Package evaluation of PALEOmodel on Julia 1.12.0-DEV.2044 (c78016e4dc*) started at 2025-02-26T00:33:36.026 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.36s ################################################################################ # Installation # Installing PALEOmodel... Resolving package versions... Installed LRUCache ───────────────────────── v1.6.1 Installed Polyester ──────────────────────── v0.7.16 Installed InlineStrings ──────────────────── v1.4.3 Installed TimerOutputs ───────────────────── v0.5.27 Installed OffsetArrays ───────────────────── v1.15.0 Installed Accessors ──────────────────────── v0.1.42 Installed Preferences ────────────────────── v1.4.3 Installed EnumX ──────────────────────────── v1.0.4 Installed Sundials_jll ───────────────────── v5.2.3+0 Installed FunctionWrappers ───────────────── v1.1.3 Installed CEnum ──────────────────────────── v0.5.0 Installed InvertedIndices ────────────────── v1.3.1 Installed StaticArrays ───────────────────── v1.9.12 Installed RecursiveArrayTools ────────────── v3.31.0 Installed CodeTracking ───────────────────── v1.3.6 Installed SparsityTracing ────────────────── v0.2.6 Installed Statistics ─────────────────────── v1.11.1 Installed FileIO ─────────────────────────── v1.16.6 Installed CFTime ─────────────────────────── v0.1.4 Installed Static ─────────────────────────── v1.1.1 Installed Distances ──────────────────────── v0.10.12 Installed Missings ───────────────────────── v1.2.0 Installed FiniteDiff ─────────────────────── v2.27.0 Installed MAT ────────────────────────────── v0.10.7 Installed MuladdMacro ────────────────────── v0.2.4 Installed PALEOboxes ─────────────────────── v0.22.3 Installed IrrationalConstants ────────────── v0.2.4 Installed SIMDTypes ──────────────────────── v0.1.0 Installed SIMD ───────────────────────────── v3.7.1 Installed FastPower ──────────────────────── v1.1.1 Installed ArnoldiMethod ──────────────────── v0.4.0 Installed CpuId ──────────────────────────── v0.3.1 Installed JSON ───────────────────────────── v0.21.4 Installed DiffEqBase ─────────────────────── v6.164.1 Installed NLsolve ────────────────────────── v4.5.1 Installed SciMLBase ──────────────────────── v2.75.1 Installed ADTypes ────────────────────────── v1.13.0 Installed DataFrames ─────────────────────── v1.7.0 Installed Hwloc_jll ──────────────────────── v2.12.0+0 Installed Revise ─────────────────────────── v3.7.2 Installed Bzip2_jll ──────────────────────── v1.0.9+0 Installed Infiltrator ────────────────────── v1.8.6 Installed LoweredCodeUtils ───────────────── v3.1.0 Installed BenchmarkTools ─────────────────── v1.6.0 Installed SpecialFunctions ───────────────── v2.5.0 Installed XZ_jll ─────────────────────────── v5.6.4+1 Installed IfElse ─────────────────────────── v0.1.1 Installed MicrosoftMPI_jll ───────────────── v10.1.4+3 Installed SentinelArrays ─────────────────── v1.4.8 Installed StringEncodings ────────────────── v0.3.7 Installed StaticArraysCore ───────────────── v1.4.3 Installed NaNMath ────────────────────────── v1.1.2 Installed ThreadingUtilities ─────────────── v0.5.2 Installed SLEEF_jll ──────────────────────── v3.7.0+0 Installed ManualMemory ───────────────────── v0.1.8 Installed MPIPreferences ─────────────────── v0.1.11 Installed Lz4_jll ────────────────────────── v1.10.1+0 Installed NLSolversBase ──────────────────── v7.8.3 Installed TranscodingStreams ─────────────── v0.11.3 Installed Ratios ─────────────────────────── v0.4.5 Installed CommonSubexpressions ───────────── v0.3.1 Installed BufferedStreams ────────────────── v1.2.2 Installed StatsAPI ───────────────────────── v1.7.0 Installed ExprTools ──────────────────────── v0.1.10 Installed PALEOmodel ─────────────────────── v0.16.5 Installed DataStructures ─────────────────── v0.18.20 Installed NetCDF_jll ─────────────────────── v400.902.211+1 Installed CommonWorldInvalidations ───────── v1.0.0 Installed Compat ─────────────────────────── v4.16.0 Installed HDF5_jll ───────────────────────── v1.14.3+3 Installed CodecZlib ──────────────────────── v0.7.8 Installed StaticArrayInterface ───────────── v1.8.0 Installed MPICH_jll ──────────────────────── v4.3.0+0 Installed Graphs ─────────────────────────── v1.12.0 Installed DiffRules ──────────────────────── v1.15.1 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed SciMLStructures ────────────────── v1.6.1 Installed FunctionWrappersWrappers ───────── v0.1.3 Installed libzip_jll ─────────────────────── v1.11.3+0 Installed Zstd_jll ───────────────────────── v1.5.7+1 Installed TableTraits ────────────────────── v1.0.1 Installed Inflate ────────────────────────── v0.1.5 Installed LayoutPointers ─────────────────── v0.1.17 Installed DiffResults ────────────────────── v1.1.0 Installed Sundials ───────────────────────── v4.26.1 Installed JuliaInterpreter ───────────────── v0.9.41 Installed OpenMPI_jll ────────────────────── v4.1.6+0 Installed PooledArrays ───────────────────── v1.4.3 Installed Parsers ────────────────────────── v2.8.1 Installed PrettyTables ───────────────────── v2.4.0 Installed Setfield ───────────────────────── v1.1.2 Installed SciMLOperators ─────────────────── v0.3.12 Installed JLLWrappers ────────────────────── v1.7.0 Installed EnzymeCore ─────────────────────── v0.8.8 Installed ExproniconLite ─────────────────── v0.10.14 Installed ConstructionBase ───────────────── v1.5.8 Installed DataValueInterfaces ────────────── v1.0.0 Installed OrderedCollections ─────────────── v1.8.0 Installed FastClosures ───────────────────── v0.3.2 Installed NCDatasets ─────────────────────── v0.14.6 Installed PolyesterWeave ─────────────────── v0.2.2 Installed ArrayInterface ─────────────────── v7.18.0 Installed ChainRulesCore ─────────────────── v1.25.1 Installed Reexport ───────────────────────── v1.2.2 Installed LineSearches ───────────────────── v7.3.0 Installed LogExpFunctions ────────────────── v0.3.29 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed CommonDataModel ────────────────── v0.3.7 Installed PackageExtensionCompat ─────────── v1.0.2 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed UnPack ─────────────────────────── v1.0.2 Installed CompositionsBase ───────────────── v0.1.2 Installed HDF5 ───────────────────────────── v0.17.2 Installed UnsafeAtomics ──────────────────── v0.3.0 Installed MacroTools ─────────────────────── v0.5.15 Installed InverseFunctions ───────────────── v0.1.17 Installed Interpolations ─────────────────── v0.15.1 Installed SimpleTraits ───────────────────── v0.9.4 Installed GPUArraysCore ──────────────────── v0.2.0 Installed libaec_jll ─────────────────────── v1.1.3+0 Installed CommonSolve ────────────────────── v0.2.4 Installed Blosc_jll ──────────────────────── v1.21.6+2 Installed Atomix ─────────────────────────── v1.1.0 Installed YAML ───────────────────────────── v0.4.12 Installed DocStringExtensions ────────────── v0.9.3 Installed XML2_jll ───────────────────────── v2.13.6+1 Installed Crayons ────────────────────────── v4.1.1 Installed Adapt ──────────────────────────── v4.2.0 Installed StrideArraysCore ───────────────── v0.5.7 Installed CPUSummary ─────────────────────── v0.2.6 Installed Jieko ──────────────────────────── v0.2.1 Installed RuntimeGeneratedFunctions ──────── v0.5.13 Installed VertexSafeGraphs ───────────────── v0.2.0 Installed DataAPI ────────────────────────── v1.16.0 Installed ConcreteStructs ────────────────── v0.2.3 Installed RecipesBase ────────────────────── v1.3.4 Installed Tables ─────────────────────────── v1.12.0 Installed TruncatedStacktraces ───────────── v1.4.0 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed Moshi ──────────────────────────── v0.3.5 Installed Libiconv_jll ───────────────────── v1.18.0+0 Installed LaTeXStrings ───────────────────── v1.4.0 Installed MPItrampoline_jll ──────────────── v5.5.2+0 Installed StructArrays ───────────────────── v0.7.0 Installed SymbolicIndexingInterface ──────── v0.3.38 Installed PrecompileTools ────────────────── v1.2.1 Installed ForwardDiff ────────────────────── v0.10.38 Installed MultiFloats ────────────────────── v2.3.0 Installed AxisAlgorithms ─────────────────── v1.1.0 Installed FastBroadcast ──────────────────── v0.3.5 Installed Requires ───────────────────────── v1.3.0 Installed Parameters ─────────────────────── v0.12.3 Installed WoodburyMatrices ───────────────── v1.0.0 Installed StringManipulation ─────────────── v0.4.1 Installed SparseDiffTools ────────────────── v2.23.1 Installed DiskArrays ─────────────────────── v0.4.10 Installed SortingAlgorithms ──────────────── v1.2.1 Installed Sparspak ───────────────────────── v0.3.9 Installing 16 artifacts Installed artifact Blosc 44.2 KiB Installed artifact libzip 177.6 KiB Installed artifact Lz4 239.7 KiB Installed artifact libaec 96.2 KiB Installed artifact HDF5 5.3 MiB Installed artifact Sundials 2.1 MiB Installed artifact Libiconv 1.9 MiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact SLEEF 2.7 MiB Installed artifact XML2 2.5 MiB Installed artifact Zstd 646.0 KiB Installed artifact XZ 1.4 MiB Installed artifact NetCDF 901.2 KiB Installed artifact Bzip2 503.5 KiB Installed artifact MPICH 7.4 MiB Installed artifact Hwloc 3.5 MiB Updating `~/.julia/environments/v1.12/Project.toml` [bf7b4fbe] + PALEOmodel v0.16.5 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.13.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.2.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.18.0 [a9b6321e] + Atomix v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [6e4b80f9] + BenchmarkTools v1.6.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [fa961155] + CEnum v0.5.0 [179af706] + CFTime v0.1.4 [2a0fbf3d] + CPUSummary v0.2.6 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [da1fd8a2] + CodeTracking v1.3.6 [944b1d66] + CodecZlib v0.7.8 [1fbeeb36] + CommonDataModel v0.3.7 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.20 [e2d170a0] + DataValueInterfaces v1.0.0 [2b5f629d] + DiffEqBase v6.164.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [3c3547ce] + DiskArrays v0.4.10 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.3 [4e289a0a] + EnumX v1.0.4 [f151be2c] + EnzymeCore v0.8.8 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.1 [5789e2e9] + FileIO v1.16.6 [6a86dc24] + FiniteDiff v2.27.0 [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.12.0 [f67ccb44] + HDF5 v0.17.2 [615f187c] + IfElse v0.1.1 [5903a43b] + Infiltrator v1.8.6 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.3 [a98d9a8b] + Interpolations v0.15.1 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [ae98c720] + Jieko v0.2.1 [aa1ae85d] + JuliaInterpreter v0.9.41 [8ac3fa9e] + LRUCache v1.6.1 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [d3d80556] + LineSearches v7.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [6f1432cf] + LoweredCodeUtils v3.1.0 [23992714] + MAT v0.10.7 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.15 [d125e4d3] + ManualMemory v0.1.8 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.5 [46d2c3a1] + MuladdMacro v0.2.4 [bdf0d083] + MultiFloats v2.3.0 [85f8d34a] + NCDatasets v0.14.6 [d41bc354] + NLSolversBase v7.8.3 [2774e3e8] + NLsolve v4.5.1 [77ba4419] + NaNMath v1.1.2 [6fe1bfb0] + OffsetArrays v1.15.0 [bac558e1] + OrderedCollections v1.8.0 [804b410e] + PALEOboxes v0.22.3 [bf7b4fbe] + PALEOmodel v0.16.5 [65ce6f38] + PackageExtensionCompat v1.0.2 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.1 [f517fe37] + Polyester v0.7.16 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.31.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.0 [295af30f] + Revise v3.7.2 [7e49a35a] + RuntimeGeneratedFunctions v0.5.13 [fdea26ae] + SIMD v3.7.1 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.75.1 [c0aeaf25] + SciMLOperators v0.3.12 [53ae85a6] + SciMLStructures v1.6.1 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [47a9eef4] + SparseDiffTools v2.23.1 [06eadbd4] + SparsityTracing v0.2.6 [e56a9233] + Sparspak v0.3.9 [276daf66] + SpecialFunctions v2.5.0 [aedffcd0] + Static v1.1.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.12 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [7792a7ef] + StrideArraysCore v0.5.7 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.1 [09ab397b] + StructArrays v0.7.0 [c3572dad] + Sundials v4.26.1 [2efcf032] + SymbolicIndexingInterface v0.3.38 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [1e6cf692] + TestEnv v1.102.0 [8290d209] + ThreadingUtilities v0.5.2 [a759f4b9] + TimerOutputs v0.5.27 [3bb67fe8] + TranscodingStreams v0.11.3 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.0 [19fa3120] + VertexSafeGraphs v0.2.0 [efce3f68] + WoodburyMatrices v1.0.0 [ddb6d928] + YAML v0.4.12 [0b7ba130] + Blosc_jll v1.21.6+2 [6e34b625] + Bzip2_jll v1.0.9+0 ⌅ [0234f1f7] + HDF5_jll v1.14.3+3 [e33a78d0] + Hwloc_jll v2.12.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [7cb0a576] + MPICH_jll v4.3.0+0 [f1f71cc9] + MPItrampoline_jll v5.5.2+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [7243133f] + NetCDF_jll v400.902.211+1 ⌅ [fe0851c0] + OpenMPI_jll v4.1.6+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [63e82ce6] + SLEEF_jll v3.7.0+0 ⌅ [fb77eaff] + Sundials_jll v5.2.3+0 [02c8fc9c] + XML2_jll v2.13.6+1 [ffd25f8a] + XZ_jll v5.6.4+1 [3161d3a3] + Zstd_jll v1.5.7+1 [477f73a3] + libaec_jll v1.1.3+0 [337d8026] + libzip_jll v1.11.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [3a97d323] + MPFR_jll v4.2.1+2 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 22.91s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 6176.1 ms ✓ TestEnv 1 dependency successfully precompiled in 8 seconds. 25 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 2 direct dependencies failed to precompile: PALEOmodel Failed to precompile PALEOmodel [bf7b4fbe-ccb1-42c5-83c2-e6e9378b660c] to "/home/pkgeval/.julia/compiled/v1.12/PALEOmodel/jl_157uXA". ERROR: LoadError: cannot declare PALEOboxes.VarList_tuple_nothing exported; it is already declared public Stacktrace: [1] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [2] top-level scope @ ~/.julia/packages/PALEOboxes/4HX2Z/src/PALEOboxes.jl:124 [3] include(mod::Module, _path::String) @ Base ./Base.jl:307 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3004 [5] top-level scope @ stdin:6 [6] eval(m::Module, e::Any) @ Core ./boot.jl:488 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [8] include_string @ ./loading.jl:2865 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [10] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/4HX2Z/src/VariableReaction.jl:585 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/4HX2Z/src/PALEOboxes.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile PALEOboxes [804b410e-d900-4b2a-9ecd-f5a06d4c1fd4] to "/home/pkgeval/.julia/compiled/v1.12/PALEOboxes/jl_mEVWJQ". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3291 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1280 [8] #invokelatest_gr#227 @ ./reflection.jl:1288 [inlined] [9] invokelatest_gr @ ./reflection.jl:1282 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3862 [11] maybe_cachefile_lock @ ./loading.jl:3859 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [14] macro expansion @ ./loading.jl:2421 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [17] #invoke_in_world#2 @ ./essentials.jl:1092 [inlined] [18] invoke_in_world @ ./essentials.jl:1088 [inlined] [19] require(into::Module, mod::Symbol) @ Base ./loading.jl:2366 [20] top-level scope @ ~/.julia/packages/PALEOmodel/uXiph/src/PALEOmodel.jl:18 [21] include(mod::Module, _path::String) @ Base ./Base.jl:307 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3004 [23] top-level scope @ stdin:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:488 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [26] include_string @ ./loading.jl:2865 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [28] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PALEOmodel/uXiph/src/PALEOmodel.jl:1 in expression starting at stdin:6 PALEOboxes Failed to precompile PALEOboxes [804b410e-d900-4b2a-9ecd-f5a06d4c1fd4] to "/home/pkgeval/.julia/compiled/v1.12/PALEOboxes/jl_kF31pD". ERROR: LoadError: cannot declare PALEOboxes.VarList_tuple_nothing exported; it is already declared public Stacktrace: [1] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [2] top-level scope @ ~/.julia/packages/PALEOboxes/4HX2Z/src/PALEOboxes.jl:124 [3] include(mod::Module, _path::String) @ Base ./Base.jl:307 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3004 [5] top-level scope @ stdin:6 [6] eval(m::Module, e::Any) @ Core ./boot.jl:488 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [8] include_string @ ./loading.jl:2865 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [10] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/4HX2Z/src/VariableReaction.jl:585 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/4HX2Z/src/PALEOboxes.jl:1 in expression starting at stdin:6 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 940.92s ################################################################################ # Testing # Testing PALEOmodel Status `/tmp/jl_oHtROO/Project.toml` [a93c6f00] DataFrames v1.7.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.3 [5789e2e9] FileIO v1.16.6 [f6369f11] ForwardDiff v0.10.38 [5903a43b] Infiltrator v1.8.6 [bdf0d083] MultiFloats v2.3.0 [85f8d34a] NCDatasets v0.14.6 [2774e3e8] NLsolve v4.5.1 [bac558e1] OrderedCollections v1.8.0 [804b410e] PALEOboxes v0.22.3 [bf7b4fbe] PALEOmodel v0.16.5 [3cdcf5f2] RecipesBase v1.3.4 [ae029012] Requires v1.3.0 [295af30f] Revise v3.7.2 [0bca4576] SciMLBase v2.75.1 [47a9eef4] SparseDiffTools v2.23.1 [06eadbd4] SparsityTracing v0.2.6 [e56a9233] Sparspak v0.3.9 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.12 [c3572dad] Sundials v4.26.1 [1e6cf692] TestEnv v1.102.0 [a759f4b9] TimerOutputs v0.5.27 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [de0858da] Printf v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_oHtROO/Manifest.toml` [47edcb42] ADTypes v1.13.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.2.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.18.0 [a9b6321e] Atomix v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [6e4b80f9] BenchmarkTools v1.6.0 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] BufferedStreams v1.2.2 [fa961155] CEnum v0.5.0 [179af706] CFTime v0.1.4 [2a0fbf3d] CPUSummary v0.2.6 [d360d2e6] ChainRulesCore v1.25.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [da1fd8a2] CodeTracking v1.3.6 [944b1d66] CodecZlib v0.7.8 [1fbeeb36] CommonDataModel v0.3.7 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.5.8 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.20 [e2d170a0] DataValueInterfaces v1.0.0 [2b5f629d] DiffEqBase v6.164.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [3c3547ce] DiskArrays v0.4.10 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.3 [4e289a0a] EnumX v1.0.4 [f151be2c] EnzymeCore v0.8.8 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [a4df4552] FastPower v1.1.1 [5789e2e9] FileIO v1.16.6 [6a86dc24] FiniteDiff v2.27.0 [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [86223c79] Graphs v1.12.0 [f67ccb44] HDF5 v0.17.2 [615f187c] IfElse v0.1.1 [5903a43b] Infiltrator v1.8.6 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.3 [a98d9a8b] Interpolations v0.15.1 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 [aa1ae85d] JuliaInterpreter v0.9.41 [8ac3fa9e] LRUCache v1.6.1 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [d3d80556] LineSearches v7.3.0 [2ab3a3ac] LogExpFunctions v0.3.29 [6f1432cf] LoweredCodeUtils v3.1.0 [23992714] MAT v0.10.7 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.15 [d125e4d3] ManualMemory v0.1.8 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.5 [46d2c3a1] MuladdMacro v0.2.4 [bdf0d083] MultiFloats v2.3.0 [85f8d34a] NCDatasets v0.14.6 [d41bc354] NLSolversBase v7.8.3 [2774e3e8] NLsolve v4.5.1 [77ba4419] NaNMath v1.1.2 [6fe1bfb0] OffsetArrays v1.15.0 [bac558e1] OrderedCollections v1.8.0 [804b410e] PALEOboxes v0.22.3 [bf7b4fbe] PALEOmodel v0.16.5 [65ce6f38] PackageExtensionCompat v1.0.2 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.1 [f517fe37] Polyester v0.7.16 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.31.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.0 [295af30f] Revise v3.7.2 [7e49a35a] RuntimeGeneratedFunctions v0.5.13 [fdea26ae] SIMD v3.7.1 [94e857df] SIMDTypes v0.1.0 [0bca4576] SciMLBase v2.75.1 [c0aeaf25] SciMLOperators v0.3.12 [53ae85a6] SciMLStructures v1.6.1 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [699a6c99] SimpleTraits v0.9.4 [a2af1166] SortingAlgorithms v1.2.1 [47a9eef4] SparseDiffTools v2.23.1 [06eadbd4] SparsityTracing v0.2.6 [e56a9233] Sparspak v0.3.9 [276daf66] SpecialFunctions v2.5.0 [aedffcd0] Static v1.1.1 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.12 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [7792a7ef] StrideArraysCore v0.5.7 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.1 [09ab397b] StructArrays v0.7.0 [c3572dad] Sundials v4.26.1 [2efcf032] SymbolicIndexingInterface v0.3.38 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [1e6cf692] TestEnv v1.102.0 [8290d209] ThreadingUtilities v0.5.2 [a759f4b9] TimerOutputs v0.5.27 [3bb67fe8] TranscodingStreams v0.11.3 [781d530d] TruncatedStacktraces v1.4.0 [3a884ed6] UnPack v1.0.2 [013be700] UnsafeAtomics v0.3.0 [19fa3120] VertexSafeGraphs v0.2.0 [efce3f68] WoodburyMatrices v1.0.0 [ddb6d928] YAML v0.4.12 [0b7ba130] Blosc_jll v1.21.6+2 [6e34b625] Bzip2_jll v1.0.9+0 ⌅ [0234f1f7] HDF5_jll v1.14.3+3 [e33a78d0] Hwloc_jll v2.12.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [5ced341a] Lz4_jll v1.10.1+0 [7cb0a576] MPICH_jll v4.3.0+0 [f1f71cc9] MPItrampoline_jll v5.5.2+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [7243133f] NetCDF_jll v400.902.211+1 ⌅ [fe0851c0] OpenMPI_jll v4.1.6+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [63e82ce6] SLEEF_jll v3.7.0+0 ⌅ [fb77eaff] Sundials_jll v5.2.3+0 [02c8fc9c] XML2_jll v2.13.6+1 [ffd25f8a] XZ_jll v5.6.4+1 [3161d3a3] Zstd_jll v1.5.7+1 [477f73a3] libaec_jll v1.1.3+0 [337d8026] libzip_jll v1.11.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [3a97d323] MPFR_jll v4.2.1+2 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... Info Given PALEOboxes was explicitly requested, output will be shown live  ERROR: LoadError: cannot declare PALEOboxes.VarList_tuple_nothing exported; it is already declared public Stacktrace:  [1] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:308  [2] top-level scope  @ ~/.julia/packages/PALEOboxes/4HX2Z/src/PALEOboxes.jl:124  [3] include(mod::Module, _path::String)  @ Base ./Base.jl:307  [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3004  [5] top-level scope  @ stdin:6  [6] eval(m::Module, e::Any)  @ Core ./boot.jl:488  [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2855  [8] include_string  @ ./loading.jl:2865 [inlined]  [9] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:326  [10] _start()  @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/4HX2Z/src/VariableReaction.jl:585 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/4HX2Z/src/PALEOboxes.jl:1 in expression starting at stdin:6 ✗ PALEOboxes 0 dependencies successfully precompiled in 21 seconds. 143 already precompiled. All tests: Error During Test at /home/pkgeval/.julia/packages/PALEOmodel/uXiph/test/runtests.jl:5 Got exception outside of a @test LoadError: The following 1 direct dependency failed to precompile: PALEOboxes Failed to precompile PALEOboxes [804b410e-d900-4b2a-9ecd-f5a06d4c1fd4] to "/home/pkgeval/.julia/compiled/v1.12/PALEOboxes/jl_AVMbCe". ERROR: LoadError: cannot declare PALEOboxes.VarList_tuple_nothing exported; it is already declared public Stacktrace: [1] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [2] top-level scope @ ~/.julia/packages/PALEOboxes/4HX2Z/src/PALEOboxes.jl:124 [3] include(mod::Module, _path::String) @ Base ./Base.jl:307 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3004 [5] top-level scope @ stdin:6 [6] eval(m::Module, e::Any) @ Core ./boot.jl:488 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [8] include_string @ ./loading.jl:2865 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [10] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/4HX2Z/src/VariableReaction.jl:585 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/4HX2Z/src/PALEOboxes.jl:1 in expression starting at stdin: in expression starting at /home/pkgeval/.julia/packages/PALEOmodel/uXiph/test/runfieldtests.jl:5 Test Summary: | Error Total Time All tests | 1 1 21.7s RNG of the outermost testset: Random.Xoshiro(0x6b67c0df2b2808b6, 0x4598157f033754b2, 0x36834d0c6953dadd, 0x48da045b748b59db, 0x4ab6a11a7340c21a) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PALEOmodel/uXiph/test/runtests.jl:5 Testing failed after 42.28s ERROR: LoadError: Package PALEOmodel errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:307 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1038.03s: package fails to precompile