Package evaluation of SymFEL on Julia 1.12.0-DEV.2044 (c78016e4dc*) started at 2025-02-25T22:41:47.057 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.47s ################################################################################ # Installation # Installing SymFEL... Resolving package versions... Installed IrrationalConstants ─ v0.2.4 Installed Conda ─────────────── v1.10.2 Installed Parsers ───────────── v2.8.1 Installed JSON ──────────────── v0.21.4 Installed Preferences ───────── v1.4.3 Installed Latexify ──────────── v0.16.6 Installed SpecialFunctions ──── v2.5.0 Installed Format ────────────── v1.3.7 Installed RecipesBase ───────── v1.3.4 Installed JLLWrappers ───────── v1.7.0 Installed PyCall ────────────── v1.96.4 Installed OrderedCollections ── v1.8.0 Installed PrecompileTools ───── v1.2.1 Installed VersionParsing ────── v1.3.0 Installed LaTeXStrings ──────── v1.4.0 Installed OpenSpecFun_jll ───── v0.5.6+0 Installed LogExpFunctions ───── v0.3.29 Installed Requires ──────────── v1.3.0 Installed MacroTools ────────── v0.5.15 Installed CommonEq ──────────── v0.2.0 Installed CommonSolve ───────── v0.2.4 Installed DocStringExtensions ─ v0.9.3 Installed SymPy ─────────────── v1.2.1 Installed SymFEL ────────────── v0.2.2 Installing 1 artifacts Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.12/Project.toml` [98344202] + SymFEL v0.2.2 Updating `~/.julia/environments/v1.12/Manifest.toml` ⌅ [3709ef60] + CommonEq v0.2.0 [38540f10] + CommonSolve v0.2.4 [8f4d0f93] + Conda v1.10.2 [ffbed154] + DocStringExtensions v0.9.3 [1fa38f19] + Format v1.3.7 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.6 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [438e738f] + PyCall v1.96.4 [3cdcf5f2] + RecipesBase v1.3.4 [ae029012] + Requires v1.3.0 [276daf66] + SpecialFunctions v2.5.0 [98344202] + SymFEL v0.2.2 ⌅ [24249f21] + SymPy v1.2.1 [81def892] + VersionParsing v1.3.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Installation completed after 133.22s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 6364.8 ms ✓ TestEnv 1 dependency successfully precompiled in 9 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 156.59s ################################################################################ # Testing # Testing SymFEL Status `/tmp/jl_KzUN68/Project.toml` [98344202] SymFEL v0.2.2 ⌅ [24249f21] SymPy v1.2.1 [37e2e46d] LinearAlgebra v1.12.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_KzUN68/Manifest.toml` ⌅ [3709ef60] CommonEq v0.2.0 [38540f10] CommonSolve v0.2.4 [8f4d0f93] Conda v1.10.2 [ffbed154] DocStringExtensions v0.9.3 [1fa38f19] Format v1.3.7 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.6 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.15 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [438e738f] PyCall v1.96.4 [3cdcf5f2] RecipesBase v1.3.4 [ae029012] Requires v1.3.0 [276daf66] SpecialFunctions v2.5.0 [98344202] SymFEL v0.2.2 ⌅ [24249f21] SymPy v1.2.1 [81def892] VersionParsing v1.3.0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.64.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: Installing sympy via the Conda sympy package... [ Info: Running `conda install -q -y sympy` in root environment Channels: - conda-forge Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64 added / updated specs: - sympy The following packages will be downloaded: package | build ---------------------------|----------------- cpython-3.12.8 | py312hd8ed1ab_1 44 KB conda-forge gmp-6.3.0 | hac33072_2 449 KB conda-forge gmpy2-2.1.5 | py312h7201bc8_3 205 KB conda-forge mpc-1.3.1 | h24ddda3_1 114 KB conda-forge mpfr-4.2.1 | h90cbb55_3 620 KB conda-forge mpmath-1.3.0 | pyhd8ed1ab_1 429 KB conda-forge sympy-1.13.3 | pyh2585a3b_105 4.3 MB conda-forge ------------------------------------------------------------ Total: 6.1 MB The following NEW packages will be INSTALLED: cpython conda-forge/noarch::cpython-3.12.8-py312hd8ed1ab_1 gmp conda-forge/linux-64::gmp-6.3.0-hac33072_2 gmpy2 conda-forge/linux-64::gmpy2-2.1.5-py312h7201bc8_3 mpc conda-forge/linux-64::mpc-1.3.1-h24ddda3_1 mpfr conda-forge/linux-64::mpfr-4.2.1-h90cbb55_3 mpmath conda-forge/noarch::mpmath-1.3.0-pyhd8ed1ab_1 sympy conda-forge/noarch::sympy-1.13.3-pyh2585a3b_105 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done # Testing Lagrange elements # Testing Hermite elements n = 2 ErrorException("The degree of Hermite polynomials should be odd and >= 3") Testing get_em() function. ErrorException("Only Lagrange and Hermite FEM are implemented.") ErrorException("The third argument should verify der1 ∈ [0, …, deg1]...") ErrorException("The fourth parameter should verify der2 ∈ [0, …, deg2]...") ErrorException("The third parameter should verify der1 ∈ [0, …,int(deg1 / 2 + 1)]...") ErrorException("The fourth parameter should verify der2 ∈ [0, …,int(deg2 / 2 + 1)]...") ERROR: LoadError: TaskFailedException nested task error: BoundsError: attempt to access 1-element Vector{UInt64} at index [2] Stacktrace: [1] throw_boundserror(A::Vector{UInt64}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] _setindex! @ ./array.jl:990 [inlined] [3] setindex! @ ./array.jl:986 [inlined] [4] macro expansion @ ~/.julia/packages/SymFEL/6Iarr/src/assemble1d.jl:50 [inlined] [5] (::SymFEL.var"#3#4"{SymFEL.var"#5#6"{Int64, Int64, Int64, Int64, Matrix{Float64}, Vector{UInt64}, Vector{UInt64}, Vector{UInt64}, Vector{UInt64}, Vector{SparseArrays.SparseMatrixCSC{Float64, Int64}}, UnitRange{Int64}}})(tid::Int64; onethread::Bool) @ SymFEL ./threadingconstructs.jl:276 [6] #3 @ ./threadingconstructs.jl:243 [inlined] [7] (::Base.Threads.var"#threading_run##0#threading_run##1"{SymFEL.var"#3#4"{SymFEL.var"#5#6"{Int64, Int64, Int64, Int64, Matrix{Float64}, Vector{UInt64}, Vector{UInt64}, Vector{UInt64}, Vector{UInt64}, Vector{SparseArrays.SparseMatrixCSC{Float64, Int64}}, UnitRange{Int64}}}, Int64})() @ Base.Threads ./threadingconstructs.jl:177 Stacktrace: [1] threading_run(fun::SymFEL.var"#3#4"{SymFEL.var"#5#6"{Int64, Int64, Int64, Int64, Matrix{Float64}, Vector{UInt64}, Vector{UInt64}, Vector{UInt64}, Vector{UInt64}, Vector{SparseArrays.SparseMatrixCSC{Float64, Int64}}, UnitRange{Int64}}}, static::Bool) @ Base.Threads ./threadingconstructs.jl:196 [2] macro expansion @ ./threadingconstructs.jl:213 [inlined] [3] assemble_1d_FE_matrix(elem::Matrix{Float64}, nbNodes::Int64; intNodes1::Int64, intNodes2::Int64, dof1::Int64, dof2::Int64) @ SymFEL ~/.julia/packages/SymFEL/6Iarr/src/assemble1d.jl:47 [4] top-level scope @ ~/.julia/packages/SymFEL/6Iarr/test/runtests.jl:133 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [6] top-level scope @ none:6 [7] eval(m::Module, e::Any) @ Core ./boot.jl:488 [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:294 [9] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/SymFEL/6Iarr/test/runtests.jl:133 Testing failed after 100.58s ERROR: LoadError: Package SymFEL errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:307 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 424.49s: package tests unexpectedly errored