Package evaluation of PyCallJLD2 on Julia 1.12.0-DEV.2044 (c78016e4dc*) started at 2025-02-25T22:24:56.208 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.96s ################################################################################ # Installation # Installing PyCallJLD2... Resolving package versions... Installed Conda ─────────────── v1.10.2 Installed Parsers ───────────── v2.8.1 Installed JSON ──────────────── v0.21.4 Installed JLD2 ──────────────── v0.4.54 Installed PyCall ────────────── v1.96.4 Installed Preferences ───────── v1.4.3 Installed PrecompileTools ───── v1.2.1 Installed PyCallJLD2 ────────── v0.1.2 Installed VersionParsing ────── v1.3.0 Installed OrderedCollections ── v1.8.0 Installed Requires ──────────── v1.3.0 Installed TranscodingStreams ── v0.11.3 Installed MacroTools ────────── v0.5.15 Installed DocStringExtensions ─ v0.9.3 Installed FileIO ────────────── v1.16.6 Updating `~/.julia/environments/v1.12/Project.toml` [07b0ad8c] + PyCallJLD2 v0.1.2 Updating `~/.julia/environments/v1.12/Manifest.toml` [8f4d0f93] + Conda v1.10.2 [ffbed154] + DocStringExtensions v0.9.3 [5789e2e9] + FileIO v1.16.6 ⌅ [033835bb] + JLD2 v0.4.54 [682c06a0] + JSON v0.21.4 [1914dd2f] + MacroTools v0.5.15 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [438e738f] + PyCall v1.96.4 [07b0ad8c] + PyCallJLD2 v0.1.2 [ae029012] + Requires v1.3.0 [3bb67fe8] + TranscodingStreams v0.11.3 [81def892] + VersionParsing v1.3.0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Installation completed after 131.71s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 6274.1 ms ✓ TestEnv 1 dependency successfully precompiled in 8 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 169.55s ################################################################################ # Testing # Testing PyCallJLD2 Status `/tmp/jl_MUdDLL/Project.toml` [ffbed154] DocStringExtensions v0.9.3 ⌅ [033835bb] JLD2 v0.4.54 [438e738f] PyCall v1.96.4 [07b0ad8c] PyCallJLD2 v0.1.2 [1bc83da4] SafeTestsets v0.1.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_MUdDLL/Manifest.toml` [8f4d0f93] Conda v1.10.2 [ffbed154] DocStringExtensions v0.9.3 [5789e2e9] FileIO v1.16.6 ⌅ [033835bb] JLD2 v0.4.54 [682c06a0] JSON v0.21.4 [1914dd2f] MacroTools v0.5.15 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [438e738f] PyCall v1.96.4 [07b0ad8c] PyCallJLD2 v0.1.2 [ae029012] Requires v1.3.0 [1bc83da4] SafeTestsets v0.1.0 [3bb67fe8] TranscodingStreams v0.11.3 [81def892] VersionParsing v1.3.0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.0.16+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: Installing sklearn.linear_model via the Conda scikit-learn package... [ Info: Running `conda install -q -y scikit-learn` in root environment Channels: - conda-forge Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64 added / updated specs: - scikit-learn The following packages will be downloaded: package | build ---------------------------|----------------- joblib-1.4.2 | pyhd8ed1ab_1 215 KB conda-forge scikit-learn-1.6.1 | py312h7a48858_0 10.1 MB conda-forge scipy-1.15.2 | py312ha707e6e_0 16.3 MB conda-forge threadpoolctl-3.5.0 | pyhc1e730c_0 23 KB conda-forge ------------------------------------------------------------ Total: 26.6 MB The following NEW packages will be INSTALLED: joblib conda-forge/noarch::joblib-1.4.2-pyhd8ed1ab_1 scikit-learn conda-forge/linux-64::scikit-learn-1.6.1-py312h7a48858_0 scipy conda-forge/linux-64::scipy-1.15.2-py312ha707e6e_0 threadpoolctl conda-forge/noarch::threadpoolctl-3.5.0-pyhc1e730c_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("models.jld2"). Fatal error: PyCall Save and Load: Error During Test at /home/pkgeval/.julia/packages/PyCallJLD2/G3ntZ/test/test_sets.jl:41 Got exception outside of a @test TypeError: in ccall: first argument not a pointer or valid constant expression, expected Ptr, got a value of type Tuple{Symbol, String} Stacktrace: [1] macro expansion @ ~/.julia/packages/PyCall/1gn3u/src/exception.jl:108 [inlined] [2] #8 @ ~/.julia/packages/PyCallJLD2/G3ntZ/src/lib/pycalljld2.jl:107 [inlined] [3] lock(f::PyCallJLD2.var"#8#9"{PyCallJLD2.PyObjectSerialization}, l::ReentrantLock) @ Base ./lock.jl:335 [4] pylock @ ~/.julia/packages/PyCallJLD2/G3ntZ/src/lib/pycalljld2.jl:67 [inlined] [5] rconvert @ ~/.julia/packages/PyCallJLD2/G3ntZ/src/lib/pycalljld2.jl:106 [inlined] [6] jlconvert(::JLD2.ReadRepresentation{PyCall.PyObject, JLD2.CustomSerialization{PyCallJLD2.PyObjectSerialization, JLD2.OnDiskRepresentation{(0,), Tuple{Vector{UInt8}}, Tuple{JLD2.RelOffset}, 8}()}}, f::JLD2.JLDFile{JLD2.MmapIO}, ptr::Ptr{Nothing}, header_offset::JLD2.RelOffset) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/data/custom_serialization.jl:73 [7] read_scalar(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, header_offset::JLD2.RelOffset) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/dataio.jl:37 [8] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, read_dataspace::Tuple{JLD2.ReadDataspace, JLD2.RelOffset, JLD2.DataLayout, JLD2.FilterPipeline}, attributes::Vector{JLD2.ReadAttribute}) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:98 [9] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, dt::JLD2.H5Datatype, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute}) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:86 [10] load_dataset(f::JLD2.JLDFile{JLD2.MmapIO}, offset::JLD2.RelOffset) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:50 [11] jlconvert(::JLD2.ReadRepresentation{PyCall.PyObject, JLD2.RelOffset}, f::JLD2.JLDFile{JLD2.MmapIO}, ptr::Ptr{Nothing}, ::JLD2.RelOffset) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/data/writing_datatypes.jl:320 [12] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/dataio.jl:70 [inlined] [13] macro expansion @ ./simdloop.jl:77 [inlined] [14] read_array!(v::Vector{PyCall.PyObject}, f::JLD2.JLDFile{JLD2.MmapIO}, rr::JLD2.ReadRepresentation{PyCall.PyObject, JLD2.RelOffset}) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/dataio.jl:68 [15] read_array(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, rr::JLD2.ReadRepresentation, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute}) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:250 [16] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, rr::JLD2.ReadRepresentation{Any, JLD2.RelOffset}, read_dataspace::Tuple{JLD2.ReadDataspace, JLD2.RelOffset, JLD2.DataLayout, JLD2.FilterPipeline}, attributes::Vector{JLD2.ReadAttribute}) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:136 [17] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, dt::JLD2.H5Datatype, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute}) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:86 [18] load_dataset(f::JLD2.JLDFile{JLD2.MmapIO}, offset::JLD2.RelOffset) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:50 [19] getindex(g::JLD2.Group{JLD2.JLDFile{JLD2.MmapIO}}, name::String) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/groups.jl:99 [20] getindex @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:372 [inlined] [21] load_data_or_dict(g::JLD2.JLDFile{JLD2.MmapIO}, varname::String) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/loadsave.jl:191 [22] fileio_load(f::FileIO.File{FileIO.DataFormat{:JLD2}, String}, varname::String; kwargs::@Kwargs{}) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/fileio.jl:54 [23] fileio_load(f::FileIO.File{FileIO.DataFormat{:JLD2}, String}, varname::String) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/fileio.jl:51 [24] #invokelatest#1 @ ./essentials.jl:1057 [inlined] [25] invokelatest @ ./essentials.jl:1053 [inlined] [26] action(call::Symbol, libraries::Vector{Union{Base.PkgId, Module}}, file::FileIO.Formatted, args::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/PtqMQ/src/loadsave.jl:219 [27] action @ ~/.julia/packages/FileIO/PtqMQ/src/loadsave.jl:196 [inlined] [28] action @ ~/.julia/packages/FileIO/PtqMQ/src/loadsave.jl:185 [inlined] [29] load(file::String, args::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/PtqMQ/src/loadsave.jl:113 [30] load(file::String, args::String) @ FileIO ~/.julia/packages/FileIO/PtqMQ/src/loadsave.jl:109 [31] top-level scope @ ~/.julia/packages/PyCallJLD2/G3ntZ/test/test_sets.jl:43 Stacktrace: [1] handle_error(e::TypeError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}}) @ FileIO ~/.julia/packages/FileIO/PtqMQ/src/error_handling.jl:71 [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String) @ FileIO ~/.julia/packages/FileIO/PtqMQ/src/error_handling.jl:66 [3] action(call::Symbol, libraries::Vector{Union{Base.PkgId, Module}}, file::FileIO.Formatted, args::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/PtqMQ/src/loadsave.jl:228 [4] action @ ~/.julia/packages/FileIO/PtqMQ/src/loadsave.jl:196 [inlined] [5] action @ ~/.julia/packages/FileIO/PtqMQ/src/loadsave.jl:185 [inlined] [6] load(file::String, args::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/PtqMQ/src/loadsave.jl:113 [7] load(file::String, args::String) @ FileIO ~/.julia/packages/FileIO/PtqMQ/src/loadsave.jl:109 [8] top-level scope @ ~/.julia/packages/PyCallJLD2/G3ntZ/test/test_sets.jl:43 [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1771 [inlined] [10] macro expansion @ ~/.julia/packages/PyCallJLD2/G3ntZ/test/test_sets.jl:55 [inlined] [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [12] top-level scope @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:30 [13] macro expansion @ ~/.julia/packages/PyCallJLD2/G3ntZ/test/runtests.jl:19 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1771 [inlined] [15] macro expansion @ ~/.julia/packages/PyCallJLD2/G3ntZ/test/runtests.jl:19 [inlined] [16] eval(m::Module, e::Any) @ Core ./boot.jl:488 [17] top-level scope @ ~/.julia/packages/PyCallJLD2/G3ntZ/test/runtests.jl:28 [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [19] top-level scope @ none:6 [20] eval(m::Module, e::Any) @ Core ./boot.jl:488 [21] exec_options(opts::Base.JLOptions) @ Base ./client.jl:294 [22] _start() @ Base ./client.jl:560 Test Summary: | Error Total Time All Test Sets | 1 1 1m58.0s PyCall Save and Load | 1 1 1m14.4s RNG of the outermost testset: Random.Xoshiro(0x9d52bcca9594a845, 0x4bf548613c85ec52, 0x41fc0764bd270d86, 0x8f16742d321fd82f, 0xb4bbe8225bc89a22) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PyCallJLD2/G3ntZ/test/runtests.jl:18 Testing failed after 113.55s ERROR: LoadError: Package PyCallJLD2 errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:307 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 539.25s: package tests unexpectedly errored