Package evaluation of GAFramework on Julia 1.12.0-DEV.2044 (c78016e4dc*) started at 2025-02-25T21:58:54.794


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.32s


################################################################################
# Installation
#

Installing GAFramework...
   Resolving package versions...
   Installed Requires ──── v1.3.0
   Installed FileIO ────── v1.16.6
   Installed GAFramework ─ v0.5.0
    Updating `~/.julia/environments/v1.12/Project.toml`
  [91ca9103] + GAFramework v0.5.0
    Updating `~/.julia/environments/v1.12/Manifest.toml`
  [5789e2e9] + FileIO v1.16.6
  [91ca9103] + GAFramework v0.5.0
  [ae029012] + Requires v1.3.0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.12.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.11.1+1
  [e37daf67] + LibGit2_jll v1.9.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2024.12.31
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [458c3c95] + OpenSSL_jll v3.0.16+0
  [bea87d4a] + SuiteSparse_jll v7.8.3+2
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.12.0+0
  [8e850ede] + nghttp2_jll v1.64.0+1
  [3f19e933] + p7zip_jll v17.5.0+2

Installation completed after 1.58s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
   6369.1 ms  ✓ TestEnv
  1 dependency successfully precompiled in 8 seconds. 25 already precompiled.

Precompiling package dependencies...

Precompilation completed after 42.72s


################################################################################
# Testing
#

     Testing GAFramework
      Status `/tmp/jl_WtKwtb/Project.toml`
  [5789e2e9] FileIO v1.16.6
  [91ca9103] GAFramework v0.5.0
  [9fa8497b] Future v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [9a3f8284] Random v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_WtKwtb/Manifest.toml`
  [5789e2e9] FileIO v1.16.6
  [91ca9103] GAFramework v0.5.0
  [ae029012] Requires v1.3.0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.12.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.11.1+1
  [e37daf67] LibGit2_jll v1.9.0+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2024.12.31
  [4536629a] OpenBLAS_jll v0.3.29+0
  [458c3c95] OpenSSL_jll v3.0.16+0
  [bea87d4a] SuiteSparse_jll v7.8.3+2
  [83775a58] Zlib_jll v1.3.1+2
  [8e850b90] libblastrampoline_jll v5.12.0+0
  [8e850ede] nghttp2_jll v1.64.0+1
  [3f19e933] p7zip_jll v17.5.0+2
     Testing Running tests...
ERROR: LoadError: TaskFailedException

    nested task error: BoundsError: attempt to access 1-element Vector{Nothing} at index [2]
    Stacktrace:
     [1] throw_boundserror(A::Vector{Nothing}, I::Tuple{Int64})
       @ Base ./essentials.jl:15
     [2] getindex
       @ ./essentials.jl:917 [inlined]
     [3] macro expansion
       @ ~/.julia/packages/GAFramework/LSkm5/src/ga.jl:20 [inlined]
     [4] (::GAFramework.var"#initializepop##2#initializepop##3"{GAFramework.var"#initializepop##4#initializepop##5"{NetalignModel, Vector{Nothing}, Vector{Random.MersenneTwister}, UnitRange{Int64}}})(tid::Int64; onethread::Bool)
       @ GAFramework ./threadingconstructs.jl:276
     [5] #initializepop##2
       @ ./threadingconstructs.jl:243 [inlined]
     [6] (::Base.Threads.var"#threading_run##0#threading_run##1"{GAFramework.var"#initializepop##2#initializepop##3"{GAFramework.var"#initializepop##4#initializepop##5"{NetalignModel, Vector{Nothing}, Vector{Random.MersenneTwister}, UnitRange{Int64}}}, Int64})()
       @ Base.Threads ./threadingconstructs.jl:177
Stacktrace:
  [1] threading_run(fun::GAFramework.var"#initializepop##2#initializepop##3"{GAFramework.var"#initializepop##4#initializepop##5"{NetalignModel, Vector{Nothing}, Vector{Random.MersenneTwister}, UnitRange{Int64}}}, static::Bool)
    @ Base.Threads ./threadingconstructs.jl:196
  [2] macro expansion
    @ ./threadingconstructs.jl:213 [inlined]
  [3] initializepop(model::NetalignModel, npop::Int64, nelites::Int64, rng::Random.MersenneTwister, sortpop::Bool)
    @ GAFramework ~/.julia/packages/GAFramework/LSkm5/src/ga.jl:18
  [4] initializepop
    @ ~/.julia/packages/GAFramework/LSkm5/src/ga.jl:10 [inlined]
  [5] GAState(model::NetalignModel; ngen::Int64, npop::Int64, elite_fraction::Float64, params::Dict{Symbol, Int64}, rng::Random.MersenneTwister)
    @ GAFramework ~/.julia/packages/GAFramework/LSkm5/src/ga.jl:56
  [6] test_na1()
    @ Main ~/.julia/packages/GAFramework/LSkm5/test/runtests.jl:77
  [7] top-level scope
    @ ~/.julia/packages/GAFramework/LSkm5/test/runtests.jl:98
  [8] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:308
  [9] top-level scope
    @ none:6
 [10] eval(m::Module, e::Any)
    @ Core ./boot.jl:488
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:294
 [12] _start()
    @ Base ./client.jl:560
in expression starting at /home/pkgeval/.julia/packages/GAFramework/LSkm5/test/runtests.jl:98

Testing failed after 31.43s

ERROR: LoadError: Package GAFramework errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486
  [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined]
  [8] #test#81
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:307
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:328
 [12] _start()
    @ Base ./client.jl:560
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 99.69s: package tests unexpectedly errored