Package evaluation to test AdvancedHMC on Julia 1.10.10 (c8be17dcfd*) started at 2026-02-02T20:29:33.992 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.10` Set-up completed after 4.88s ################################################################################ # Installation # Installing AdvancedHMC... Resolving package versions... Updating `~/.julia/environments/v1.10/Project.toml` [0bf59076] + AdvancedHMC v0.8.3 Updating `~/.julia/environments/v1.10/Manifest.toml` [80f14c24] + AbstractMCMC v5.13.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.43 [0bf59076] + AdvancedHMC v0.8.3 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [198e06fe] + BangBang v0.4.7 [9718e550] + Baselet v0.1.1 [a33af91c] + CompositionsBase v0.1.2 [88cd18e8] + ConsoleProgressMonitor v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 [34004b35] + HypergeometricFunctions v0.3.28 [22cec73e] + InitialValues v0.3.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 [6fdf6af0] + LogDensityProblems v2.2.0 [996a588d] + LogDensityProblemsAD v1.13.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [21216c6a] + Preferences v1.5.1 [33c8b6b6] + ProgressLogging v0.1.6 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [171d559e] + SplittablesBase v0.1.15 [1e83bf80] + StaticArraysCore v1.4.4 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [5d786b92] + TerminalLoggers v0.1.7 [28d57a85] + Transducers v0.4.85 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts [2a0f44e3] + Base64 [ade2ca70] + Dates [8ba89e20] + Distributed [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [de0858da] + Printf [9a3f8284] + Random [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization [6462fe0b] + Sockets [2f01184e] + SparseArrays v1.10.0 [10745b16] + Statistics v1.10.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.23+5 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.2.1+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 Installation completed after 9.25s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ┌ Warning: Circular dependency detected. │ Precompilation will be skipped for dependencies in this cycle: │ ┌ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt │ └─ OrdinaryDiffEqCore → OrdinaryDiffEqCoreSparseArraysExt │ Precompilation will also be skipped for the following, which depend on the above cycle: │ OrdinaryDiffEqExplicitRK │ OrdinaryDiffEq │ OrdinaryDiffEqDifferentiation → OrdinaryDiffEqDifferentiationSparseArraysExt │ OrdinaryDiffEqPDIRK │ OrdinaryDiffEqHighOrderRK │ OrdinaryDiffEqLowStorageRK │ OrdinaryDiffEqStabilizedRK │ OrdinaryDiffEqSymplecticRK │ OrdinaryDiffEqStabilizedIRK │ OrdinaryDiffEqSSPRK │ OrdinaryDiffEqLowOrderRK │ AdvancedHMC → AdvancedHMCOrdinaryDiffEqExt │ OrdinaryDiffEqFunctionMap │ OrdinaryDiffEqExponentialRK │ OrdinaryDiffEqLinear │ OrdinaryDiffEqDifferentiation │ OrdinaryDiffEqNonlinearSolve │ OrdinaryDiffEqTsit5 │ OrdinaryDiffEqSDIRK │ OrdinaryDiffEqBDF │ OrdinaryDiffEqExtrapolation │ OrdinaryDiffEqVerner │ OrdinaryDiffEqNordsieck │ OrdinaryDiffEqPRK │ OrdinaryDiffEqDefault │ OrdinaryDiffEqFIRK │ OrdinaryDiffEqRKN │ OrdinaryDiffEqRosenbrock │ OrdinaryDiffEqIMEXMultistep │ OrdinaryDiffEqFeagin │ OrdinaryDiffEqQPRK │ OrdinaryDiffEqAdamsBashforthMoulton └ @ Pkg.API.Precompilation /opt/julia/share/julia/stdlib/v1.10/Pkg/src/precompilation.jl:583 Precompiling packages... 18090.8 ms ✓ AdvancedHMC → AdvancedHMCComponentArraysExt 1 dependency successfully precompiled in 29 seconds. 341 already precompiled. 34 skipped due to circular dependency. Precompilation completed after 36.39s ################################################################################ # Testing # Testing AdvancedHMC Status `/tmp/jl_zh1Rf4/Project.toml` [47edcb42] ADTypes v1.21.0 [80f14c24] AbstractMCMC v5.13.0 [0bf59076] AdvancedHMC v0.8.3 [4c88cf16] Aqua v0.8.14 [76274a88] Bijectors v0.15.16 [b0b7db55] ComponentArrays v0.15.31 [31c24e10] Distributions v0.25.123 [1a297f60] FillArrays v1.16.0 [f6369f11] ForwardDiff v1.3.2 ⌅ [c3a54625] JET v0.9.18 [6fdf6af0] LogDensityProblems v2.2.0 [996a588d] LogDensityProblemsAD v1.13.1 [c7f686f2] MCMCChains v7.7.0 [1dea7af3] OrdinaryDiffEq v6.108.0 [e0db7c4e] ReTest v0.3.4 [efcf1570] Setfield v1.1.2 [e88e6eb3] Zygote v0.7.10 [37e2e46d] LinearAlgebra [44cfe95a] Pkg v1.10.0 [9a3f8284] Random [10745b16] Statistics v1.10.0 [8dfed614] Test Status `/tmp/jl_zh1Rf4/Manifest.toml` [47edcb42] ADTypes v1.21.0 [621f4979] AbstractFFTs v1.5.0 [80f14c24] AbstractMCMC v5.13.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [0bf59076] AdvancedHMC v0.8.3 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [dce04be8] ArgCheck v2.5.0 [4fba245c] ArrayInterface v7.22.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [198e06fe] BangBang v0.4.7 [9718e550] Baselet v0.1.1 [76274a88] Bijectors v0.15.16 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.6.2 [2a0fbf3d] CPUSummary v0.2.7 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [9e997f8a] ChangesOfVariables v0.1.10 [fb6a15b2] CloseOpenIntervals v0.1.13 ⌅ [da1fd8a2] CodeTracking v1.3.9 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [b0b7db55] ComponentArrays v0.15.31 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [2b5f629d] DiffEqBase v6.200.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.16 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.6 [f151be2c] EnzymeCore v0.8.18 [d4d017d3] ExponentialUtilities v1.30.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [b86e33f2] FFTA v0.3.1 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.1.0 [a4df4552] FastPower v1.3.1 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.29.0 [f6369f11] ForwardDiff v1.3.2 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [c145ed77] GenericSchur v0.5.6 [34004b35] HypergeometricFunctions v0.3.28 [7869d1d1] IRTools v0.4.15 [615f187c] IfElse v0.1.1 [22cec73e] InitialValues v0.3.1 [bd334432] InlineTest v0.2.0 [18e54dd8] IntegerMathUtils v0.1.3 [a98d9a8b] Interpolations v0.16.2 [8197267c] IntervalSets v0.7.13 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [c3a54625] JET v0.9.18 [692b3bcd] JLLWrappers v1.7.1 [ae98c720] Jieko v0.2.1 ⌅ [aa1ae85d] JuliaInterpreter v0.9.46 ⌅ [70703baa] JuliaSyntax v0.4.10 [5ab0869b] KernelDensity v0.6.11 [ba0b0d4f] Krylov v0.10.5 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [1d6d02ad] LeftChildRightSiblingTrees v0.2.1 [87fe0de2] LineSearch v0.1.6 [d3d80556] LineSearches v7.6.0 [7ed4a6bd] LinearSolve v3.57.0 [6fdf6af0] LogDensityProblems v2.2.0 [996a588d] LogDensityProblemsAD v1.13.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 ⌃ [6f1432cf] LoweredCodeUtils v3.2.2 [c7f686f2] MCMCChains v7.7.0 [be115224] MCMCDiagnosticTools v0.3.16 [e80e1ace] MLJModelInterface v1.12.1 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [dbb5928d] MappedArrays v0.4.3 [bb5d69b7] MaybeInplace v0.1.4 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 [d41bc354] NLSolversBase v8.0.0 [77ba4419] NaNMath v1.1.3 [c020b1a1] NaturalSort v1.0.0 [8913a72c] NonlinearSolve v4.15.0 [be0214bd] NonlinearSolveBase v2.11.2 [5959db7a] NonlinearSolveFirstOrder v1.11.1 [9a2c21bd] NonlinearSolveQuasiNewton v1.12.0 [26075421] NonlinearSolveSpectralMethods v1.6.0 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [1dea7af3] OrdinaryDiffEq v6.108.0 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.9.0 [6ad6398a] OrdinaryDiffEqBDF v1.16.0 [bbf590c4] OrdinaryDiffEqCore v3.4.0 [50262376] OrdinaryDiffEqDefault v1.12.0 [4302a76b] OrdinaryDiffEqDifferentiation v2.0.0 [9286f039] OrdinaryDiffEqExplicitRK v1.8.0 [e0540318] OrdinaryDiffEqExponentialRK v1.13.0 [becaefa8] OrdinaryDiffEqExtrapolation v1.15.0 [5960d6e9] OrdinaryDiffEqFIRK v1.22.0 [101fe9f7] OrdinaryDiffEqFeagin v1.8.0 [d3585ca7] OrdinaryDiffEqFunctionMap v1.9.0 [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.9.0 [9f002381] OrdinaryDiffEqIMEXMultistep v1.12.0 [521117fe] OrdinaryDiffEqLinear v1.10.0 [1344f307] OrdinaryDiffEqLowOrderRK v1.10.0 [b0944070] OrdinaryDiffEqLowStorageRK v1.12.0 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.20.0 [c9986a66] OrdinaryDiffEqNordsieck v1.9.0 [5dd0a6cf] OrdinaryDiffEqPDIRK v1.11.0 [5b33eab2] OrdinaryDiffEqPRK v1.8.0 [04162be5] OrdinaryDiffEqQPRK v1.8.0 [af6ede74] OrdinaryDiffEqRKN v1.9.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.23.0 [2d112036] OrdinaryDiffEqSDIRK v1.12.0 [669c94d9] OrdinaryDiffEqSSPRK v1.11.0 [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.11.0 [358294b1] OrdinaryDiffEqStabilizedRK v1.8.0 [fa646aed] OrdinaryDiffEqSymplecticRK v1.11.0 [b1df2697] OrdinaryDiffEqTsit5 v1.9.0 [79d7bb75] OrdinaryDiffEqVerner v1.11.0 [90014a1f] PDMats v0.11.37 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [d236fae5] PreallocationTools v1.1.2 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [27ebfcd6] Primes v0.5.7 [33c8b6b6] ProgressLogging v0.1.6 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [e0db7c4e] ReTest v0.3.4 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.47.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v2.2.10 [7e49a35a] RuntimeGeneratedFunctions v0.5.17 [94e857df] SIMDTypes v0.1.0 [0bca4576] SciMLBase v2.136.0 [19f34311] SciMLJacobianOperators v0.1.12 [a6db7da4] SciMLLogging v1.8.0 [c0aeaf25] SciMLOperators v1.15.1 [431bcebd] SciMLPublic v1.0.1 [53ae85a6] SciMLStructures v1.10.0 [30f210dd] ScientificTypesBase v3.0.0 [efcf1570] Setfield v1.1.2 [727e6d20] SimpleNonlinearSolve v2.10.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [0a514795] SparseMatrixColorings v0.4.23 [276daf66] SpecialFunctions v2.6.1 [171d559e] SplittablesBase v0.1.15 [aedffcd0] Static v1.3.1 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [64bff920] StatisticalTraits v3.5.0 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [7792a7ef] StrideArraysCore v0.5.8 [892a3eda] StringManipulation v0.4.2 [09ab397b] StructArrays v0.7.2 [2efcf032] SymbolicIndexingInterface v0.3.46 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [5d786b92] TerminalLoggers v0.1.7 [8290d209] ThreadingUtilities v0.5.5 [a759f4b9] TimerOutputs v0.5.29 [28d57a85] Transducers v0.4.85 [781d530d] TruncatedStacktraces v1.4.0 [efce3f68] WoodburyMatrices v1.1.0 [e88e6eb3] Zygote v0.7.10 [700de1a5] ZygoteRules v0.2.7 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [856f044c] MKL_jll v2025.2.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [ade2ca70] Dates [8ba89e20] Distributed [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [9fa8497b] Future [b77e0a4c] InteractiveUtils [4af54fe1] LazyArtifacts [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.10.0 [de0858da] Printf [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [1a1011a3] SharedArrays [6462fe0b] Sockets [2f01184e] SparseArrays v1.10.0 [10745b16] Statistics v1.10.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.4.0+0 [e37daf67] LibGit2_jll v1.6.4+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.23+5 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.2.1+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.52.0+1 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ┌ Warning: Module OrdinaryDiffEqCoreEnzymeCoreExt with build ID ffffffff-ffff-ffff-bbb4-02ebda75fed6 is missing from the cache. │ This may mean OrdinaryDiffEqCoreEnzymeCoreExt [ca1c724a-f4aa-55ef-b8e4-2f05449449ac] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2021 ┌ Error: Error during loading of extension OrdinaryDiffEqCoreEnzymeCoreExt of OrdinaryDiffEqCore, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ Declaring __precompile__(false) is not allowed in files that are being precompiled. │ Stacktrace: │ [1] _require(pkg::Base.PkgId, env::Nothing) │ @ Base ./loading.jl:2025 │ [2] __require_prelocked(uuidkey::Base.PkgId, env::Nothing) │ @ Base ./loading.jl:1885 │ [3] #invoke_in_world#3 │ @ ./essentials.jl:926 [inlined] │ [4] invoke_in_world │ @ ./essentials.jl:923 [inlined] │ [5] _require_prelocked │ @ ./loading.jl:1876 [inlined] │ [6] _require_prelocked │ @ ./loading.jl:1875 [inlined] │ [7] run_extension_callbacks(extid::Base.ExtensionId) │ @ Base ./loading.jl:1368 │ [8] run_extension_callbacks(pkgid::Base.PkgId) │ @ Base ./loading.jl:1403 │ [9] run_package_callbacks(modkey::Base.PkgId) │ @ Base ./loading.jl:1227 │ [10] __require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:1892 │ [11] #invoke_in_world#3 │ @ ./essentials.jl:926 [inlined] │ [12] invoke_in_world │ @ ./essentials.jl:923 [inlined] │ [13] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:1876 │ [14] macro expansion │ @ ./loading.jl:1863 [inlined] │ [15] macro expansion │ @ ./lock.jl:270 [inlined] │ [16] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:1826 │ [17] #invoke_in_world#3 │ @ ./essentials.jl:926 [inlined] │ [18] invoke_in_world │ @ ./essentials.jl:923 [inlined] │ [19] require(into::Module, mod::Symbol) │ @ Base ./loading.jl:1819 │ [20] include │ @ ./Base.jl:495 [inlined] │ [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) │ @ Base ./loading.jl:2295 │ [22] top-level scope │ @ stdin:4 │ [23] eval │ @ ./boot.jl:385 [inlined] │ [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:2149 │ [25] include_string │ @ ./loading.jl:2159 [inlined] │ [26] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:314 │ [27] _start() │ @ Base ./client.jl:550 └ @ Base loading.jl:1374 Environment variables for testing LANG=C.UTF-8 PYTHON= PATH=/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/opt/julia/bin JULIA_CPU_THREADS=1 JULIA_NUM_PRECOMPILE_TASKS=1 DISPLAY=:1 PKGEVAL=true OPENBLAS_NUM_THREADS=1 HOME=/home/pkgeval CI=true JULIA_PKG_PRECOMPILE_AUTO=0 JULIA_PKGEVAL=true JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia: R_HOME=* JULIA_NUM_THREADS=1 OPENBLAS_MAIN_FREE=1 JULIA_LOAD_PATH=@:/tmp/jl_zh1Rf4 WARNING: using deprecated binding Distributions.MatrixReshaped in Bijectors. , use Distributions.ReshapedDistribution{2, S, D} where D<:Distributions.Distribution{Distributions.ArrayLikeVariate{1}, S} where S<:Distributions.ValueSupport instead. WARNING: Bijectors.MatrixReshaped is deprecated, use Distributions.ReshapedDistribution{2, S, D} where D<:Distributions.Distribution{Distributions.ArrayLikeVariate{1}, S} where S<:Distributions.ValueSupport instead. likely near /home/pkgeval/.julia/packages/AdvancedHMC/kEVkt/test/quality.jl:7 Test Summary: | Pass Total Time Aqua | 11 11 43.2s Test Summary: | Pass Total Time JET | 1 1 2m05.9s Pass Main: Metric | 5 Sample momentum variables from metric via vector of RNGs | 2 Resize metric | 3 Hamiltonian | 1 PhasePoint | 6 Energy | 120 Energy with ComponentArrays | 180 ┌ Info: Performance of loop of step() v.s. step() │ n_steps = 10 │ t_step_loop = 0.359515631 │ t_step = 0.014032897 └ t_step_loop / t_step = 25.619487622548643 Integrator | 35 step | 2 jitter | 14 Leapfrog | 6 JitteredLeapfrog | 8 update_nom_step_size | 8 Leapfrog | 4 JitteredLeapfrog | 4 temper | 7 Analytical solution to Eq (2.11) of Neal (2011) | 4 Trajectory | 247 Passing RNG | 12 TreeSampler | 5 TerminationCriterion | 2 Termination | 20 BinaryTree | 4 ClassicNoUTurn | 204 seed = 30 | 51 seed = 210 | 51 seed = 100 | 51 seed = 59 | 51 [ Info: Found initial step size 3.2 [ Info: Found initial step size 1.8 [ Info: Found initial step size 3.2 [ Info: Found initial step size 1.8 [ Info: Found initial step size 3.2 [ Info: Found initial step size 1.8 [ Info: Found initial step size 3.2 [ Info: Found initial step size 1.8 [ Info: Found initial step size 3.2 [ Info: Found initial step size 1.8 [ Info: Found initial step size 0.4 [ Info: Found initial step size 0.4 [ Info: Found initial step size 0.4 [ Info: Found initial step size 0.4 [ Info: Found initial step size 0.4 [ Info: Found initial step size 0.4 [ Info: Found initial step size 1.6 [ Info: Found initial step size 1.6 [ Info: Found initial step size 1.6 [ Info: Found initial step size 0.8125 [ Info: Found initial step size 3.2 [ Info: Found initial step size 3.2 Adaptation | 62 Online v.s. naive v.s. true var/cov estimation | 12 MassMatrixAdaptor constructors | 2 Stan HMC adaptors | 12 buffer > `n_adapts` | 0 Adapted mass v.s. true variance | 20 DiagEuclideanMetric | 10 DenseEuclideanMetric | 10 Initialisation adaptor by metric | 2 Deprecation | 14 sample | 3916 DiagEuclideanMetric | 1304 JitteredLeapfrog | 632 Trajectory{MultinomialTS,FixedIntegrationTime} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{SliceTS,Generalised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{MultinomialTS,StrictGeneralised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{SliceTS,StrictGeneralised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{EndPointTS,FixedNSteps} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{MultinomialTS,Original} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{MultinomialTS,FixedNSteps} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{EndPointTS,FixedIntegrationTime} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{MultinomialTS,Generalised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{SliceTS,Original} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Leapfrog | 632 Trajectory{MultinomialTS,FixedIntegrationTime} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{SliceTS,Generalised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{MultinomialTS,StrictGeneralised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{SliceTS,StrictGeneralised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{EndPointTS,FixedNSteps} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{MultinomialTS,Original} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{MultinomialTS,FixedNSteps} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{EndPointTS,FixedIntegrationTime} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{MultinomialTS,Generalised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{SliceTS,Original} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 TemperedLeapfrog | 40 Trajectory{MultinomialTS,FixedIntegrationTime} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{SliceTS,Generalised} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{MultinomialTS,StrictGeneralised} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{SliceTS,StrictGeneralised} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{EndPointTS,FixedNSteps} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{MultinomialTS,Original} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{MultinomialTS,FixedNSteps} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{EndPointTS,FixedIntegrationTime} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{MultinomialTS,Generalised} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{SliceTS,Original} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 DenseEuclideanMetric | 1304 JitteredLeapfrog | 632 Trajectory{MultinomialTS,FixedIntegrationTime} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{SliceTS,Generalised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{MultinomialTS,StrictGeneralised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{SliceTS,StrictGeneralised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{EndPointTS,FixedNSteps} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{MultinomialTS,Original} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{MultinomialTS,FixedNSteps} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{EndPointTS,FixedIntegrationTime} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{MultinomialTS,Generalised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{SliceTS,Original} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Leapfrog | 632 Trajectory{MultinomialTS,FixedIntegrationTime} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{SliceTS,Generalised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{MultinomialTS,StrictGeneralised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{SliceTS,StrictGeneralised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{EndPointTS,FixedNSteps} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{MultinomialTS,Original} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{MultinomialTS,FixedNSteps} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{EndPointTS,FixedIntegrationTime} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{MultinomialTS,Generalised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{SliceTS,Original} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 TemperedLeapfrog | 40 Trajectory{MultinomialTS,FixedIntegrationTime} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{SliceTS,Generalised} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{MultinomialTS,StrictGeneralised} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{SliceTS,StrictGeneralised} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{EndPointTS,FixedNSteps} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{MultinomialTS,Original} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{MultinomialTS,FixedNSteps} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{EndPointTS,FixedIntegrationTime} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{MultinomialTS,Generalised} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{SliceTS,Original} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 UnitEuclideanMetric | 1304 JitteredLeapfrog | 632 Trajectory{MultinomialTS,FixedIntegrationTime} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{SliceTS,Generalised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{MultinomialTS,StrictGeneralised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{SliceTS,StrictGeneralised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{EndPointTS,FixedNSteps} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{MultinomialTS,Original} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{MultinomialTS,FixedNSteps} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{EndPointTS,FixedIntegrationTime} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{MultinomialTS,Generalised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{SliceTS,Original} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Leapfrog | 632 Trajectory{MultinomialTS,FixedIntegrationTime} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{SliceTS,Generalised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{MultinomialTS,StrictGeneralised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{SliceTS,StrictGeneralised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{EndPointTS,FixedNSteps} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{MultinomialTS,Original} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{MultinomialTS,FixedNSteps} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{EndPointTS,FixedIntegrationTime} | 56 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 13 NaiveHMCAdaptor | 13 StepSizeAdaptorOnly | 13 StanHMCAdaptor | 13 Trajectory{MultinomialTS,Generalised} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 Trajectory{SliceTS,Original} | 68 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 16 NaiveHMCAdaptor | 16 StepSizeAdaptorOnly | 16 StanHMCAdaptor | 16 TemperedLeapfrog | 40 Trajectory{MultinomialTS,FixedIntegrationTime} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{SliceTS,Generalised} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{MultinomialTS,StrictGeneralised} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{SliceTS,StrictGeneralised} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{EndPointTS,FixedNSteps} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{MultinomialTS,Original} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{MultinomialTS,FixedNSteps} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{EndPointTS,FixedIntegrationTime} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{MultinomialTS,Generalised} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 Trajectory{SliceTS,Original} | 4 Base.show | 3 NoAdaptation | 1 MassMatrixAdaptorOnly | 0 NaiveHMCAdaptor | 0 StepSizeAdaptorOnly | 0 StanHMCAdaptor | 0 drop_warmup | 4 [ Info: Adaptation tests for FixedIntegrationTime with StepSizeAdaptor are skipped Vectorized vs separate sampling number of chains: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20] elapsed time [s] (vectorized): [1.0, 1.7, 0.8, 0.88, 0.91, 1.1, 1.2, 1.3, 1.4, 1.6, 2.4, 1.5, 1.6, 1.7, 1.9, 3.1, 1.9, 2.1, 2.0, 2.4] elapsed time [s] (separate): [0.36, 0.78, 0.82, 1.2, 1.4, 1.8, 2.1, 2.5, 2.7, 3.1, 3.4, 4.7, 4.1, 4.6, 5.1, 5.8, 6.9, 5.9, 6.8, 7.2] ratio of elapsed time: [0.34, 0.46, 1.0, 1.3, 1.6, 1.7, 1.8, 1.9, 2.0, 1.9, 1.4, 3.2, 2.6, 2.7, 2.7, 1.9, 3.7, 2.9, 3.4, 3.0] sample (vectorized) | 124 Demo | 2 Demo ComponentsArrays | 8 Test Diagonal ComponentArray metric | 4 Test Dense ComponentArray metric | 4 ADTypes | 4 Models | 1 gdemo | 1 [ Info: Found initial step size 0.8 [ Info: Found initial step size 0.8 AbstractMCMC w/ gdemo | 14 getparams and setparams!! | 8 MCMCChains w/ gdemo | 1 [ Info: Found initial step size 1.6 [ Info: Found initial step size 1.6 [ Info: Found initial step size 1.6 [ Info: Found initial step size 1.6 [ Info: Found initial step size 1.6 [ Info: Found initial step size 1.6 [ Info: Found initial step size 1.6 [ Info: Found initial step size 1.6 [ Info: Found initial step size 1.6 [ Info: Found initial step size 1.6 [ Info: Found initial step size 1.6 [ Info: Found initial step size 1.6 Constructors | 288 Float32 | 144 HMC | 12 HMC | 12 HMC | 12 HMC | 12 HMC | 12 HMCDA | 12 HMCDA | 12 NUTS | 12 NUTS | 12 NUTS | 12 NUTS | 12 NUTS | 12 Float64 | 144 HMC | 12 HMC | 12 HMC | 12 HMC | 12 HMC | 12 HMCDA | 12 HMCDA | 12 NUTS | 12 NUTS | 12 NUTS | 12 NUTS | 12 NUTS | 12 Utils | 3 initial_params | 3 Main | 5017 Testing AdvancedHMC tests passed Testing completed after 1983.71s PkgEval succeeded after 2067.1s