Package evaluation to load Kwant on Julia 1.13.0-DEV.1324 (c1d413cf8a*) started at 2025-10-17T18:09:49.212 ################################################################################ # Set-up # Set-up completed after 0.09s ################################################################################ # Installation # Installing Kwant... Resolving package versions... Installed Conda ── v1.10.2 Installed PyCall ─ v1.96.4 Updating `~/.julia/environments/v1.13/Project.toml` [ed3f9b50] + Kwant v0.1.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [8f4d0f93] + Conda v1.10.2 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [682c06a0] + JSON v0.21.4 [ed3f9b50] + Kwant v0.1.0 [b964fa9f] + LaTeXStrings v1.4.0 [1914dd2f] + MacroTools v0.5.16 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [438e738f] + PyCall v1.96.4 [d330b81b] + PyPlot v2.11.6 [189a3867] + Reexport v1.2.2 [10745b16] + Statistics v1.11.1 [81def892] + VersionParsing v1.3.0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Installation completed after 49.53s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 6351.3 ms ✓ PyPlot 5481.0 ms ✓ Kwant 2 dependencies successfully precompiled in 12 seconds. 40 already precompiled. Precompilation completed after 18.47s ################################################################################ # Loading # Loading Kwant... [ Info: Installing matplotlib via the Conda matplotlib package... [ Info: Running `conda install -q -y matplotlib` in root environment Channels: - conda-forge Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64 added / updated specs: - matplotlib The following packages will be downloaded: package | build ---------------------------|----------------- alsa-lib-1.2.14 | hb9d3cd8_0 553 KB conda-forge brotli-1.1.0 | hb9d3cd8_3 19 KB conda-forge brotli-bin-1.1.0 | hb9d3cd8_3 19 KB conda-forge cairo-1.18.4 | h3394656_0 955 KB conda-forge contourpy-1.3.3 | py312hd9148b4_2 289 KB conda-forge cycler-0.12.1 | pyhd8ed1ab_1 13 KB conda-forge cyrus-sasl-2.1.28 | hd9c7081_0 205 KB conda-forge dbus-1.16.2 | h3c4dab8_0 428 KB conda-forge double-conversion-3.3.1 | h5888daf_0 68 KB conda-forge font-ttf-dejavu-sans-mono-2.37| hab24e00_0 388 KB conda-forge font-ttf-inconsolata-3.000 | h77eed37_0 94 KB conda-forge font-ttf-source-code-pro-2.038| h77eed37_0 684 KB conda-forge font-ttf-ubuntu-0.83 | h77eed37_3 1.5 MB conda-forge fontconfig-2.15.0 | h7e30c49_1 259 KB conda-forge fonts-conda-ecosystem-1 | 0 4 KB conda-forge fonts-conda-forge-1 | 0 4 KB conda-forge fonttools-4.60.1 | py312h8a5da7c_0 2.8 MB conda-forge freetype-2.14.1 | ha770c72_0 169 KB conda-forge graphite2-1.3.14 | hecca717_2 97 KB conda-forge harfbuzz-11.4.5 | h15599e2_0 2.3 MB conda-forge kiwisolver-1.4.9 | py312h0a2e395_1 75 KB conda-forge lcms2-2.17 | h717163a_0 242 KB conda-forge lerc-4.0.0 | h0aef613_1 258 KB conda-forge libbrotlicommon-1.1.0 | hb9d3cd8_3 68 KB conda-forge libbrotlidec-1.1.0 | hb9d3cd8_3 32 KB conda-forge libbrotlienc-1.1.0 | hb9d3cd8_3 276 KB conda-forge libclang-cpp20.1-20.1.8 |default_h99862b1_4 20.3 MB conda-forge libclang13-21.1.0 |default_h746c552_1 11.8 MB conda-forge libcups-2.3.3 | hb8b1518_5 4.3 MB conda-forge libdeflate-1.24 | h86f0d12_0 71 KB conda-forge libdrm-2.4.125 | hb03c661_1 304 KB conda-forge libegl-1.7.0 | ha4b6fd6_2 44 KB conda-forge libfreetype-2.14.1 | ha770c72_0 7 KB conda-forge libfreetype6-2.14.1 | h73754d4_0 378 KB conda-forge libgl-1.7.0 | ha4b6fd6_2 132 KB conda-forge libglib-2.84.3 | hf39c6af_0 3.8 MB conda-forge libglvnd-1.7.0 | ha4b6fd6_2 129 KB conda-forge libglx-1.7.0 | ha4b6fd6_2 74 KB conda-forge libjpeg-turbo-3.1.0 | hb9d3cd8_0 614 KB conda-forge libllvm20-20.1.8 | hecd9e04_0 41.9 MB conda-forge libllvm21-21.1.0 | hecd9e04_0 42.3 MB conda-forge libntlm-1.8 | hb9d3cd8_0 33 KB conda-forge libopengl-1.7.0 | ha4b6fd6_2 50 KB conda-forge libpciaccess-0.18 | hb9d3cd8_0 28 KB conda-forge libpng-1.6.50 | h421ea60_1 310 KB conda-forge libpq-17.6 | h3675c94_2 2.6 MB conda-forge libtiff-4.7.1 | h8261f1e_0 427 KB conda-forge libwebp-base-1.6.0 | hd42ef1d_0 419 KB conda-forge libxcb-1.17.0 | h8a09558_0 387 KB conda-forge libxkbcommon-1.11.0 | he8b52b9_0 773 KB conda-forge libxslt-1.1.43 | h7a3aeb2_0 239 KB conda-forge matplotlib-3.10.7 | py312h7900ff3_0 17 KB conda-forge matplotlib-base-3.10.7 | py312he3d6523_0 8.1 MB conda-forge munkres-1.1.4 | pyhd8ed1ab_1 15 KB conda-forge openjpeg-2.5.4 | h55fea9a_0 347 KB conda-forge openldap-2.6.10 | he970967_0 762 KB conda-forge pcre2-10.45 | hc749103_0 1.1 MB conda-forge pillow-11.3.0 | py312h7b42cdd_3 1004 KB conda-forge pixman-0.46.4 | h54a6638_1 440 KB conda-forge pthread-stubs-0.4 | hb9d3cd8_1002 8 KB conda-forge pyparsing-3.2.5 | pyhcf101f3_0 102 KB conda-forge pyside6-6.9.1 | py312hdb827e4_0 9.7 MB conda-forge python-dateutil-2.9.0.post0| pyhe01879c_2 228 KB conda-forge qhull-2020.2 | h434a139_5 540 KB conda-forge qt6-main-6.9.1 | h6ac528c_2 50.6 MB conda-forge six-1.17.0 | pyhe01879c_1 18 KB conda-forge tornado-6.5.2 | py312h4c3975b_1 831 KB conda-forge unicodedata2-16.0.0 | py312h4c3975b_1 395 KB conda-forge wayland-1.24.0 | h3e06ad9_0 323 KB conda-forge xcb-util-0.4.1 | h4f16b4b_2 20 KB conda-forge xcb-util-cursor-0.1.5 | hb9d3cd8_0 20 KB conda-forge xcb-util-image-0.4.0 | hb711507_2 24 KB conda-forge xcb-util-keysyms-0.4.1 | hb711507_0 14 KB conda-forge xcb-util-renderutil-0.3.10 | hb711507_0 17 KB conda-forge xcb-util-wm-0.4.2 | hb711507_0 50 KB conda-forge xkeyboard-config-2.46 | hb03c661_0 388 KB conda-forge xorg-libice-1.1.2 | hb9d3cd8_0 57 KB conda-forge xorg-libsm-1.2.6 | he73a12e_0 27 KB conda-forge xorg-libx11-1.8.12 | h4f16b4b_0 816 KB conda-forge xorg-libxau-1.0.12 | hb9d3cd8_0 14 KB conda-forge xorg-libxcomposite-0.4.6 | hb9d3cd8_2 13 KB conda-forge xorg-libxcursor-1.2.3 | hb9d3cd8_0 32 KB conda-forge xorg-libxdamage-1.1.6 | hb9d3cd8_0 13 KB conda-forge xorg-libxdmcp-1.1.5 | hb9d3cd8_0 19 KB conda-forge xorg-libxext-1.3.6 | hb9d3cd8_0 49 KB conda-forge xorg-libxfixes-6.0.2 | hb03c661_0 20 KB conda-forge xorg-libxi-1.8.2 | hb9d3cd8_0 46 KB conda-forge xorg-libxrandr-1.5.4 | hb9d3cd8_0 29 KB conda-forge xorg-libxrender-0.9.12 | hb9d3cd8_0 32 KB conda-forge xorg-libxtst-1.2.5 | hb9d3cd8_3 32 KB conda-forge xorg-libxxf86vm-1.1.6 | hb9d3cd8_0 17 KB conda-forge ------------------------------------------------------------ Total: 219.2 MB The following NEW packages will be INSTALLED: alsa-lib conda-forge/linux-64::alsa-lib-1.2.14-hb9d3cd8_0 brotli conda-forge/linux-64::brotli-1.1.0-hb9d3cd8_3 brotli-bin conda-forge/linux-64::brotli-bin-1.1.0-hb9d3cd8_3 cairo conda-forge/linux-64::cairo-1.18.4-h3394656_0 contourpy conda-forge/linux-64::contourpy-1.3.3-py312hd9148b4_2 cycler conda-forge/noarch::cycler-0.12.1-pyhd8ed1ab_1 cyrus-sasl conda-forge/linux-64::cyrus-sasl-2.1.28-hd9c7081_0 dbus conda-forge/linux-64::dbus-1.16.2-h3c4dab8_0 double-conversion conda-forge/linux-64::double-conversion-3.3.1-h5888daf_0 font-ttf-dejavu-s~ conda-forge/noarch::font-ttf-dejavu-sans-mono-2.37-hab24e00_0 font-ttf-inconsol~ conda-forge/noarch::font-ttf-inconsolata-3.000-h77eed37_0 font-ttf-source-c~ conda-forge/noarch::font-ttf-source-code-pro-2.038-h77eed37_0 font-ttf-ubuntu conda-forge/noarch::font-ttf-ubuntu-0.83-h77eed37_3 fontconfig conda-forge/linux-64::fontconfig-2.15.0-h7e30c49_1 fonts-conda-ecosy~ conda-forge/noarch::fonts-conda-ecosystem-1-0 fonts-conda-forge conda-forge/noarch::fonts-conda-forge-1-0 fonttools conda-forge/linux-64::fonttools-4.60.1-py312h8a5da7c_0 freetype conda-forge/linux-64::freetype-2.14.1-ha770c72_0 graphite2 conda-forge/linux-64::graphite2-1.3.14-hecca717_2 harfbuzz conda-forge/linux-64::harfbuzz-11.4.5-h15599e2_0 kiwisolver conda-forge/linux-64::kiwisolver-1.4.9-py312h0a2e395_1 lcms2 conda-forge/linux-64::lcms2-2.17-h717163a_0 lerc conda-forge/linux-64::lerc-4.0.0-h0aef613_1 libbrotlicommon conda-forge/linux-64::libbrotlicommon-1.1.0-hb9d3cd8_3 libbrotlidec conda-forge/linux-64::libbrotlidec-1.1.0-hb9d3cd8_3 libbrotlienc conda-forge/linux-64::libbrotlienc-1.1.0-hb9d3cd8_3 libclang-cpp20.1 conda-forge/linux-64::libclang-cpp20.1-20.1.8-default_h99862b1_4 libclang13 conda-forge/linux-64::libclang13-21.1.0-default_h746c552_1 libcups conda-forge/linux-64::libcups-2.3.3-hb8b1518_5 libdeflate conda-forge/linux-64::libdeflate-1.24-h86f0d12_0 libdrm conda-forge/linux-64::libdrm-2.4.125-hb03c661_1 libegl conda-forge/linux-64::libegl-1.7.0-ha4b6fd6_2 libfreetype conda-forge/linux-64::libfreetype-2.14.1-ha770c72_0 libfreetype6 conda-forge/linux-64::libfreetype6-2.14.1-h73754d4_0 libgl conda-forge/linux-64::libgl-1.7.0-ha4b6fd6_2 libglib conda-forge/linux-64::libglib-2.84.3-hf39c6af_0 libglvnd conda-forge/linux-64::libglvnd-1.7.0-ha4b6fd6_2 libglx conda-forge/linux-64::libglx-1.7.0-ha4b6fd6_2 libjpeg-turbo conda-forge/linux-64::libjpeg-turbo-3.1.0-hb9d3cd8_0 libllvm20 conda-forge/linux-64::libllvm20-20.1.8-hecd9e04_0 libllvm21 conda-forge/linux-64::libllvm21-21.1.0-hecd9e04_0 libntlm conda-forge/linux-64::libntlm-1.8-hb9d3cd8_0 libopengl conda-forge/linux-64::libopengl-1.7.0-ha4b6fd6_2 libpciaccess conda-forge/linux-64::libpciaccess-0.18-hb9d3cd8_0 libpng conda-forge/linux-64::libpng-1.6.50-h421ea60_1 libpq conda-forge/linux-64::libpq-17.6-h3675c94_2 libtiff conda-forge/linux-64::libtiff-4.7.1-h8261f1e_0 libwebp-base conda-forge/linux-64::libwebp-base-1.6.0-hd42ef1d_0 libxcb conda-forge/linux-64::libxcb-1.17.0-h8a09558_0 libxkbcommon conda-forge/linux-64::libxkbcommon-1.11.0-he8b52b9_0 libxslt conda-forge/linux-64::libxslt-1.1.43-h7a3aeb2_0 matplotlib conda-forge/linux-64::matplotlib-3.10.7-py312h7900ff3_0 matplotlib-base conda-forge/linux-64::matplotlib-base-3.10.7-py312he3d6523_0 munkres conda-forge/noarch::munkres-1.1.4-pyhd8ed1ab_1 openjpeg conda-forge/linux-64::openjpeg-2.5.4-h55fea9a_0 openldap conda-forge/linux-64::openldap-2.6.10-he970967_0 pcre2 conda-forge/linux-64::pcre2-10.45-hc749103_0 pillow conda-forge/linux-64::pillow-11.3.0-py312h7b42cdd_3 pixman conda-forge/linux-64::pixman-0.46.4-h54a6638_1 pthread-stubs conda-forge/linux-64::pthread-stubs-0.4-hb9d3cd8_1002 pyparsing conda-forge/noarch::pyparsing-3.2.5-pyhcf101f3_0 pyside6 conda-forge/linux-64::pyside6-6.9.1-py312hdb827e4_0 python-dateutil conda-forge/noarch::python-dateutil-2.9.0.post0-pyhe01879c_2 qhull conda-forge/linux-64::qhull-2020.2-h434a139_5 qt6-main conda-forge/linux-64::qt6-main-6.9.1-h6ac528c_2 six conda-forge/noarch::six-1.17.0-pyhe01879c_1 tornado conda-forge/linux-64::tornado-6.5.2-py312h4c3975b_1 unicodedata2 conda-forge/linux-64::unicodedata2-16.0.0-py312h4c3975b_1 wayland conda-forge/linux-64::wayland-1.24.0-h3e06ad9_0 xcb-util conda-forge/linux-64::xcb-util-0.4.1-h4f16b4b_2 xcb-util-cursor conda-forge/linux-64::xcb-util-cursor-0.1.5-hb9d3cd8_0 xcb-util-image conda-forge/linux-64::xcb-util-image-0.4.0-hb711507_2 xcb-util-keysyms conda-forge/linux-64::xcb-util-keysyms-0.4.1-hb711507_0 xcb-util-renderut~ conda-forge/linux-64::xcb-util-renderutil-0.3.10-hb711507_0 xcb-util-wm conda-forge/linux-64::xcb-util-wm-0.4.2-hb711507_0 xkeyboard-config conda-forge/linux-64::xkeyboard-config-2.46-hb03c661_0 xorg-libice conda-forge/linux-64::xorg-libice-1.1.2-hb9d3cd8_0 xorg-libsm conda-forge/linux-64::xorg-libsm-1.2.6-he73a12e_0 xorg-libx11 conda-forge/linux-64::xorg-libx11-1.8.12-h4f16b4b_0 xorg-libxau conda-forge/linux-64::xorg-libxau-1.0.12-hb9d3cd8_0 xorg-libxcomposite conda-forge/linux-64::xorg-libxcomposite-0.4.6-hb9d3cd8_2 xorg-libxcursor conda-forge/linux-64::xorg-libxcursor-1.2.3-hb9d3cd8_0 xorg-libxdamage conda-forge/linux-64::xorg-libxdamage-1.1.6-hb9d3cd8_0 xorg-libxdmcp conda-forge/linux-64::xorg-libxdmcp-1.1.5-hb9d3cd8_0 xorg-libxext conda-forge/linux-64::xorg-libxext-1.3.6-hb9d3cd8_0 xorg-libxfixes conda-forge/linux-64::xorg-libxfixes-6.0.2-hb03c661_0 xorg-libxi conda-forge/linux-64::xorg-libxi-1.8.2-hb9d3cd8_0 xorg-libxrandr conda-forge/linux-64::xorg-libxrandr-1.5.4-hb9d3cd8_0 xorg-libxrender conda-forge/linux-64::xorg-libxrender-0.9.12-hb9d3cd8_0 xorg-libxtst conda-forge/linux-64::xorg-libxtst-1.2.5-hb9d3cd8_3 xorg-libxxf86vm conda-forge/linux-64::xorg-libxxf86vm-1.1.6-hb9d3cd8_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done ERROR: InitError: PyError (PyImport_ImportModule The Python package kwant could not be imported by pyimport. Usually this means that you did not install kwant in the Python version being used by PyCall. PyCall is currently configured to use the Julia-specific Python distribution installed by the Conda.jl package. To install the kwant module, you can use `pyimport_conda("kwant", PKG)`, where PKG is the Anaconda package that contains the module kwant, or alternatively you can use the Conda package directly (via `using Conda` followed by `Conda.add` etcetera). Alternatively, if you want to use a different Python distribution on your system, such as a system-wide Python (as opposed to the Julia-specific Python), you can re-configure PyCall with that Python. As explained in the PyCall documentation, set ENV["PYTHON"] to the path/name of the python executable you want to use, run Pkg.build("PyCall"), and re-launch Julia. ) ModuleNotFoundError("No module named 'kwant'") Stacktrace: [1] pyimport(name::String) @ PyCall ~/.julia/packages/PyCall/1gn3u/src/PyCall.jl:558 [2] __init__() @ Kwant.lattice ~/.julia/packages/Kwant/MID6m/src/load_kwant.jl:9 [3] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1418 [4] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1406 [5] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1294 [6] _include_from_serialized @ ./loading.jl:1251 [inlined] [7] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2126 [8] _require_search_from_serialized @ ./loading.jl:2020 [inlined] [9] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2670 [10] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2536 [11] macro expansion @ ./loading.jl:2464 [inlined] [12] macro expansion @ ./lock.jl:376 [inlined] [13] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2428 [14] require @ ./loading.jl:2404 [inlined] [15] eval_import_path @ ./module.jl:36 [inlined] [16] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [17] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [18] top-level scope @ none:1 [19] eval(m::Module, e::Any) @ Core ./boot.jl:489 [20] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [21] _start() @ Base ./client.jl:577 during initialization of module lattice Loading failed after 52.52s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using Kwant'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:611 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:526 [3] run(::Cmd) @ Base ./process.jl:523 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:309 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [7] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 192.48s: there were unidentified errors