Package evaluation of EvoDynamics on Julia 1.12.0-DEV.2044 (c78016e4dc*) started at 2025-02-26T00:00:21.427 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.7s ################################################################################ # Installation # Installing EvoDynamics... Resolving package versions... Installed RealDot ───────────────────── v0.1.0 Installed IrrationalConstants ───────── v0.2.4 Installed Crayons ───────────────────── v4.1.1 Installed Scratch ───────────────────── v1.2.1 Installed JLD2 ──────────────────────── v0.4.54 Installed XML2_jll ──────────────────── v2.13.6+1 Installed Rmath ─────────────────────── v0.8.0 Installed QuickHeaps ────────────────── v0.1.2 Installed ArnoldiMethod ─────────────── v0.4.0 Installed HypergeometricFunctions ───── v0.3.27 Installed JSON ──────────────────────── v0.21.4 Installed StatsFuns ─────────────────── v1.3.2 Installed Preferences ───────────────── v1.4.3 Installed PtrArrays ─────────────────── v1.3.0 Installed TableTraits ───────────────── v1.0.1 Installed PrettyTables ──────────────── v2.4.0 Installed LoggingExtras ─────────────── v1.1.0 Installed Inflate ───────────────────── v0.1.5 Installed BitFlags ──────────────────── v0.1.9 Installed SpecialFunctions ──────────── v2.5.0 Installed Agents ────────────────────── v5.17.2 Installed SimpleBufferStream ────────── v1.2.0 Installed SentinelArrays ────────────── v1.4.8 Installed Parsers ───────────────────── v2.8.1 Installed SimpleWeightedGraphs ──────── v1.4.0 Installed DataAPI ───────────────────── v1.16.0 Installed PooledArrays ──────────────── v1.4.3 Installed PDMats ────────────────────── v0.11.32 Installed InlineStrings ─────────────── v1.4.3 Installed Tables ────────────────────── v1.12.0 Installed EvoDynamics ───────────────── v0.17.0 Installed StaticGraphs ──────────────── v0.3.0 Installed StringEncodings ───────────── v0.3.7 Installed ConcurrentUtilities ───────── v2.5.0 Installed ProgressMeter ─────────────── v1.10.2 Installed JLLWrappers ───────────────── v1.7.0 Installed StaticArraysCore ──────────── v1.4.3 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed ArrayTools ────────────────── v0.2.7 Installed NearestNeighbors ──────────── v0.4.21 Installed StaticArrays ──────────────── v1.9.12 Installed PrecompileTools ───────────── v1.2.1 Installed DataValueInterfaces ───────── v1.0.0 Installed URIs ──────────────────────── v1.5.1 Installed OrderedCollections ────────── v1.8.0 Installed WorkerUtilities ───────────── v1.6.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed TranscodingStreams ────────── v0.11.3 Installed InvertedIndices ───────────── v1.3.1 Installed SpatialIndexing ───────────── v0.1.6 Installed OpenSSL ───────────────────── v1.4.3 Installed HTTP ──────────────────────── v1.10.15 Installed FilePathsBase ─────────────── v0.9.23 Installed FillArrays ────────────────── v1.13.0 Installed QuadGK ────────────────────── v2.11.2 Installed Reexport ──────────────────── v1.2.2 Installed FileIO ────────────────────── v1.16.6 Installed LightOSM ──────────────────── v0.2.11 Installed Graphs ────────────────────── v1.12.0 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed MbedTLS ───────────────────── v1.1.9 Installed Statistics ────────────────── v1.11.1 Installed RandomNumbers ─────────────── v1.6.0 Installed WeakRefStrings ────────────── v1.4.2 Installed DataStructures ────────────── v0.18.20 Installed LogExpFunctions ───────────── v0.3.29 Installed Requires ──────────────────── v1.3.0 Installed Quaternions ───────────────── v0.7.6 Installed MetaGraphs ────────────────── v0.7.2 Installed DataFrames ────────────────── v1.7.0 Installed MbedTLS_jll ───────────────── v2.28.6+1 Installed StatsAPI ──────────────────── v1.7.0 Installed AliasTables ───────────────── v1.1.3 Installed MacroTools ────────────────── v0.5.15 Installed Rotations ─────────────────── v1.7.1 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed UnPack ────────────────────── v1.0.2 Installed Compat ────────────────────── v4.16.0 Installed Parameters ────────────────── v0.12.3 Installed LightXML ──────────────────── v0.9.1 Installed Distributions ─────────────── v0.25.117 Installed CommonSolve ───────────────── v0.2.4 Installed CodecZlib ─────────────────── v0.7.8 Installed Distances ─────────────────── v0.10.12 Installed SimpleTraits ──────────────── v0.9.4 Installed StringManipulation ────────── v0.4.1 Installed Missings ──────────────────── v1.2.0 Installed SortingAlgorithms ─────────── v1.2.1 Installed StatsBase ─────────────────── v0.33.21 Installed ExceptionUnwrapping ───────── v0.1.11 Installed YAML ──────────────────────── v0.4.12 Installed DocStringExtensions ───────── v0.9.3 Installed CSV ───────────────────────── v0.10.15 Installing 5 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact MbedTLS 2.1 MiB Installed artifact XML2 2.5 MiB Installed artifact Libiconv 1.9 MiB Updating `~/.julia/environments/v1.12/Project.toml` [c8768967] + EvoDynamics v0.17.0 Updating `~/.julia/environments/v1.12/Manifest.toml` ⌅ [46ada45e] + Agents v5.17.2 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 ⌅ [1dc0ca97] + ArrayTools v0.2.7 [d1d4a3ce] + BitFlags v0.1.9 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.4 [34da2185] + Compat v4.16.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.20 [e2d170a0] + DataValueInterfaces v1.0.0 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.117 [ffbed154] + DocStringExtensions v0.9.3 [c8768967] + EvoDynamics v0.17.0 [460bff9d] + ExceptionUnwrapping v0.1.11 [5789e2e9] + FileIO v1.16.6 [48062228] + FilePathsBase v0.9.23 [1a297f60] + FillArrays v1.13.0 [86223c79] + Graphs v1.12.0 [cd3eb016] + HTTP v1.10.15 [34004b35] + HypergeometricFunctions v0.3.27 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.54 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 ⌅ [d1922b25] 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[deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 11.53s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 7451.4 ms ✓ TestEnv 1 dependency successfully precompiled in 10 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 669.06s ################################################################################ # Testing # Testing EvoDynamics Status `/tmp/jl_S9sDEH/Project.toml` ⌅ [46ada45e] Agents v5.17.2 [31c24e10] Distributions v0.25.117 [c8768967] EvoDynamics v0.17.0 [e6cf234a] RandomNumbers v1.6.0 [90137ffa] StaticArrays v1.9.12 ⌅ [2913bbd2] StatsBase v0.33.21 [ddb6d928] YAML v0.4.12 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_S9sDEH/Manifest.toml` ⌅ [46ada45e] Agents v5.17.2 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 ⌅ [1dc0ca97] ArrayTools v0.2.7 [d1d4a3ce] BitFlags v0.1.9 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [38540f10] CommonSolve v0.2.4 [34da2185] Compat v4.16.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.20 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.117 [ffbed154] DocStringExtensions v0.9.3 [c8768967] EvoDynamics v0.17.0 [460bff9d] ExceptionUnwrapping v0.1.11 [5789e2e9] FileIO v1.16.6 [48062228] FilePathsBase v0.9.23 [1a297f60] FillArrays v1.13.0 [86223c79] Graphs v1.12.0 [cd3eb016] HTTP v1.10.15 [34004b35] HypergeometricFunctions v0.3.27 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] JLD2 v0.4.54 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 ⌅ [d1922b25] LightOSM v0.2.11 [9c8b4983] LightXML v0.9.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [1914dd2f] MacroTools v0.5.15 [739be429] MbedTLS v1.1.9 ⌅ [626554b9] MetaGraphs v0.7.2 [e1d29d7a] Missings v1.2.0 [b8a86587] NearestNeighbors v0.4.21 [4d8831e6] OpenSSL v1.4.3 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.1 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [94ee1d12] Quaternions v0.7.6 ⌅ [30b38841] QuickHeaps v0.1.2 [e6cf234a] RandomNumbers v1.6.0 [c1ae055f] RealDot v0.1.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.0 [79098fc4] Rmath v0.8.0 [6038ab10] Rotations v1.7.1 [6c6a2e73] Scratch v1.2.1 [91c51154] SentinelArrays v1.4.8 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.4 [47aef6b3] SimpleWeightedGraphs v1.4.0 [a2af1166] SortingAlgorithms v1.2.1 [d4ead438] SpatialIndexing v0.1.6 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.12 [1e83bf80] StaticArraysCore v1.4.3 [4c8beaf5] StaticGraphs v0.3.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.3.2 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.5.1 [3a884ed6] UnPack v1.0.2 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [ddb6d928] YAML v0.4.12 [94ce4f54] Libiconv_jll v1.18.0+0 [c8ffd9c3] MbedTLS_jll v2.28.6+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [02c8fc9c] XML2_jll v2.13.6+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Basic functions: Error During Test at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/simulation_tests.jl:1 Got exception outside of a @test UndefVarError: `model_parameters` not defined in `EvoDynamics` Stacktrace: [1] load_parameters(paramfile::String) @ EvoDynamics ~/.julia/packages/EvoDynamics/vL2rQ/src/load_params.jl:10 [2] top-level scope @ ~/.julia/packages/EvoDynamics/vL2rQ/test/simulation_tests.jl:2 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1771 [inlined] [4] macro expansion @ ~/.julia/packages/EvoDynamics/vL2rQ/test/simulation_tests.jl:2 [inlined] [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [6] top-level scope @ ~/.julia/packages/EvoDynamics/vL2rQ/test/runtests.jl:5 [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [8] top-level scope @ none:6 [9] eval(m::Module, e::Any) @ Core ./boot.jl:488 [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:294 [11] _start() @ Base ./client.jl:560 Test Summary: | Error Total Time Basic functions | 1 1 9.1s RNG of the outermost testset: Random.Xoshiro(0xf1ed5506a7c4231b, 0xf33707da191d18e6, 0xcc133fc28e3d1a0c, 0x642c9d28992227fb, 0x852af77dea3c07e6) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/simulation_tests.jl:1 in expression starting at /home/pkgeval/.julia/packages/EvoDynamics/vL2rQ/test/runtests.jl:5 Testing failed after 58.5s ERROR: LoadError: Package EvoDynamics errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:307 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 770.77s: package tests unexpectedly errored