Package evaluation to load YAXArrays on Julia 1.13.0-DEV.1324 (c1d413cf8a*) started at 2025-10-17T23:51:21.472 ################################################################################ # Set-up # Set-up completed after 0.1s ################################################################################ # Installation # Installing YAXArrays... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [c21b50f5] + YAXArrays v0.7.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [fbe9abb3] + AWS v1.97.0 [1c724243] + AWSS3 v0.11.4 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.21.0 [31f734f8] + ArrowTypes v2.3.0 [a9b6321e] + Atomix v1.1.2 [13072b0f] + AxisAlgorithms v1.1.0 [d1d4a3ce] + BitFlags v0.1.9 [a74b3585] + Blosc v0.7.3 [179af706] + CFTime v0.2.4 [d360d2e6] + ChainRulesCore v1.26.0 [0b6fb165] + ChunkCodecCore v1.0.0 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [6309b1aa] + CodecInflate64 v0.1.3 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [5060bff5] + ConcurrentCollections v0.1.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [88cd18e8] + ConsoleProgressMonitor v0.1.2 [187b0558] + ConstructionBase v1.6.0 [d58978e5] + Dagger v0.19.2 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [b342263e] + DateTimes64 v1.0.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.9 [0703355e] + DimensionalData v0.29.24 [2d4b2e14] + DiskArrayEngine v0.2.5 [fcd2136c] + DiskArrayTools v0.1.12 [3c3547ce] + DiskArrays v0.4.17 [fab6aee4] + DistributedNext v1.1.0 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [411431e0] + Extents v0.1.6 [8f5d6c58] + EzXML v1.2.3 [9aa1b823] + FastClosures v0.3.2 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.14.0 [6a86dc24] + FiniteDiff v2.29.0 [f6369f11] + ForwardDiff v1.2.2 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [bc5e4493] + GitHub v5.10.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.1 [cd3eb016] + HTTP v1.10.19 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [d25df0c9] + Inflate v0.1.5 [83e8ac13] + IniFile v0.5.1 [0c81fc1b] + InputBuffers v1.1.1 [18e54dd8] + IntegerMathUtils v0.1.3 [85a1e053] + Interfaces v0.3.2 ⌅ [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [b6b21f68] + Ipopt v1.11.0 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [ae98c720] + Jieko v0.2.1 [63c18a36] + KernelAbstractions v0.9.38 [5be7bae1] + LBFGSB v0.4.1 [8ac3fa9e] + LRUCache v1.6.2 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 [d3d80556] + LineSearches v7.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.9 [f9f48841] + MemPool v0.4.13 [e1d29d7a] + Missings v1.2.0 [78c3b35d] + Mocking v0.8.1 [2e0e35c7] + Moshi v0.3.7 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 [a15396b6] + OnlineStats v1.7.2 [925886fa] + OnlineStatsBase v1.7.1 [4d8831e6] + OpenSSL v1.5.0 [429524aa] + Optim v1.13.2 ⌅ [7f7a1694] + Optimization v4.8.0 ⌅ [bca83a33] + OptimizationBase v2.14.0 ⌃ [36348300] + OptimizationOptimJL v0.4.5 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [fad6cfc8] + ParallelUtilities v0.8.6 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [27ebfcd6] + Primes v0.5.7 [33c8b6b6] + ProgressLogging v0.1.5 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.39.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [20febd7b] + Retry v0.4.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [0bca4576] + SciMLBase v2.121.1 [c0aeaf25] + SciMLOperators v1.9.0 [53ae85a6] + SciMLStructures v1.7.0 [7e506255] + ScopedValues v1.5.0 [efcf1570] + Setfield v1.1.2 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.5 [2133526b] + SodiumSeal v0.1.1 [a2af1166] + SortingAlgorithms v1.2.2 [9f842d2f] + SparseConnectivityTracer v1.1.1 [0a514795] + SparseMatrixColorings v0.4.22 [276daf66] + SpecialFunctions v2.6.1 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [2da68c74] + SymDict v0.3.0 [2efcf032] + SymbolicIndexingInterface v0.3.46 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [ed4db957] + TaskLocalValues v0.1.3 [5d786b92] + TerminalLoggers v0.1.7 [a526e669] + TimespanLogging v0.1.1 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.0 [bbac0a1f] + WeightedOnlineStats v0.6.3 [efce3f68] + WoodburyMatrices v1.0.0 [228000da] + XMLDict v0.4.1 [90b8fcef] + YAXArrayBase v0.7.6 [c21b50f5] + YAXArrays v0.7.0 [0a941bbe] + Zarr v0.9.5 [49080126] + ZipArchives v2.5.1 [ae81ac8f] + ASL_jll v0.1.3+0 [0b7ba130] + Blosc_jll v1.21.7+0 ⌃ [e33a78d0] + Hwloc_jll v2.12.1+0 [9cc047cb] + Ipopt_jll v300.1400.1900+0 [81d17ec3] + L_BFGS_B_jll v3.0.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [d00139f3] + METIS_jll v5.1.3+0 [d7ed1dd3] + MUMPS_seq_jll v500.800.100+0 [c8ffd9c3] + MbedTLS_jll v2.28.10+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [319450e9] + SPRAL_jll v2025.5.20+0 [02c8fc9c] + XML2_jll v2.15.0+0 [a9144af2] + libsodium_jll v1.0.21+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 12.16s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... Precompilation completed after 16.67s ################################################################################ # Loading # Loading YAXArrays... WARNING: Imported binding Threads.inttypes was undeclared at import time during import to UnsafeAtomics. WARNING: Imported binding Threads.llvmtypes was undeclared at import time during import to UnsafeAtomics. ERROR: LoadError: UndefVarError: `inttypes` not defined in `ConcurrentCollections.Implementations.UnsafeAtomics` Suggestion: this global was defined as `Base.Threads.inttypes` but not assigned a value. Stacktrace: [1] top-level scope @ ~/.julia/packages/ConcurrentCollections/QgIM8/src/UnsafeAtomics.jl:41 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [3] top-level scope @ ~/.julia/packages/ConcurrentCollections/QgIM8/src/ConcurrentCollections.jl:61 [4] include(mod::Module, _path::String) @ Base ./Base.jl:309 [5] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2777 [6] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2536 [7] macro expansion @ ./loading.jl:2464 [inlined] [8] macro expansion @ ./lock.jl:376 [inlined] [9] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2428 [10] require @ ./loading.jl:2404 [inlined] [11] eval_import_path @ ./module.jl:36 [inlined] [12] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [13] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [14] top-level scope @ ~/.julia/packages/MemPool/xbec0/src/MemPool.jl:9 [15] include(mod::Module, _path::String) @ Base ./Base.jl:309 [16] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2777 [17] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2536 [18] macro expansion @ ./loading.jl:2464 [inlined] [19] macro expansion @ ./lock.jl:376 [inlined] [20] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2428 [21] require @ ./loading.jl:2404 [inlined] [22] eval_import_path @ ./module.jl:36 [inlined] [23] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr) @ Base ./module.jl:111 [24] top-level scope @ ~/.julia/packages/Dagger/0Eq6X/src/Dagger.jl:7 [25] include(mod::Module, _path::String) @ Base ./Base.jl:309 [26] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2777 [27] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2536 [28] macro expansion @ ./loading.jl:2464 [inlined] [29] macro expansion @ ./lock.jl:376 [inlined] [30] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2428 [31] require @ ./loading.jl:2404 [inlined] [32] eval_import_path @ ./module.jl:36 [inlined] [33] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [34] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [35] top-level scope @ ~/.julia/packages/DiskArrayEngine/eNNsn/src/daggerrunner.jl:1 [36] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [37] top-level scope @ ~/.julia/packages/DiskArrayEngine/eNNsn/src/DiskArrayEngine.jl:15 [38] include(mod::Module, _path::String) @ Base ./Base.jl:309 [39] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2777 [40] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2536 [41] macro expansion @ ./loading.jl:2464 [inlined] [42] macro expansion @ ./lock.jl:376 [inlined] [43] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2428 [44] require @ ./loading.jl:2404 [inlined] [45] eval_import_path @ ./module.jl:36 [inlined] [46] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr) @ Base ./module.jl:111 [47] top-level scope @ ~/.julia/packages/YAXArrays/cl9qV/src/DAT/xmap.jl:8 [48] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [49] top-level scope @ ~/.julia/packages/YAXArrays/cl9qV/src/YAXArrays.jl:41 [50] include(mod::Module, _path::String) @ Base ./Base.jl:309 [51] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2777 [52] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2536 [53] macro expansion @ ./loading.jl:2464 [inlined] [54] macro expansion @ ./lock.jl:376 [inlined] [55] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2428 [56] require @ ./loading.jl:2404 [inlined] [57] eval_import_path @ ./module.jl:36 [inlined] [58] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [59] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [60] top-level scope @ none:1 [61] eval(m::Module, e::Any) @ Core ./boot.jl:489 [62] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [63] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/ConcurrentCollections/QgIM8/src/UnsafeAtomics.jl:1 in expression starting at /home/pkgeval/.julia/packages/ConcurrentCollections/QgIM8/src/ConcurrentCollections.jl:1 in expression starting at /home/pkgeval/.julia/packages/MemPool/xbec0/src/MemPool.jl:1 in expression starting at /home/pkgeval/.julia/packages/Dagger/0Eq6X/src/Dagger.jl:1 in expression starting at /home/pkgeval/.julia/packages/DiskArrayEngine/eNNsn/src/daggerrunner.jl:1 in expression starting at /home/pkgeval/.julia/packages/DiskArrayEngine/eNNsn/src/DiskArrayEngine.jl:1 in expression starting at /home/pkgeval/.julia/packages/YAXArrays/cl9qV/src/DAT/xmap.jl:1 in expression starting at /home/pkgeval/.julia/packages/YAXArrays/cl9qV/src/YAXArrays.jl:1 Loading failed after 184.31s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using YAXArrays'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:611 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:526 [3] run(::Cmd) @ Base ./process.jl:523 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:309 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [7] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 235.68s: there were unidentified errors