Package evaluation of MarkovChainHammer on Julia 1.12.0-DEV.2044 (c78016e4dc*) started at 2025-02-25T23:10:17.142


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.37s


################################################################################
# Installation
#

Installing MarkovChainHammer...
   Resolving package versions...
   Installed IrrationalConstants ───── v0.2.4
   Installed Rmath ─────────────────── v0.8.0
   Installed StatsFuns ─────────────── v1.3.2
   Installed JSON ──────────────────── v0.21.4
   Installed Expat_jll ─────────────── v2.6.5+0
   Installed Preferences ───────────── v1.4.3
   Installed PtrArrays ─────────────── v1.3.0
   Installed HypergeometricFunctions ─ v0.3.27
   Installed Revise ────────────────── v3.7.2
   Installed Parsers ───────────────── v2.8.1
   Installed IOCapture ─────────────── v0.2.5
   Installed JuliaInterpreter ──────── v0.9.41
   Installed LoweredCodeUtils ──────── v3.1.0
   Installed SpecialFunctions ──────── v2.5.0
   Installed DocumenterTools ───────── v0.1.20
   Installed libsass_jll ───────────── v3.6.6+0
   Installed PDMats ────────────────── v0.11.32
   Installed DataAPI ───────────────── v1.16.0
   Installed Git_jll ───────────────── v2.47.1+0
   Installed JLLWrappers ───────────── v1.7.0
   Installed Libiconv_jll ──────────── v1.18.0+0
   Installed PrecompileTools ───────── v1.2.1
   Installed Gumbo_jll ─────────────── v0.10.2+0
   Installed OpenSSH_jll ───────────── v9.9.2+0
   Installed AbstractTrees ─────────── v0.4.5
   Installed OrderedCollections ────── v1.8.0
   Installed Gumbo ─────────────────── v0.8.3
   Installed Documenter ────────────── v0.27.25
   Installed QuadGK ────────────────── v2.11.2
   Installed Reexport ──────────────── v1.2.2
   Installed Rmath_jll ─────────────── v0.5.1+0
   Installed CodeTracking ──────────── v1.3.6
   Installed FillArrays ────────────── v1.13.0
   Installed Statistics ────────────── v1.11.1
   Installed LogExpFunctions ───────── v0.3.29
   Installed DataStructures ────────── v0.18.20
   Installed ProgressBars ──────────── v1.5.1
   Installed Requires ──────────────── v1.3.0
   Installed StatsAPI ──────────────── v1.7.0
   Installed Compat ────────────────── v4.16.0
   Installed OpenSpecFun_jll ───────── v0.5.6+0
   Installed AliasTables ───────────── v1.1.3
   Installed Sass ──────────────────── v0.2.0
   Installed Git ───────────────────── v1.3.1
   Installed Missings ──────────────── v1.2.0
   Installed SortingAlgorithms ─────── v1.2.1
   Installed ANSIColoredPrinters ───── v0.0.1
   Installed StatsBase ─────────────── v0.34.4
   Installed DocStringExtensions ───── v0.9.3
   Installed MarkovChainHammer ─────── v0.0.12
   Installed Distributions ─────────── v0.25.117
  Installing 8 artifacts
   Installed artifact Rmath       121.9 KiB
   Installed artifact OpenSpecFun 194.9 KiB
   Installed artifact OpenSSH     4.2 MiB
   Installed artifact Expat       271.4 KiB
   Installed artifact Gumbo       703.8 KiB
   Installed artifact libsass     8.9 MiB
   Installed artifact Libiconv    1.9 MiB
   Installed artifact Git         49.0 MiB
    Updating `~/.julia/environments/v1.12/Project.toml`
  [38c40fd0] + MarkovChainHammer v0.0.12
    Updating `~/.julia/environments/v1.12/Manifest.toml`
  [a4c015fc] + ANSIColoredPrinters v0.0.1
  [1520ce14] + AbstractTrees v0.4.5
  [66dad0bd] + AliasTables v1.1.3
  [da1fd8a2] + CodeTracking v1.3.6
  [34da2185] + Compat v4.16.0
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.20
  [31c24e10] + Distributions v0.25.117
  [ffbed154] + DocStringExtensions v0.9.3
⌅ [e30172f5] + Documenter v0.27.25
  [35a29f4d] + DocumenterTools v0.1.20
  [1a297f60] + FillArrays v1.13.0
  [d7ba0133] + Git v1.3.1
  [708ec375] + Gumbo v0.8.3
  [34004b35] + HypergeometricFunctions v0.3.27
  [b5f81e59] + IOCapture v0.2.5
  [92d709cd] + IrrationalConstants v0.2.4
  [692b3bcd] + JLLWrappers v1.7.0
  [682c06a0] + JSON v0.21.4
  [aa1ae85d] + JuliaInterpreter v0.9.41
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [6f1432cf] + LoweredCodeUtils v3.1.0
  [38c40fd0] + MarkovChainHammer v0.0.12
  [e1d29d7a] + Missings v1.2.0
  [bac558e1] + OrderedCollections v1.8.0
  [90014a1f] + PDMats v0.11.32
  [69de0a69] + Parsers v2.8.1
  [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [49802e3a] + ProgressBars v1.5.1
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.0
  [295af30f] + Revise v3.7.2
  [79098fc4] + Rmath v0.8.0
  [322a6be2] + Sass v0.2.0
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.0
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.4
  [4c63d2b9] + StatsFuns v1.3.2
  [2e619515] + Expat_jll v2.6.5+0
  [f8c6e375] + Git_jll v2.47.1+0
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  [56f22d72] + Artifacts v1.11.0
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  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.12.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.11.1+1
  [e37daf67] + LibGit2_jll v1.9.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2024.12.31
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.5+0
  [458c3c95] + OpenSSL_jll v3.0.16+0
  [efcefdf7] + PCRE2_jll v10.44.0+1
  [bea87d4a] + SuiteSparse_jll v7.8.3+2
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.12.0+0
  [8e850ede] + nghttp2_jll v1.64.0+1
  [3f19e933] + p7zip_jll v17.5.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 18.89s


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# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
   6385.1 ms  ✓ TestEnv
  1 dependency successfully precompiled in 9 seconds. 25 already precompiled.

Precompiling package dependencies...

Precompilation completed after 257.98s


################################################################################
# Testing
#

     Testing MarkovChainHammer
      Status `/tmp/jl_Pxjbvt/Project.toml`
  [31c24e10] Distributions v0.25.117
⌅ [e30172f5] Documenter v0.27.25
  [35a29f4d] DocumenterTools v0.1.20
  [38c40fd0] MarkovChainHammer v0.0.12
  [aea7be01] PrecompileTools v1.2.1
  [49802e3a] ProgressBars v1.5.1
  [189a3867] Reexport v1.2.2
  [295af30f] Revise v3.7.2
  [10745b16] Statistics v1.11.1
  [37e2e46d] LinearAlgebra v1.12.0
  [9a3f8284] Random v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_Pxjbvt/Manifest.toml`
  [a4c015fc] ANSIColoredPrinters v0.0.1
  [1520ce14] AbstractTrees v0.4.5
  [66dad0bd] AliasTables v1.1.3
  [da1fd8a2] CodeTracking v1.3.6
  [34da2185] Compat v4.16.0
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.18.20
  [31c24e10] Distributions v0.25.117
  [ffbed154] DocStringExtensions v0.9.3
⌅ [e30172f5] Documenter v0.27.25
  [35a29f4d] DocumenterTools v0.1.20
  [1a297f60] FillArrays v1.13.0
  [d7ba0133] Git v1.3.1
  [708ec375] Gumbo v0.8.3
  [34004b35] HypergeometricFunctions v0.3.27
  [b5f81e59] IOCapture v0.2.5
  [92d709cd] IrrationalConstants v0.2.4
  [692b3bcd] JLLWrappers v1.7.0
  [682c06a0] JSON v0.21.4
  [aa1ae85d] JuliaInterpreter v0.9.41
  [2ab3a3ac] LogExpFunctions v0.3.29
  [6f1432cf] LoweredCodeUtils v3.1.0
  [38c40fd0] MarkovChainHammer v0.0.12
  [e1d29d7a] Missings v1.2.0
  [bac558e1] OrderedCollections v1.8.0
  [90014a1f] PDMats v0.11.32
  [69de0a69] Parsers v2.8.1
  [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [49802e3a] ProgressBars v1.5.1
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.0
  [295af30f] Revise v3.7.2
  [79098fc4] Rmath v0.8.0
  [322a6be2] Sass v0.2.0
  [a2af1166] SortingAlgorithms v1.2.1
  [276daf66] SpecialFunctions v2.5.0
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
  [2913bbd2] StatsBase v0.34.4
  [4c63d2b9] StatsFuns v1.3.2
  [2e619515] Expat_jll v2.6.5+0
  [f8c6e375] Git_jll v2.47.1+0
  [528830af] Gumbo_jll v0.10.2+0
  [94ce4f54] Libiconv_jll v1.18.0+0
  [9bd350c2] OpenSSH_jll v9.9.2+0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [47bcb7c8] libsass_jll v3.6.6+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
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  [de0858da] Printf v1.11.0
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  [6462fe0b] Sockets v1.11.0
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  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.11.1+1
  [e37daf67] LibGit2_jll v1.9.0+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2024.12.31
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.5+0
  [458c3c95] OpenSSL_jll v3.0.16+0
  [efcefdf7] PCRE2_jll v10.44.0+1
  [bea87d4a] SuiteSparse_jll v7.8.3+2
  [83775a58] Zlib_jll v1.3.1+2
  [8e850b90] libblastrampoline_jll v5.12.0+0
  [8e850ede] nghttp2_jll v1.64.0+1
  [3f19e933] p7zip_jll v17.5.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
Test Summary:          | Pass  Total  Time
Column Sum Consistency |    3      3  6.9s
Test Summary:                  | Pass  Total  Time
Hand Constructed: Default Case |    4      4  2.8s
Test Summary:                            | Pass  Total   Time
Symmetric Hand Constructed: Default Case |    6      6  10.9s
Test Summary:               | Pass  Total  Time
Hand Constructed: Edge Case |    3      3  0.1s
Test Summary:                 | Pass  Total  Time
Hand Constructed: Edge Case 2 |    3      3  0.0s
Test Summary:                                 | Pass  Total  Time
Hand Constructed: Edge Case 3 and Consistency |    3      3  1.3s
Test Summary:                                 | Pass  Total  Time
Transition Rate Matrix Consistency: Edge Case |    3      3  1.6s
[ Info: computing sparse count matrix

0.0%┣                                                ┫ 0/9 [00:00<00:00, -0s/it]

11.1%┣████▊                                      ┫ 1/9 [00:01<Inf:Inf, InfGs/it]

100.0%┣██████████████████████████████████████████████┫ 9/9 [00:01<00:00, 11it/s]

100.0%┣██████████████████████████████████████████████┫ 9/9 [00:01<00:00, 11it/s]
[ Info: computing sparse count matrix

0.0%┣                                                ┫ 0/9 [00:00<00:00, -0s/it]

100.0%┣███████████████████████████████████████████┫ 9/9 [00:00<00:00, 51.8kit/s]

100.0%┣███████████████████████████████████████████┫ 9/9 [00:00<00:00, 34.2kit/s]

0.0%┣                                                ┫ 0/3 [00:00<00:00, -0s/it]

33.3%┣██████████████▍                            ┫ 1/3 [00:01<Inf:Inf, InfGs/it]

100.0%┣███████████████████████████████████████████████┫ 3/3 [00:01<00:00, 3it/s]

100.0%┣███████████████████████████████████████████████┫ 3/3 [00:01<00:00, 3it/s]

0.0%┣                                                ┫ 0/1 [00:00<00:00, -0s/it]

100.0%┣██████████████████████████████████████████┫ 1/1 [00:00<Inf:Inf, InfGs/it]

100.0%┣██████████████████████████████████████████┫ 1/1 [00:00<Inf:Inf, InfGs/it]

0.0%┣                                                ┫ 0/3 [00:00<00:00, -0s/it]

100.0%┣███████████████████████████████████████████┫ 3/3 [00:00<00:00, 18.4kit/s]

100.0%┣███████████████████████████████████████████┫ 3/3 [00:00<00:00, 12.5kit/s]

0.0%┣                                                ┫ 0/2 [00:00<00:00, -0s/it]

100.0%┣████████████████████████████████████████████┫ 2/2 [00:00<00:00, 1.9kit/s]

100.0%┣████████████████████████████████████████████┫ 2/2 [00:00<00:00, 1.6kit/s]

0.0%┣                                                ┫ 0/3 [00:00<00:00, -0s/it]

100.0%┣███████████████████████████████████████████┫ 3/3 [00:00<00:00, 25.7kit/s]

100.0%┣███████████████████████████████████████████┫ 3/3 [00:00<00:00, 15.7kit/s]
Test Summary:                               | Pass  Total   Time
Hand Constructed: Default Case Sparse Check |    4      4  13.3s
Test Summary:               | Pass  Total  Time
Convergence Test: Generator |   36     36  8.6s
Test Summary:                      | Pass  Total  Time
Convergence Test: Perron Frobenius |   36     36  1.8s
Test Summary:       | Pass  Total  Time
Step Heuristic Test |    4      4  5.6s
Test Summary: | Pass  Total  Time
Holding Times |    4      4  1.1s
Test Summary:                  | Pass  Total  Time
ContinuousTimeEmpiricalProcess |    2      2  2.5s
Test Summary:                        | Pass  Total   Time
Bayesian Matrix: Basic Functionality |   18     18  16.3s
Test Summary:                             | Pass  Total  Time
Bayesian Matrix: Random Matrix Properties |    6      6  2.0s
Test Summary:                       | Pass  Total  Time
Bayesian Matrix: Prior to Posterior |    4      4  3.6s
┌ Warning: no data for state 2, falling back on prior
└ @ MarkovChainHammer.BayesianMatrix ~/.julia/packages/MarkovChainHammer/JX04A/src/BayesianMatrix/constructors.jl:134
┌ Warning: no data for state 2, falling back on prior
└ @ MarkovChainHammer.BayesianMatrix ~/.julia/packages/MarkovChainHammer/JX04A/src/BayesianMatrix/constructors.jl:134
Test Summary:                           | Pass  Total  Time
Bayesian Matrix: Ensemble Functionality |    1      1  1.8s
Test Summary:                | Pass  Total  Time
Unpacking and Reconstructing |    5      5  1.3s
Leicht Newman: Test Failed at /home/pkgeval/.julia/packages/MarkovChainHammer/JX04A/test/test_Clustering.jl:15
  Expression: all(community_cut1[1] .== [1])

Stacktrace:
 [1] top-level scope
   @ ~/.julia/packages/MarkovChainHammer/JX04A/test/test_Clustering.jl:8
 [2] macro expansion
   @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1771 [inlined]
 [3] macro expansion
   @ ~/.julia/packages/MarkovChainHammer/JX04A/test/test_Clustering.jl:15 [inlined]
 [4] macro expansion
   @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:679 [inlined]
Leicht Newman: Test Failed at /home/pkgeval/.julia/packages/MarkovChainHammer/JX04A/test/test_Clustering.jl:16
  Expression: all(community_cut1[2] .== [2, 3])

Stacktrace:
 [1] top-level scope
   @ ~/.julia/packages/MarkovChainHammer/JX04A/test/test_Clustering.jl:8
 [2] macro expansion
   @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1771 [inlined]
 [3] macro expansion
   @ ~/.julia/packages/MarkovChainHammer/JX04A/test/test_Clustering.jl:16 [inlined]
 [4] macro expansion
   @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:679 [inlined]
Test Summary: | Pass  Fail  Total   Time
Leicht Newman |   10     2     12  18.1s
RNG of the outermost testset: Xoshiro(0x1fe117b804676271, 0xffad3c6eb0b8f26b, 0x4d1b74ebb6a6417f, 0xc620c1ebf4fff184, 0x0b5763125ad11bc9)
ERROR: LoadError: Some tests did not pass: 10 passed, 2 failed, 0 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/MarkovChainHammer/JX04A/test/test_Clustering.jl:6
in expression starting at /home/pkgeval/.julia/packages/MarkovChainHammer/JX04A/test/runtests.jl:4

Testing failed after 162.85s

ERROR: LoadError: Package MarkovChainHammer errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486
  [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined]
  [8] #test#81
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:307
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:328
 [12] _start()
    @ Base ./client.jl:560
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 499.23s: package has test failures