Package evaluation of BioVossEncoder on Julia 1.12.0-DEV.2044 (c78016e4dc*) started at 2025-02-25T22:03:55.268


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.79s


################################################################################
# Installation
#

Installing BioVossEncoder...
   Resolving package versions...
   Installed Twiddle ───────── v1.1.2
   Installed BioSymbols ────── v5.1.3
   Installed Preferences ───── v1.4.3
   Installed PrecompileTools ─ v1.2.1
   Installed BioSequences ──── v3.4.1
   Installed BioVossEncoder ── v0.6.0
    Updating `~/.julia/environments/v1.12/Project.toml`
  [e7894126] + BioVossEncoder v0.6.0
    Updating `~/.julia/environments/v1.12/Manifest.toml`
  [7e6ae17a] + BioSequences v3.4.1
  [3c28c6f8] + BioSymbols v5.1.3
  [e7894126] + BioVossEncoder v0.6.0
  [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [7200193e] + Twiddle v1.1.2
  [ade2ca70] + Dates v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [fa267f1f] + TOML v1.0.3
  [4ec0a83e] + Unicode v1.11.0

Installation completed after 1.71s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
   6815.8 ms  ✓ TestEnv
  1 dependency successfully precompiled in 9 seconds. 25 already precompiled.

Precompiling package dependencies...
ERROR: LoadError: The following 1 direct dependency failed to precompile:

JET 

Failed to precompile JET [c3a54625-cd67-489e-a8e7-0a5a0ff4e31b] to "/home/pkgeval/.julia/compiled/v1.12/JET/jl_XESFFF".
WARNING: Imported binding Compiler.istopfunction was undeclared at import time during import to JET.
ERROR: LoadError: UndefVarError: `LineInfoNode` not defined in `JET`
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/JET/sQkqi/src/JETBase.jl:220
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:308
  [3] top-level scope
    @ ~/.julia/packages/JET/sQkqi/src/JET.jl:36
  [4] include(mod::Module, _path::String)
    @ Base ./Base.jl:307
  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3004
  [6] top-level scope
    @ stdin:6
  [7] eval(m::Module, e::Any)
    @ Core ./boot.jl:488
  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2855
  [9] include_string
    @ ./loading.jl:2865 [inlined]
 [10] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:326
 [11] _start()
    @ Base ./client.jl:560
in expression starting at /home/pkgeval/.julia/packages/JET/sQkqi/src/JETBase.jl:220
in expression starting at /home/pkgeval/.julia/packages/JET/sQkqi/src/JET.jl:1
in expression starting at stdin:
in expression starting at /PkgEval.jl/scripts/precompile.jl:37

Precompilation failed after 176.39s



################################################################################
# Testing
#

     Testing BioVossEncoder
      Status `/tmp/jl_vgiHYn/Project.toml`
  [4c88cf16] Aqua v0.8.11
  [7e6ae17a] BioSequences v3.4.1
  [e7894126] BioVossEncoder v0.6.0
  [c3a54625] JET v0.9.18
  [f8b46487] TestItemRunner v1.1.0
  [1c621080] TestItems v1.0.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_vgiHYn/Manifest.toml`
  [4c88cf16] Aqua v0.8.11
  [7e6ae17a] BioSequences v3.4.1
  [3c28c6f8] BioSymbols v5.1.3
  [e7894126] BioVossEncoder v0.6.0
  [da1fd8a2] CodeTracking v1.3.6
  [34da2185] Compat v4.16.0
  [c3a54625] JET v0.9.18
  [aa1ae85d] JuliaInterpreter v0.9.41
  [70703baa] JuliaSyntax v0.4.10
  [6f1432cf] LoweredCodeUtils v3.1.0
  [1914dd2f] MacroTools v0.5.15
  [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [f8b46487] TestItemRunner v1.1.0
  [1c621080] TestItems v1.0.0
  [7200193e] Twiddle v1.1.2
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.12.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [deac9b47] LibCURL_jll v8.11.1+1
  [e37daf67] LibGit2_jll v1.9.0+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2024.12.31
  [458c3c95] OpenSSL_jll v3.0.16+0
  [83775a58] Zlib_jll v1.3.1+2
  [8e850ede] nghttp2_jll v1.64.0+1
  [3f19e933] p7zip_jll v17.5.0+2
     Testing Running tests...
Precompiling packages...
Info Given JET was explicitly requested, output will be shown live 
WARNING: Imported binding Compiler.istopfunction was undeclared at import time during import to JET.
ERROR: LoadError: UndefVarError: `LineInfoNode` not defined in `JET`
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/JET/sQkqi/src/JETBase.jl:220
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:308
  [3] top-level scope
    @ ~/.julia/packages/JET/sQkqi/src/JET.jl:36
  [4] include(mod::Module, _path::String)
    @ Base ./Base.jl:307
  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3004
  [6] top-level scope
    @ stdin:6
  [7] eval(m::Module, e::Any)
    @ Core ./boot.jl:488
  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2855
  [9] include_string
    @ ./loading.jl:2865 [inlined]
 [10] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:326
 [11] _start()
    @ Base ./client.jl:560
in expression starting at /home/pkgeval/.julia/packages/JET/sQkqi/src/JETBase.jl:220
in expression starting at /home/pkgeval/.julia/packages/JET/sQkqi/src/JET.jl:1
in expression starting at stdin:6
           ✗ JET
  0 dependencies successfully precompiled in 11 seconds. 35 already precompiled.

ERROR: LoadError: The following 1 direct dependency failed to precompile:

JET 

Failed to precompile JET [c3a54625-cd67-489e-a8e7-0a5a0ff4e31b] to "/home/pkgeval/.julia/compiled/v1.12/JET/jl_v5acho".
WARNING: Imported binding Compiler.istopfunction was undeclared at import time during import to JET.
ERROR: LoadError: UndefVarError: `LineInfoNode` not defined in `JET`
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/JET/sQkqi/src/JETBase.jl:220
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:308
  [3] top-level scope
    @ ~/.julia/packages/JET/sQkqi/src/JET.jl:36
  [4] include(mod::Module, _path::String)
    @ Base ./Base.jl:307
  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3004
  [6] top-level scope
    @ stdin:6
  [7] eval(m::Module, e::Any)
    @ Core ./boot.jl:488
  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2855
  [9] include_string
    @ ./loading.jl:2865 [inlined]
 [10] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:326
 [11] _start()
    @ Base ./client.jl:560
in expression starting at /home/pkgeval/.julia/packages/JET/sQkqi/src/JETBase.jl:220
in expression starting at /home/pkgeval/.julia/packages/JET/sQkqi/src/JET.jl:1
in expression starting at stdin:
in expression starting at /home/pkgeval/.julia/packages/BioVossEncoder/WfcxF/test/runtests.jl:48
in expression starting at /home/pkgeval/.julia/packages/BioVossEncoder/WfcxF/test/runtests.jl:1

Testing failed after 123.52s

ERROR: LoadError: Package BioVossEncoder errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486
  [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined]
  [8] #test#81
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:307
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:328
 [12] _start()
    @ Base ./client.jl:560
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 327.26s: package fails to precompile