Package evaluation of DynamicHMC on Julia 1.12.0-DEV.2044 (c78016e4dc*) started at 2025-02-25T23:22:31.994 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.55s ################################################################################ # Installation # Installing DynamicHMC... Resolving package versions... Installed GPUArraysCore ────────── v0.1.6 Installed ArgCheck ─────────────── v2.4.0 Installed IrrationalConstants ──── v0.2.4 Installed Adapt ────────────────── v4.2.0 Installed TransmuteDims ────────── v0.1.16 Installed Preferences ──────────── v1.4.3 Installed TensorCast ───────────── v0.4.8 Installed ProgressMeter ────────── v1.10.2 Installed StaticArraysCore ─────── v1.4.3 Installed LazyStack ────────────── v0.1.3 Installed StaticArrays ─────────── v1.9.12 Installed FillArrays ───────────── v1.13.0 Installed PrecompileTools ──────── v1.2.1 Installed ChainRulesCore ───────── v1.25.1 Installed DynamicHMC ───────────── v3.5.0 Installed StridedViews ─────────── v0.3.2 Installed Statistics ───────────── v1.11.1 Installed LogExpFunctions ──────── v0.3.29 Installed Requires ─────────────── v1.3.0 Installed PackageExtensionCompat ─ v1.0.2 Installed Strided ──────────────── v2.2.0 Installed Compat ───────────────── v4.16.0 Installed LogDensityProblems ───── v2.1.2 Installed MacroTools ───────────── v0.5.15 Installed TupleTools ───────────── v1.6.0 Installed DocStringExtensions ──── v0.9.3 Updating `~/.julia/environments/v1.12/Project.toml` [bbc10e6e] + DynamicHMC v3.5.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [79e6a3ab] + Adapt v4.2.0 [dce04be8] + ArgCheck v2.4.0 [d360d2e6] + ChainRulesCore v1.25.1 [34da2185] + Compat v4.16.0 [ffbed154] + DocStringExtensions v0.9.3 [bbc10e6e] + DynamicHMC v3.5.0 [1a297f60] + FillArrays v1.13.0 ⌅ [46192b85] + GPUArraysCore v0.1.6 [92d709cd] + IrrationalConstants v0.2.4 [1fad7336] + LazyStack v0.1.3 [6fdf6af0] + LogDensityProblems v2.1.2 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [65ce6f38] + PackageExtensionCompat v1.0.2 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.2 [ae029012] + Requires v1.3.0 [90137ffa] + StaticArrays v1.9.12 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [5e0ebb24] + Strided v2.2.0 [4db3bf67] + StridedViews v0.3.2 [02d47bb6] + TensorCast v0.4.8 [24ddb15e] + TransmuteDims v0.1.16 [9d95972d] + TupleTools v1.6.0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [8e850b90] + libblastrampoline_jll v5.12.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.36s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 6367.3 ms ✓ TestEnv 1 dependency successfully precompiled in 8 seconds. 25 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: JET Failed to precompile JET [c3a54625-cd67-489e-a8e7-0a5a0ff4e31b] to "/home/pkgeval/.julia/compiled/v1.12/JET/jl_XTQlLG". WARNING: Imported binding Compiler.istopfunction was undeclared at import time during import to JET. ERROR: LoadError: UndefVarError: `LineInfoNode` not defined in `JET` Stacktrace: [1] top-level scope @ ~/.julia/packages/JET/sQkqi/src/JETBase.jl:220 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [3] top-level scope @ ~/.julia/packages/JET/sQkqi/src/JET.jl:36 [4] include(mod::Module, _path::String) @ Base ./Base.jl:307 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3004 [6] top-level scope @ stdin:6 [7] eval(m::Module, e::Any) @ Core ./boot.jl:488 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [9] include_string @ ./loading.jl:2865 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [11] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/JET/sQkqi/src/JETBase.jl:220 in expression starting at /home/pkgeval/.julia/packages/JET/sQkqi/src/JET.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 421.25s ################################################################################ # Testing # Testing DynamicHMC Status `/tmp/jl_ECZsUj/Project.toml` [4c88cf16] Aqua v0.8.11 [dce04be8] ArgCheck v2.4.0 [ffbed154] DocStringExtensions v0.9.3 [bbc10e6e] DynamicHMC v3.5.0 [f6369f11] ForwardDiff v0.10.38 [09f84164] HypothesisTests v0.11.3 [c3a54625] JET v0.9.18 [6fdf6af0] LogDensityProblems v2.1.2 [feb245ec] LogDensityTestSuite v0.6.5 [2ab3a3ac] LogExpFunctions v0.3.29 [be115224] MCMCDiagnosticTools v0.3.14 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.4 [84d833dd] TransformVariables v0.8.14 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_ECZsUj/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.2.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.11 [dce04be8] ArgCheck v2.4.0 [d360d2e6] ChainRulesCore v1.25.1 [da1fd8a2] CodeTracking v1.3.6 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.5.8 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.20 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.117 [ffbed154] DocStringExtensions v0.9.3 [bbc10e6e] DynamicHMC v3.5.0 [1a297f60] FillArrays v1.13.0 [f6369f11] ForwardDiff v0.10.38 ⌅ [46192b85] GPUArraysCore v0.1.6 [34004b35] HypergeometricFunctions v0.3.27 [09f84164] HypothesisTests v0.11.3 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [c3a54625] JET v0.9.18 [692b3bcd] JLLWrappers v1.7.0 [aa1ae85d] JuliaInterpreter v0.9.41 [70703baa] JuliaSyntax v0.4.10 [1fad7336] LazyStack v0.1.3 [6fdf6af0] LogDensityProblems v2.1.2 [feb245ec] LogDensityTestSuite v0.6.5 [2ab3a3ac] LogExpFunctions v0.3.29 [6f1432cf] LoweredCodeUtils v3.1.0 [be115224] MCMCDiagnosticTools v0.3.14 [e80e1ace] MLJModelInterface v1.11.0 [1914dd2f] MacroTools v0.5.15 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.2 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [65ce6f38] PackageExtensionCompat v1.0.2 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [92933f4c] ProgressMeter v1.10.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.0 [79098fc4] Rmath v0.8.0 [f2b01f46] Roots v2.2.5 [30f210dd] ScientificTypesBase v3.0.0 [ed01d8cd] Sobol v1.5.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.12 [1e83bf80] StaticArraysCore v1.4.3 [64bff920] StatisticalTraits v3.4.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.3.2 [5e0ebb24] Strided v2.2.0 [4db3bf67] StridedViews v0.3.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [02d47bb6] TensorCast v0.4.8 [84d833dd] TransformVariables v0.8.14 [24ddb15e] TransmuteDims v0.1.16 [9d95972d] TupleTools v1.6.0 [3a884ed6] UnPack v1.0.2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time simulated meancov | 2 2 9.6s Test Summary: | Pass Total Time directions | 2 2 0.2s Test Summary: | Pass Total Time dummy adjacent tree full | 17 17 1.7s Test Summary: | Pass Total Time dummy adjacent tree turning | 15 15 0.7s Test Summary: | Pass Total Time dummy adjacent tree divergent | 13 13 0.9s Test Summary: | Pass Total Time dummy adjacent tree full backward | 29 29 0.3s Test Summary: | Pass Total Time dummy sampled tree | 27 27 0.3s Test Summary: | Pass Total Time transition calculations consistency check | 190527 190527 0.9s Test Summary: | Pass Total Time detailed balance | 1813168 1813168 3.9s Test Summary: | Pass Total Time Gaussian KE full | 400 400 34.4s Test Summary: | Pass Total Time Gaussian KE diagonal | 400 400 17.8s Test Summary: | Pass Total Time phasepoint internal consistency | 23 23 6.0s Test Summary: | Pass Total Time leapfrog calculation | 205 205 2.3s Test Summary: | Pass Total Time leapfrog Hamiltonian invariance | 1000 1000 0.5s Test Summary: | Pass Total Time leapfrog back and forth | 2200 2200 1.2s Test Summary: | Pass Total Time PhasePoint building blocks and infinite values | 9 9 1.3s Test Summary: | Pass Total Time Hamiltonian and KE printing | 3 3 0.8s Test Summary: | Pass Total Time unit normal simple HMC | 2 2 1.8s Test Summary: | Pass Total Time random booleans | 12 12 0.3s Test Summary: | Pass Total Time low-level turn statistics | 3 3 1.0s Test Summary: | Pass Total Time low-level visited statistics | 3 3 0.3s Test Summary: | Pass Total Time unconditional divergence | 4 4 1.4s Test Summary: | Pass Total Time normal NUTS HMC transition mean and cov | 20 20 4.0s Test Summary: | Pass Total Time stepsize general rootfinding | 7 7 0.3s Test Summary: | Pass Total Time dual averaging far | 4 4 0.4s Test Summary: | Pass Total Time dual averaging close | 1 1 0.0s Test Summary: | Pass Total Time dual averaging far and noisy | 1 1 0.0s Test Summary: | Pass Total Time fixed stepsize sanity checks | 3 3 0.0s Test Summary: | Pass Total Time find reasonable stepsize - random H, z | 100 100 0.0s Test Summary: | Pass Total Time error for non-finite initial density | 1 1 0.0s Test Summary: | Pass Total Time printing | 2 2 0.8s Test Summary: | Pass Total Time mcmc | 11 11 12.6s Test Summary: | Pass Total Time robust U-turn tests | 1 1 14.3s Test Summary: | Pass Total Time posterior accessors sanity checks | 2 2 1.6s Test Summary: | Pass Total Time summarize tree statistics | 15 15 5.0s Test Summary: | Pass Total Time log acceptance ratios | 2 2 1.1s Test Summary: | Pass Total Time leapfrog trajectory | 3 3 4.2s Test Summary: | Pass Total Time NUTS tests with random normal | 84 84 49.3s Test Summary: | Pass Total Time NUTS tests with specific normal distributions | 40 40 17.6s Test Summary: | Pass Total Time NUTS tests with mixtures | 6 6 6.7s Test Summary: | Pass Total Time NUTS tests with heavier tails and skewness | 16 16 26.3s Precompiling packages... Info Given JET was explicitly requested, output will be shown live  WARNING: Imported binding Compiler.istopfunction was undeclared at import time during import to JET. ERROR: LoadError: UndefVarError: `LineInfoNode` not defined in `JET` Stacktrace:  [1] top-level scope  @ ~/.julia/packages/JET/sQkqi/src/JETBase.jl:220  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:308  [3] top-level scope  @ ~/.julia/packages/JET/sQkqi/src/JET.jl:36  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:307  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3004  [6] top-level scope  @ stdin:6  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:488  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2855  [9] include_string  @ ./loading.jl:2865 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:326  [11] _start()  @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/JET/sQkqi/src/JETBase.jl:220 in expression starting at /home/pkgeval/.julia/packages/JET/sQkqi/src/JET.jl:1 in expression starting at stdin:6 ✗ JET 0 dependencies successfully precompiled in 16 seconds. 35 already precompiled. static analysis with JET.jl: Error During Test at /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/test/runtests.jl:46 Got exception outside of a @test The following 1 direct dependency failed to precompile: JET Failed to precompile JET [c3a54625-cd67-489e-a8e7-0a5a0ff4e31b] to "/home/pkgeval/.julia/compiled/v1.12/JET/jl_2y8hhu". WARNING: Imported binding Compiler.istopfunction was undeclared at import time during import to JET. ERROR: LoadError: UndefVarError: `LineInfoNode` not defined in `JET` Stacktrace: [1] top-level scope @ ~/.julia/packages/JET/sQkqi/src/JETBase.jl:220 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:308 [3] top-level scope @ ~/.julia/packages/JET/sQkqi/src/JET.jl:36 [4] include(mod::Module, _path::String) @ Base ./Base.jl:307 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3004 [6] top-level scope @ stdin:6 [7] eval(m::Module, e::Any) @ Core ./boot.jl:488 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2855 [9] include_string @ ./loading.jl:2865 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [11] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/JET/sQkqi/src/JETBase.jl:220 in expression starting at /home/pkgeval/.julia/packages/JET/sQkqi/src/JET.jl:1 in expression starting at stdin: Test Summary: | Error Total Time static analysis with JET.jl | 1 1 16.4s RNG of the outermost testset: Xoshiro(0xd6cb138c29a1bc37, 0x4a41944b964d2e2d, 0xd4b4614cb911f439, 0x1ff97df895b575db, 0xbce828baa1d944d8) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/test/runtests.jl:46 Testing failed after 305.6s ERROR: LoadError: Package DynamicHMC errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:307 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 759.48s: package fails to precompile