ ./loading.jl:1863 [inlined] [18] macro expansion @ ./lock.jl:270 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1826 [20] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [21] invoke_in_world @ ./essentials.jl:923 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1819 [23] top-level scope @ ~/.julia/packages/GMT/YUDJi/src/GMT.jl:47 [24] include @ ./Base.jl:495 [inlined] [25] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2295 [26] top-level scope @ stdin:4 in expression starting at /home/pkgeval/.julia/packages/GMT/YUDJi/src/GMT.jl:1 in expression starting at stdin:4 GMT integration: Error During Test at /home/pkgeval/.julia/packages/GeophysicalModelGenerator/8XOi2/test/runtests.jl:58 Got exception outside of a @test LoadError: Failed to precompile GMT [5752ebe1-31b9-557e-87aa-f909b540aa54] to "/home/pkgeval/.julia/compiled/v1.10/GMT/jl_StGYOF". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2542 [3] compilecache @ ./loading.jl:2414 [inlined] [4] (::Base.var"#971#972"{Base.PkgId})() @ Base ./loading.jl:2047 [5] mkpidlock(f::Base.var"#971#972"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ ./essentials.jl:894 [inlined] [9] invokelatest @ ./essentials.jl:889 [inlined] [10] maybe_cachefile_lock(f::Base.var"#971#972"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3057 [11] maybe_cachefile_lock @ ./loading.jl:3054 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2043 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1885 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1876 [17] macro expansion @ ./loading.jl:1863 [inlined] [18] macro expansion @ ./lock.jl:270 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1826 [20] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [21] invoke_in_world @ ./essentials.jl:923 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1819 [23] include(fname::String) @ Base.MainInclude ./client.jl:487 [24] macro expansion @ ~/.julia/packages/GeophysicalModelGenerator/8XOi2/test/runtests.jl:59 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1582 [inlined] [26] macro expansion @ ~/.julia/packages/GeophysicalModelGenerator/8XOi2/test/runtests.jl:59 [inlined] [27] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1582 [inlined] [28] top-level scope @ ~/.julia/packages/GeophysicalModelGenerator/8XOi2/test/runtests.jl:6 [29] include(fname::String) @ Base.MainInclude ./client.jl:487 [30] top-level scope @ none:6 in expression starting at /home/pkgeval/.julia/packages/GeophysicalModelGenerator/8XOi2/test/test_GMT.jl:2 Info : Reading 'test_files/subduction_ptatin.msh'... Info : 160 entities Info : 49 nodes Info : 199 elements Info : Done reading 'test_files/subduction_ptatin.msh' created movie: /home/pkgeval/.julia/packages/GeophysicalModelGenerator/8XOi2/test/test_animation.mp4 created movie: /home/pkgeval/.julia/packages/GeophysicalModelGenerator/8XOi2/test/test_files/test_animation.mp4 created movie: /home/pkgeval/.julia/packages/GeophysicalModelGenerator/8XOi2/test/test_files/test_anim2.mp4 created movie: /home/pkgeval/.julia/packages/GeophysicalModelGenerator/8XOi2/test/test_files/test_anim3.mov Saved file: Plate.vts ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/0e25413977e1aa52abfecdd2bee850e964b8d477/lib/libproj.so" libsqlite3.so.0: cannot open shared object file: No such file or directory Stacktrace: [1] dlopen(s::String, flags::UInt32; throw_error::Bool) @ Base.Libc.Libdl ./libdl.jl:117 [2] dlopen(s::String, flags::UInt32) @ Base.Libc.Libdl ./libdl.jl:116 [3] macro expansion @ ~/.julia/packages/JLLWrappers/m2Pjh/src/products/library_generators.jl:63 [inlined] [4] __init__() @ PROJ_jll ~/.julia/packages/PROJ_jll/lq5nt/src/wrappers/x86_64-linux-gnu-cxx11.jl:50 [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1196 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1184 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}) @ Base ./loading.jl:1129 [8] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128) @ Base ./loading.jl:1654 [9] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2011 [10] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1885 [11] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [12] invoke_in_world @ ./essentials.jl:923 [inlined] [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1876 [14] macro expansion @ ./loading.jl:1863 [inlined] [15] macro expansion @ ./lock.jl:270 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1826 [17] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [18] invoke_in_world @ ./essentials.jl:923 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:1819 [20] include(mod::Module, _path::String) @ Base ./Base.jl:495 [21] top-level scope @ ~/.julia/packages/JLLWrappers/m2Pjh/src/toplevel_generators.jl:199 [22] include @ ./Base.jl:495 [inlined] [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2295 [24] top-level scope @ stdin:4 during initialization of module PROJ_jll in expression starting at /home/pkgeval/.julia/packages/GMT_jll/NtNTV/src/wrappers/x86_64-linux-gnu.jl:6 in expression starting at /home/pkgeval/.julia/packages/GMT_jll/NtNTV/src/GMT_jll.jl:2 in expression starting at stdin:4 ERROR: LoadError: Failed to precompile GMT_jll [b68b8c3f-ed99-5bef-9675-4739d9426b26] to "/home/pkgeval/.julia/compiled/v1.10/GMT_jll/jl_N1GEwz". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2542 [3] compilecache @ ./loading.jl:2414 [inlined] [4] (::Base.var"#971#972"{Base.PkgId})() @ Base ./loading.jl:2047 [5] mkpidlock(f::Base.var"#971#972"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ ./essentials.jl:894 [inlined] [9] invokelatest @ ./essentials.jl:889 [inlined] [10] maybe_cachefile_lock(f::Base.var"#971#972"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3057 [11] maybe_cachefile_lock @ ./loading.jl:3054 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2043 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1885 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1876 [17] macro expansion @ ./loading.jl:1863 [inlined] [18] macro expansion @ ./lock.jl:270 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1826 [20] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [21] invoke_in_world @ ./essentials.jl:923 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1819 [23] top-level scope @ ~/.julia/packages/GMT/YUDJi/src/GMT.jl:47 [24] include @ ./Base.jl:495 [inlined] [25] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2295 [26] top-level scope @ stdin:4 in expression starting at /home/pkgeval/.julia/packages/GMT/YUDJi/src/GMT.jl:1 in expression starting at stdin:4 Waterflow: Error During Test at /home/pkgeval/.julia/packages/GeophysicalModelGenerator/8XOi2/test/runtests.jl:85 Got exception outside of a @test LoadError: Failed to precompile GMT [5752ebe1-31b9-557e-87aa-f909b540aa54] to "/home/pkgeval/.julia/compiled/v1.10/GMT/jl_Zs2Aef". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:2542 [3] compilecache @ ./loading.jl:2414 [inlined] [4] (::Base.var"#971#972"{Base.PkgId})() @ Base ./loading.jl:2047 [5] mkpidlock(f::Base.var"#971#972"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:93 [6] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:88 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.10/FileWatching/src/pidfile.jl:111 [8] #invokelatest#2 @ ./essentials.jl:894 [inlined] [9] invokelatest @ ./essentials.jl:889 [inlined] [10] maybe_cachefile_lock(f::Base.var"#971#972"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3057 [11] maybe_cachefile_lock @ ./loading.jl:3054 [inlined] [12] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2043 [13] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1885 [14] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [15] invoke_in_world @ ./essentials.jl:923 [inlined] [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:1876 [17] macro expansion @ ./loading.jl:1863 [inlined] [18] macro expansion @ ./lock.jl:270 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1826 [20] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [21] invoke_in_world @ ./essentials.jl:923 [inlined] [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:1819 [23] include(fname::String) @ Base.MainInclude ./client.jl:487 [24] macro expansion @ ~/.julia/packages/GeophysicalModelGenerator/8XOi2/test/runtests.jl:86 [inlined] [25] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1582 [inlined] [26] macro expansion @ ~/.julia/packages/GeophysicalModelGenerator/8XOi2/test/runtests.jl:86 [inlined] [27] macro expansion @ /opt/julia/share/julia/stdlib/v1.10/Test/src/Test.jl:1582 [inlined] [28] top-level scope @ ~/.julia/packages/GeophysicalModelGenerator/8XOi2/test/runtests.jl:6 [29] include(fname::String) @ Base.MainInclude ./client.jl:487 [30] top-level scope @ none:6 in expression starting at /home/pkgeval/.julia/packages/GeophysicalModelGenerator/8XOi2/test/test_WaterFlow.jl:1 ┌ Warning: unsupported type: class=16 └ @ NCDatasets ~/.julia/packages/NCDatasets/WjwTE/src/netcdf_c.jl:1513 ┌ Warning: unsupported type: class=16 └ @ NCDatasets ~/.julia/packages/NCDatasets/WjwTE/src/netcdf_c.jl:1513 ┌ Warning: unsupported type: class=16 └ @ NCDatasets ~/.julia/packages/NCDatasets/WjwTE/src/netcdf_c.jl:1513 ┌ Warning: unsupported type: class=16 └ @ NCDatasets ~/.julia/packages/NCDatasets/WjwTE/src/netcdf_c.jl:1513 ┌ Warning: unsupported type: class=16 └ @ NCDatasets ~/.julia/packages/NCDatasets/WjwTE/src/netcdf_c.jl:1513 ┌ Warning: unsupported type: class=16 └ @ NCDatasets ~/.julia/packages/NCDatasets/WjwTE/src/netcdf_c.jl:1513 ┌ Warning: unsupported type: class=16 └ @ NCDatasets ~/.julia/packages/NCDatasets/WjwTE/src/netcdf_c.jl:1513 ┌ Warning: unsupported type: class=16 └ @ NCDatasets ~/.julia/packages/NCDatasets/WjwTE/src/netcdf_c.jl:1513 ┌ Warning: unsupported type: class=16 └ @ NCDatasets ~/.julia/packages/NCDatasets/WjwTE/src/netcdf_c.jl:1513 ┌ Warning: unsupported type: class=16 └ @ NCDatasets ~/.julia/packages/NCDatasets/WjwTE/src/netcdf_c.jl:1513 ┌ Warning: unsupported type: class=16 └ @ NCDatasets ~/.julia/packages/NCDatasets/WjwTE/src/netcdf_c.jl:1513 ┌ Warning: unsupported type: class=16 └ @ NCDatasets ~/.julia/packages/NCDatasets/WjwTE/src/netcdf_c.jl:1513 convert to meters ┌ Warning: unsupported type: class=16 └ @ NCDatasets ~/.julia/packages/NCDatasets/WjwTE/src/netcdf_c.jl:1513 ┌ Warning: unsupported type: class=16 └ @ NCDatasets ~/.julia/packages/NCDatasets/WjwTE/src/netcdf_c.jl:1513 ┌ Warning: unsupported type: class=16 └ @ NCDatasets ~/.julia/packages/NCDatasets/WjwTE/src/netcdf_c.jl:1513 ┌ Warning: unsupported type: class=16 └ @ NCDatasets ~/.julia/packages/NCDatasets/WjwTE/src/netcdf_c.jl:1513 typeof(getproperty(fields, names[ifield])) = NTuple{9, Array{Float64, 3}} Test Summary: | Pass Error Total Time GeophysicalModelGenerator | 425 2 427 35m59.7s Data import.jl | 37 37 1m54.7s Data types.jl | 60 60 1m53.6s Paraview | 11 11 1m02.8s Paraview collection | 9 9 1.6s Gravity model | 3 3 43.6s Nearest points | 3 3 15.5s Utils | 92 92 7m52.9s Transformations | 7 7 2m03.8s Surfaces | 25 25 2m00.2s LaMEM | 35 35 1m37.5s pTatin | 5 5 11.5s SetupGeometry | 49 49 4m00.7s STL | 1 1 8.0s IO | 4 4 43.5s ProfileProcessing | 27 27 2m21.5s GMT integration | 1 1 9.8s Gmsh integration | 2 2 3m47.8s Event counts | 8 8 1m03.5s Create movie | 4 4 3.6s Sea level | 12 12 1.0s Ridge Thermal Structure Tests | 6 6 52.8s Plate Tests | 6 6 1m32.4s Waterflow | 1 1 7.8s ASAGI_IO | 8 8 47.6s Chmy | 11 11 41.9s ERROR: LoadError: Some tests did not pass: 425 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/GeophysicalModelGenerator/8XOi2/test/runtests.jl:4 Testing failed after 2179.64s ERROR: LoadError: Package GeophysicalModelGenerator errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:2034 [3] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/Operations.jl:1915 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::Base.PipeEndpoint}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:444 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 2622.51s: package requires a missing binary dependency