Package evaluation of RecurrenceAnalysis on Julia 1.12.0-DEV.2044 (c78016e4dc*) started at 2025-02-25T22:41:21.837 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 7.48s ################################################################################ # Installation # Installing RecurrenceAnalysis... Resolving package versions... Installed StateSpaceSets ─ v2.4.0 Updating `~/.julia/environments/v1.12/Project.toml` [639c3291] + RecurrenceAnalysis v2.1.1 Updating `~/.julia/environments/v1.12/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [35d6a980] + ColorSchemes v3.29.0 [3da002f7] + ColorTypes v0.12.0 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.0 [34da2185] + Compat v4.16.0 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.20 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.3 [53c48c17] + FixedPointNumbers v0.8.5 [86223c79] + Graphs v1.12.0 [d25df0c9] + Inflate v0.1.5 [92d709cd] + IrrationalConstants v0.2.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [299715c1] + MarchingCubes v0.1.11 [e1d29d7a] + Missings v1.2.0 [77ba4419] + NaNMath v1.1.2 [b8a86587] + NearestNeighbors v0.4.21 [645ca80c] + Neighborhood v0.2.4 [bac558e1] + OrderedCollections v1.8.0 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [639c3291] + RecurrenceAnalysis v2.1.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.0 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [40b095a5] + StateSpaceSets v2.4.0 [90137ffa] + StaticArrays v1.9.12 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [62fd8b95] + TensorCore v0.1.1 [b8865327] + UnicodePlots v3.7.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 Installation completed after 4.36s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 254.98s ################################################################################ # Testing # Testing RecurrenceAnalysis Status `/tmp/jl_rrbfOP/Project.toml` [5732040d] DelayEmbeddings v2.8.0 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [86223c79] Graphs v1.12.0 [639c3291] RecurrenceAnalysis v2.1.1 [10745b16] Statistics v1.11.1 [f43a241f] Downloads v1.6.0 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_rrbfOP/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [35d6a980] ColorSchemes v3.29.0 [3da002f7] ColorTypes v0.12.0 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.0 [34da2185] Compat v4.16.0 [d38c429a] Contour v0.6.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.20 [5732040d] DelayEmbeddings v2.8.0 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.117 [ffbed154] DocStringExtensions v0.9.3 [1a297f60] FillArrays v1.13.0 [53c48c17] FixedPointNumbers v0.8.5 [86223c79] Graphs v1.12.0 [34004b35] HypergeometricFunctions v0.3.27 [d25df0c9] Inflate v0.1.5 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.15 [299715c1] MarchingCubes v0.1.11 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.2 [b8a86587] NearestNeighbors v0.4.21 [645ca80c] Neighborhood v0.2.4 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [639c3291] RecurrenceAnalysis v2.1.1 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.0 [79098fc4] Rmath v0.8.0 [699a6c99] SimpleTraits v0.9.4 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [40b095a5] StateSpaceSets v2.4.0 [90137ffa] StaticArrays v1.9.12 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.3.2 [62fd8b95] TensorCore v0.1.1 [b8865327] UnicodePlots v3.7.2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.64.0+1 Testing Running tests... running test file rmatrix_analytic.jl Rmatrix analytic: Error During Test at /home/pkgeval/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:6 Got exception outside of a @test LoadError: MethodError: Cannot `convert` an object of type Float64 to an object of type SVector{2, Float64} The function `convert` exists, but no method is defined for this combination of argument types. Closest candidates are: (::Type{SA})(::Any...) where SA<:StaticArraysCore.StaticArray @ StaticArrays ~/.julia/packages/StaticArrays/2dZx4/src/convert.jl:173 convert(::Type{T}, !Matched::T) where T @ Base Base_compiler.jl:134 convert(::Type{SA}, !Matched::AbstractArray) where SA<:StaticArraysCore.StaticArray @ StaticArrays ~/.julia/packages/StaticArrays/2dZx4/src/convert.jl:207 ... Stacktrace: [1] setindex! @ ./array.jl:996 [inlined] [2] _distancematrix(x::StateSpaceSet{2, Float64, SVector{2, Float64}}, metric::Euclidean, ::Val{false}) @ RecurrenceAnalysis ~/.julia/packages/RecurrenceAnalysis/oger7/src/matrices/distance_matrix.jl:103 [3] distancematrix @ ~/.julia/packages/RecurrenceAnalysis/oger7/src/matrices/distance_matrix.jl:20 [inlined] [4] distancematrix(x::StateSpaceSet{2, Float64, SVector{2, Float64}}) @ RecurrenceAnalysis ~/.julia/packages/RecurrenceAnalysis/oger7/src/matrices/distance_matrix.jl:20 [5] top-level scope @ ~/.julia/packages/RecurrenceAnalysis/oger7/test/rmatrix_analytic.jl:16 [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [7] IncludeInto @ ./Base.jl:309 [inlined] [8] macro expansion @ ~/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:6 [inlined] [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1771 [inlined] [10] testfile(file::String, testname::String) @ Main ~/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:6 [11] testfile(file::String) @ Main ~/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:5 [12] top-level scope @ ~/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:12 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1771 [inlined] [14] macro expansion @ ~/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:12 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [16] top-level scope @ none:6 [17] eval(m::Module, e::Any) @ Core ./boot.jl:488 [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:294 [19] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/RecurrenceAnalysis/oger7/test/rmatrix_analytic.jl:16 running test file rqa_rna_analytic.jl ┌ Warning: Infinite path length detected for vertex 1 └ @ Graphs ~/.julia/packages/Graphs/1ALGD/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 2 └ @ Graphs ~/.julia/packages/Graphs/1ALGD/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 3 └ @ Graphs ~/.julia/packages/Graphs/1ALGD/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 4 └ @ Graphs ~/.julia/packages/Graphs/1ALGD/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 5 └ @ Graphs ~/.julia/packages/Graphs/1ALGD/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 6 └ @ Graphs ~/.julia/packages/Graphs/1ALGD/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 7 └ @ Graphs ~/.julia/packages/Graphs/1ALGD/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 8 └ @ Graphs ~/.julia/packages/Graphs/1ALGD/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 9 └ @ Graphs ~/.julia/packages/Graphs/1ALGD/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 10 └ @ Graphs ~/.julia/packages/Graphs/1ALGD/src/distance.jl:78 running test file skeletontest.jl Precompiling packages... 2324.3 ms ✓ ColorVectorSpace → SpecialFunctionsExt 1 dependency successfully precompiled in 3 seconds. 25 already precompiled. running test file windowtest.jl Windowtest: Error During Test at /home/pkgeval/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:6 Got exception outside of a @test LoadError: MethodError: Cannot `convert` an object of type Float64 to an object of type SVector{2, Float64} The function `convert` exists, but no method is defined for this combination of argument types. Closest candidates are: (::Type{SA})(::Any...) where SA<:StaticArraysCore.StaticArray @ StaticArrays ~/.julia/packages/StaticArrays/2dZx4/src/convert.jl:173 convert(::Type{T}, !Matched::T) where T @ Base Base_compiler.jl:134 convert(::Type{SA}, !Matched::AbstractArray) where SA<:StaticArraysCore.StaticArray @ StaticArrays ~/.julia/packages/StaticArrays/2dZx4/src/convert.jl:207 ... Stacktrace: [1] setindex! @ ./array.jl:996 [inlined] [2] _distancematrix(x::StateSpaceSet{2, Float64, SVector{2, Float64}}, metric::Euclidean, ::Val{false}) @ RecurrenceAnalysis ~/.julia/packages/RecurrenceAnalysis/oger7/src/matrices/distance_matrix.jl:103 [3] distancematrix @ ~/.julia/packages/RecurrenceAnalysis/oger7/src/matrices/distance_matrix.jl:20 [inlined] [4] distancematrix(x::StateSpaceSet{2, Float64, SVector{2, Float64}}) @ RecurrenceAnalysis ~/.julia/packages/RecurrenceAnalysis/oger7/src/matrices/distance_matrix.jl:20 [5] top-level scope @ ~/.julia/packages/RecurrenceAnalysis/oger7/test/windowtest.jl:8 [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [7] IncludeInto @ ./Base.jl:309 [inlined] [8] macro expansion @ ~/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:6 [inlined] [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1771 [inlined] [10] testfile(file::String, testname::String) @ Main ~/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:6 [11] testfile(file::String) @ Main ~/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:5 [12] top-level scope @ ~/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:12 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1771 [inlined] [14] macro expansion @ ~/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:15 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [16] top-level scope @ none:6 [17] eval(m::Module, e::Any) @ Core ./boot.jl:488 [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:294 [19] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/RecurrenceAnalysis/oger7/test/windowtest.jl:8 Test Summary: | Pass Error Total Time RecurrenceAnalysis tests | 80 2 82 1m07.4s Rmatrix analytic | 1 1 8.0s Rqa rna analytic | 76 76 26.2s Skeletontest | 4 4 29.7s Windowtest | 1 1 2.0s RNG of the outermost testset: Random.Xoshiro(0xc38fb57d81fb7ca7, 0x4915c85ff8d72374, 0x9651834d742890c5, 0x43f24441eb6a8f13, 0x6a087cee2135a461) ERROR: LoadError: Some tests did not pass: 80 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/RecurrenceAnalysis/oger7/test/runtests.jl:11 Testing failed after 89.71s ERROR: LoadError: Package RecurrenceAnalysis errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:307 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 378.42s: package tests unexpectedly errored