Package evaluation to test SEQ2EXPdata on Julia 1.13.0-DEV.1324 (c1d413cf8a*) started at 2025-10-17T15:21:08.575 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 11.03s ################################################################################ # Installation # Installing SEQ2EXPdata... Resolving package versions... Installed SEQ2EXPdata ─ v1.0.1 Updating `~/.julia/environments/v1.13/Project.toml` [321b9d11] + SEQ2EXPdata v1.0.1 Updating `~/.julia/environments/v1.13/Manifest.toml` [321b9d11] + SEQ2EXPdata v1.0.1 Installation completed after 0.92s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4493.1 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompilation completed after 20.19s ################################################################################ # Testing # Testing SEQ2EXPdata Status `/tmp/jl_GWMcWz/Project.toml` [321b9d11] SEQ2EXPdata v1.0.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_GWMcWz/Manifest.toml` [321b9d11] SEQ2EXPdata v1.0.1 [2a0f44e3] Base64 v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.11.0 [8dfed614] Test v1.11.0 Testing Running tests... OnehotSEQ2EXP_Dataset: Error During Test at /home/pkgeval/.julia/packages/SEQ2EXPdata/RWhR3/test/test_onehot.jl:5 Got exception outside of a @test MethodError: no method matching sequences_to_tensor_auto(::Vector{SubString{String}}; T::DataType) The function `sequences_to_tensor_auto` exists, but no method is defined for this combination of argument types. Closest candidates are: sequences_to_tensor_auto(!Matched::AbstractVector{String}; T) @ Main ~/.julia/packages/SEQ2EXPdata/RWhR3/src/onehot_encode/encode.jl:182 Stacktrace: [1] OnehotSEQ2EXP_Dataset(raw_data::SEQ2EXP_Dataset{Float64}; trim::Bool) @ Main ~/.julia/packages/SEQ2EXPdata/RWhR3/src/onehot_encode/Onehot.jl:35 [2] OnehotSEQ2EXP_Dataset(raw_data::SEQ2EXP_Dataset{Float64}) @ Main ~/.julia/packages/SEQ2EXPdata/RWhR3/src/onehot_encode/Onehot.jl:28 [3] top-level scope @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/test_onehot.jl:7 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] [5] macro expansion @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/test_onehot.jl:12 [inlined] [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [7] top-level scope @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/runtests.jl:6 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] [9] macro expansion @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/runtests.jl:190 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [11] top-level scope @ none:6 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [14] _start() @ Base ./client.jl:577 OnehotSEQ2EXP_Dataset Accessors: Error During Test at /home/pkgeval/.julia/packages/SEQ2EXPdata/RWhR3/test/test_onehot.jl:29 Got exception outside of a @test MethodError: no method matching sequences_to_tensor_auto(::Vector{SubString{String}}; T::DataType) The function `sequences_to_tensor_auto` exists, but no method is defined for this combination of argument types. Closest candidates are: sequences_to_tensor_auto(!Matched::AbstractVector{String}; T) @ Main ~/.julia/packages/SEQ2EXPdata/RWhR3/src/onehot_encode/encode.jl:182 Stacktrace: [1] OnehotSEQ2EXP_Dataset(raw_data::SEQ2EXP_Dataset{Float64}; trim::Bool) @ Main ~/.julia/packages/SEQ2EXPdata/RWhR3/src/onehot_encode/Onehot.jl:35 [2] OnehotSEQ2EXP_Dataset(raw_data::SEQ2EXP_Dataset{Float64}) @ Main ~/.julia/packages/SEQ2EXPdata/RWhR3/src/onehot_encode/Onehot.jl:28 [3] top-level scope @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/test_onehot.jl:30 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] [5] macro expansion @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/test_onehot.jl:33 [inlined] [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [7] top-level scope @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/runtests.jl:6 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] [9] macro expansion @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/runtests.jl:190 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [11] top-level scope @ none:6 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [14] _start() @ Base ./client.jl:577 OnehotSEQ2EXP_Dataset trimming: Error During Test at /home/pkgeval/.julia/packages/SEQ2EXPdata/RWhR3/test/test_onehot.jl:61 Got exception outside of a @test MethodError: no method matching sequences_to_tensor_auto(::Vector{SubString{String}}; T::DataType) The function `sequences_to_tensor_auto` exists, but no method is defined for this combination of argument types. Closest candidates are: sequences_to_tensor_auto(!Matched::AbstractVector{String}; T) @ Main ~/.julia/packages/SEQ2EXPdata/RWhR3/src/onehot_encode/encode.jl:182 Stacktrace: [1] OnehotSEQ2EXP_Dataset(raw_data::SEQ2EXP_Dataset{Float64}; trim::Bool) @ Main ~/.julia/packages/SEQ2EXPdata/RWhR3/src/onehot_encode/Onehot.jl:35 [2] OnehotSEQ2EXP_Dataset(raw_data::SEQ2EXP_Dataset{Float64}) @ Main ~/.julia/packages/SEQ2EXPdata/RWhR3/src/onehot_encode/Onehot.jl:28 [3] top-level scope @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/test_onehot.jl:63 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] [5] macro expansion @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/test_onehot.jl:68 [inlined] [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [7] top-level scope @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/runtests.jl:6 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] [9] macro expansion @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/runtests.jl:190 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [11] top-level scope @ none:6 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [14] _start() @ Base ./client.jl:577 OnehotSEQ2EXP_Dataset prefix_offset: Error During Test at /home/pkgeval/.julia/packages/SEQ2EXPdata/RWhR3/test/test_onehot.jl:83 Got exception outside of a @test MethodError: no method matching sequences_to_tensor_auto(::Vector{SubString{String}}; T::DataType) The function `sequences_to_tensor_auto` exists, but no method is defined for this combination of argument types. Closest candidates are: sequences_to_tensor_auto(!Matched::AbstractVector{String}; T) @ Main ~/.julia/packages/SEQ2EXPdata/RWhR3/src/onehot_encode/encode.jl:182 Stacktrace: [1] OnehotSEQ2EXP_Dataset(raw_data::SEQ2EXP_Dataset{Float64}; trim::Bool) @ Main ~/.julia/packages/SEQ2EXPdata/RWhR3/src/onehot_encode/Onehot.jl:35 [2] OnehotSEQ2EXP_Dataset(raw_data::SEQ2EXP_Dataset{Float64}) @ Main ~/.julia/packages/SEQ2EXPdata/RWhR3/src/onehot_encode/Onehot.jl:28 [3] top-level scope @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/test_onehot.jl:84 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] [5] macro expansion @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/test_onehot.jl:87 [inlined] [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [7] top-level scope @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/runtests.jl:6 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] [9] macro expansion @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/runtests.jl:190 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [11] top-level scope @ none:6 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [14] _start() @ Base ./client.jl:577 get_prefix_offset accessor: Error During Test at /home/pkgeval/.julia/packages/SEQ2EXPdata/RWhR3/test/test_onehot.jl:94 Got exception outside of a @test MethodError: no method matching sequences_to_tensor_auto(::Vector{SubString{String}}; T::DataType) The function `sequences_to_tensor_auto` exists, but no method is defined for this combination of argument types. Closest candidates are: sequences_to_tensor_auto(!Matched::AbstractVector{String}; T) @ Main ~/.julia/packages/SEQ2EXPdata/RWhR3/src/onehot_encode/encode.jl:182 Stacktrace: [1] OnehotSEQ2EXP_Dataset(raw_data::SEQ2EXP_Dataset{Float64}; trim::Bool) @ Main ~/.julia/packages/SEQ2EXPdata/RWhR3/src/onehot_encode/Onehot.jl:35 [2] OnehotSEQ2EXP_Dataset(raw_data::SEQ2EXP_Dataset{Float64}) @ Main ~/.julia/packages/SEQ2EXPdata/RWhR3/src/onehot_encode/Onehot.jl:28 [3] top-level scope @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/test_onehot.jl:95 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] [5] macro expansion @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/test_onehot.jl:98 [inlined] [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [7] top-level scope @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/runtests.jl:6 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] [9] macro expansion @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/runtests.jl:190 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [11] top-level scope @ none:6 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [14] _start() @ Base ./client.jl:577 OnehotSEQ2EXP_Dataset getproperty X/Y: Error During Test at /home/pkgeval/.julia/packages/SEQ2EXPdata/RWhR3/test/test_onehot.jl:144 Got exception outside of a @test MethodError: no method matching sequences_to_tensor_auto(::Vector{SubString{String}}; T::DataType) The function `sequences_to_tensor_auto` exists, but no method is defined for this combination of argument types. Closest candidates are: sequences_to_tensor_auto(!Matched::AbstractVector{String}; T) @ Main ~/.julia/packages/SEQ2EXPdata/RWhR3/src/onehot_encode/encode.jl:182 Stacktrace: [1] OnehotSEQ2EXP_Dataset(raw_data::SEQ2EXP_Dataset{Float64}; trim::Bool) @ Main ~/.julia/packages/SEQ2EXPdata/RWhR3/src/onehot_encode/Onehot.jl:35 [2] OnehotSEQ2EXP_Dataset(raw_data::SEQ2EXP_Dataset{Float64}) @ Main ~/.julia/packages/SEQ2EXPdata/RWhR3/src/onehot_encode/Onehot.jl:28 [3] top-level scope @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/test_onehot.jl:145 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] [5] macro expansion @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/test_onehot.jl:148 [inlined] [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [7] top-level scope @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/runtests.jl:6 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] [9] macro expansion @ ~/.julia/packages/SEQ2EXPdata/RWhR3/test/runtests.jl:190 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [11] top-level scope @ none:6 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [14] _start() @ Base ./client.jl:577 Test Summary: | Pass Error Total Time SEQ2EXPdata.jl | 75 6 81 10.8s Basic Dataset Creation | 4 4 1.3s Dataset with Feature Names | 2 2 0.2s Dataset with Consensus | 2 2 0.5s Validation Tests | 3 3 0.0s Accessor Functions | 5 5 0.0s Consensus Function | 4 4 0.0s Display Test | 2 2 0.0s Utility Functions | 7 7 0.0s @seq2exp Macro Tests | 17 17 0.1s Type Conversion | 9 9 1.3s OnehotSEQ2EXP_Dataset | 1 1 4.8s OnehotSEQ2EXP_Dataset Accessors | 1 1 0.0s OnehotSEQ2EXP_Dataset trimming | 1 1 0.0s OnehotSEQ2EXP_Dataset prefix_offset | 1 1 0.0s get_prefix_offset accessor | 1 1 0.0s sequences_to_tensor DNA encoding | 10 10 1.0s sequences_to_tensor unknown base | 1 1 0.4s sequences_to_tensor protein encoding | 9 9 0.1s OnehotSEQ2EXP_Dataset getproperty X/Y | 1 1 0.0s RNG of the outermost testset: Random.Xoshiro(0xd4e40ffecdf78406, 0xf8d1f998664861fa, 0xb498d23b317ef1e8, 0x0e23cccbd455d796, 0xa950b182c6a44896) ERROR: LoadError: Some tests did not pass: 75 passed, 0 failed, 6 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/SEQ2EXPdata/RWhR3/test/runtests.jl:4 Testing failed after 20.95s ERROR: LoadError: Package SEQ2EXPdata errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2674 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2523 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:548 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:525 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 67.08s: package tests unexpectedly errored