Package evaluation to test RheaMetacycParser on Julia 1.13.0-DEV.1324 (c1d413cf8a*) started at 2025-10-17T19:56:04.442


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.07s


################################################################################
# Installation
#

Installing RheaMetacycParser...
   Resolving package versions...
   Installed HDF5 ─ v0.16.16
    Updating `~/.julia/environments/v1.13/Project.toml`
  [5dc06827] + RheaMetacycParser v0.1.0
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [6e4b80f9] + BenchmarkTools v1.6.2
  [e1450e63] + BufferedStreams v1.2.2
⌅ [babc4406] + COBREXA v1.5.1
  [523fee87] + CodecBzip2 v0.8.5
  [944b1d66] + CodecZlib v0.7.8
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.18.1
  [864edb3b] + DataStructures v0.19.1
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [f6a0035f] + DistributedData v0.2.0
  [ffbed154] + DocStringExtensions v0.9.5
  [f6369f11] + ForwardDiff v1.2.2
⌅ [f67ccb44] + HDF5 v0.16.16
  [615f187c] + IfElse v0.1.1
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
⌅ [682c06a0] + JSON v0.21.4
  [0f8b85d8] + JSON3 v1.14.3
  [4076af6c] + JuMP v1.29.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [23992714] + MAT v0.10.7
  [3da0fdf6] + MPIPreferences v0.1.11
  [1914dd2f] + MacroTools v0.5.16
  [b8f27783] + MathOptInterface v1.45.0
  [d8a4904e] + MutableArithmetics v1.6.6
  [77ba4419] + NaNMath v1.1.3
  [bac558e1] + OrderedCollections v1.8.1
  [69de0a69] + Parsers v2.8.3
⌅ [3bbf5609] + PikaParser v0.5.2
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [cbbcb084] + ReadableRegex v0.3.2
  [ae029012] + Requires v1.3.1
  [5dc06827] + RheaMetacycParser v0.1.0
⌅ [e5567a89] + SBML v1.4.4
  [276daf66] + SpecialFunctions v2.6.1
  [860ef19b] + StableRNGs v1.0.3
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [856f2bd8] + StructTypes v1.11.0
  [3bb67fe8] + TranscodingStreams v0.11.3
  [1986cc42] + Unitful v1.25.0
  [6e34b625] + Bzip2_jll v1.0.9+0
  [0234f1f7] + HDF5_jll v1.14.6+0
  [e33a78d0] + Hwloc_jll v2.12.2+0
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [7cb0a576] + MPICH_jll v4.3.1+0
  [f1f71cc9] + MPItrampoline_jll v5.5.4+0
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] + OpenMPI_jll v5.0.8+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [bb12108a] + SBML_jll v5.20.1+0
⌅ [02c8fc9c] + XML2_jll v2.13.9+0
  [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0
  [477f73a3] + libaec_jll v1.1.4+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.13.0
  [de0858da] + Printf v1.11.0
  [9abbd945] + Profile v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.16.0+0
  [e37daf67] + LibGit2_jll v1.9.1+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.9.9
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efcefdf7] + PCRE2_jll v10.46.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.67.1+0
  [3f19e933] + p7zip_jll v17.6.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
    Building HDF5 → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/114e20044677badbc631ee6fdc80a67920561a29/build.log`

Installation completed after 16.7s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 33.94s


################################################################################
# Testing
#

     Testing RheaMetacycParser
      Status `/tmp/jl_FIJEpn/Project.toml`
⌅ [babc4406] COBREXA v1.5.1
  [ffbed154] DocStringExtensions v0.9.5
  [cbbcb084] ReadableRegex v0.3.2
  [5dc06827] RheaMetacycParser v0.1.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_FIJEpn/Manifest.toml`
  [6e4b80f9] BenchmarkTools v1.6.2
  [e1450e63] BufferedStreams v1.2.2
⌅ [babc4406] COBREXA v1.5.1
  [523fee87] CodecBzip2 v0.8.5
  [944b1d66] CodecZlib v0.7.8
  [bbf7d656] CommonSubexpressions v0.3.1
  [34da2185] Compat v4.18.1
  [864edb3b] DataStructures v0.19.1
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [f6a0035f] DistributedData v0.2.0
  [ffbed154] DocStringExtensions v0.9.5
  [f6369f11] ForwardDiff v1.2.2
⌅ [f67ccb44] HDF5 v0.16.16
  [615f187c] IfElse v0.1.1
  [92d709cd] IrrationalConstants v0.2.6
  [692b3bcd] JLLWrappers v1.7.1
⌅ [682c06a0] JSON v0.21.4
  [0f8b85d8] JSON3 v1.14.3
  [4076af6c] JuMP v1.29.1
  [2ab3a3ac] LogExpFunctions v0.3.29
  [23992714] MAT v0.10.7
  [3da0fdf6] MPIPreferences v0.1.11
  [1914dd2f] MacroTools v0.5.16
  [b8f27783] MathOptInterface v1.45.0
  [d8a4904e] MutableArithmetics v1.6.6
  [77ba4419] NaNMath v1.1.3
  [bac558e1] OrderedCollections v1.8.1
  [69de0a69] Parsers v2.8.3
⌅ [3bbf5609] PikaParser v0.5.2
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.0
  [cbbcb084] ReadableRegex v0.3.2
  [ae029012] Requires v1.3.1
  [5dc06827] RheaMetacycParser v0.1.0
⌅ [e5567a89] SBML v1.4.4
  [276daf66] SpecialFunctions v2.6.1
  [860ef19b] StableRNGs v1.0.3
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [856f2bd8] StructTypes v1.11.0
  [3bb67fe8] TranscodingStreams v0.11.3
  [1986cc42] Unitful v1.25.0
  [6e34b625] Bzip2_jll v1.0.9+0
  [0234f1f7] HDF5_jll v1.14.6+0
  [e33a78d0] Hwloc_jll v2.12.2+0
  [94ce4f54] Libiconv_jll v1.18.0+0
  [7cb0a576] MPICH_jll v4.3.1+0
  [f1f71cc9] MPItrampoline_jll v5.5.4+0
  [9237b28f] MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] OpenMPI_jll v5.0.8+0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [bb12108a] SBML_jll v5.20.1+0
⌅ [02c8fc9c] XML2_jll v2.13.9+0
  [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0
  [477f73a3] libaec_jll v1.1.4+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.13.0
  [de0858da] Printf v1.11.0
  [9abbd945] Profile v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.16.0+0
  [e37daf67] LibGit2_jll v1.9.1+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.9.9
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.7+0
  [458c3c95] OpenSSL_jll v3.5.4+0
  [efcefdf7] PCRE2_jll v10.46.0+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.1+2
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850b90] libblastrampoline_jll v5.15.0+0
  [8e850ede] nghttp2_jll v1.67.1+0
  [3f19e933] p7zip_jll v17.6.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
ERROR: LoadError: ParseError:
# Error @ /home/pkgeval/.julia/packages/Unitful/HCJFR/src/logarithm.jl:127:5

Base. *(::MixedUnits, ::MixedUnits) =
#   └───────────────────────────────┘ ── extra tokens after end of expression
Stacktrace:
   [1] top-level scope
     @ ~/.julia/packages/Unitful/HCJFR/src/logarithm.jl:127
   [2] include(mapexpr::Function, mod::Module, _path::String)
     @ Base ./Base.jl:310
   [3] top-level scope
     @ ~/.julia/packages/Unitful/HCJFR/src/Unitful.jl:67
   [4] include(mod::Module, _path::String)
     @ Base ./Base.jl:309
   [5] __require_prelocked(pkg::Base.PkgId, env::String)
     @ Base ./loading.jl:2777
   [6] _require_prelocked(uuidkey::Base.PkgId, env::String)
     @ Base ./loading.jl:2536
   [7] macro expansion
     @ ./loading.jl:2464 [inlined]
   [8] macro expansion
     @ ./lock.jl:376 [inlined]
   [9] __require(into::Module, mod::Symbol)
     @ Base ./loading.jl:2428
  [10] require
     @ ./loading.jl:2404 [inlined]
  [11] eval_import_path
     @ ./module.jl:36 [inlined]
  [12] eval_import_path_all(at::Module, path::Expr, keyword::String)
     @ Base ./module.jl:60
  [13] _eval_using(to::Module, path::Expr)
     @ Base ./module.jl:137
  [14] top-level scope
     @ ~/.julia/packages/SBML/wqJog/src/SBML.jl:11
  [15] include(mod::Module, _path::String)
     @ Base ./Base.jl:309
  [16] __require_prelocked(pkg::Base.PkgId, env::String)
     @ Base ./loading.jl:2777
  [17] _require_prelocked(uuidkey::Base.PkgId, env::String)
     @ Base ./loading.jl:2536
  [18] macro expansion
     @ ./loading.jl:2464 [inlined]
  [19] macro expansion
     @ ./lock.jl:376 [inlined]
  [20] __require(into::Module, mod::Symbol)
     @ Base ./loading.jl:2428
  [21] require
     @ ./loading.jl:2404 [inlined]
  [22] eval_import_path
     @ ./module.jl:36 [inlined]
  [23] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)
     @ Base ./module.jl:111
  [24] top-level scope
     @ ~/.julia/packages/COBREXA/IheBW/src/COBREXA.jl:47
  [25] include(mod::Module, _path::String)
     @ Base ./Base.jl:309
  [26] __require_prelocked(pkg::Base.PkgId, env::String)
     @ Base ./loading.jl:2777
  [27] _require_prelocked(uuidkey::Base.PkgId, env::String)
     @ Base ./loading.jl:2536
  [28] macro expansion
     @ ./loading.jl:2464 [inlined]
  [29] macro expansion
     @ ./lock.jl:376 [inlined]
  [30] __require(into::Module, mod::Symbol)
     @ Base ./loading.jl:2428
  [31] require
     @ ./loading.jl:2404 [inlined]
  [32] eval_import_path
     @ ./module.jl:36 [inlined]
  [33] eval_import_path_all(at::Module, path::Expr, keyword::String)
     @ Base ./module.jl:60
  [34] _eval_using(to::Module, path::Expr)
     @ Base ./module.jl:137
  [35] top-level scope
     @ ~/.julia/packages/RheaMetacycParser/EFHMJ/src/RheaMetacycParser.jl:3
  [36] include(mod::Module, _path::String)
     @ Base ./Base.jl:309
  [37] __require_prelocked(pkg::Base.PkgId, env::String)
     @ Base ./loading.jl:2777
  [38] _require_prelocked(uuidkey::Base.PkgId, env::String)
     @ Base ./loading.jl:2536
  [39] macro expansion
     @ ./loading.jl:2464 [inlined]
  [40] macro expansion
     @ ./lock.jl:376 [inlined]
  [41] __require(into::Module, mod::Symbol)
     @ Base ./loading.jl:2428
  [42] require
     @ ./loading.jl:2404 [inlined]
  [43] eval_import_path
     @ ./module.jl:36 [inlined]
  [44] eval_import_path_all(at::Module, path::Expr, keyword::String)
     @ Base ./module.jl:60
  [45] _eval_using(to::Module, path::Expr)
     @ Base ./module.jl:137
  [46] top-level scope
     @ ~/.julia/packages/RheaMetacycParser/EFHMJ/test/runtests.jl:1
  [47] include(mapexpr::Function, mod::Module, _path::String)
     @ Base ./Base.jl:310
  [48] top-level scope
     @ none:6
  [49] eval(m::Module, e::Any)
     @ Core ./boot.jl:489
  [50] exec_options(opts::Base.JLOptions)
     @ Base ./client.jl:310
  [51] _start()
     @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Unitful/HCJFR/src/logarithm.jl:127
in expression starting at /home/pkgeval/.julia/packages/Unitful/HCJFR/src/Unitful.jl:1
in expression starting at /home/pkgeval/.julia/packages/SBML/wqJog/src/SBML.jl:1
in expression starting at /home/pkgeval/.julia/packages/COBREXA/IheBW/src/COBREXA.jl:1
in expression starting at /home/pkgeval/.julia/packages/RheaMetacycParser/EFHMJ/src/RheaMetacycParser.jl:1
in expression starting at /home/pkgeval/.julia/packages/RheaMetacycParser/EFHMJ/test/runtests.jl:1

Testing failed after 79.95s

ERROR: LoadError: Package RheaMetacycParser errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2674
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2523 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:548
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:525
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 161.1s: package tests unexpectedly errored