Package evaluation to test HMMBase on Julia 1.13.0-DEV.1324 (c1d413cf8a*) started at 2025-10-17T18:42:38.380


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.93s


################################################################################
# Installation
#

Installing HMMBase...
   Resolving package versions...
    Updating `~/.julia/environments/v1.13/Project.toml`
  [b2b3ca75] + HMMBase v1.0.7
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [dce04be8] + ArgCheck v2.5.0
⌅ [aaaa29a8] + Clustering v0.14.4
  [34da2185] + Compat v4.18.1
  [9a962f9c] + DataAPI v1.16.0
⌅ [864edb3b] + DataStructures v0.18.22
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.122
  [ffbed154] + DocStringExtensions v0.9.5
  [1a297f60] + FillArrays v1.14.0
  [b2b3ca75] + HMMBase v1.0.7
⌅ [e91730f6] + Hungarian v0.6.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e1d29d7a] + Missings v1.2.0
  [b8a86587] + NearestNeighbors v0.4.22
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.35
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [189a3867] + Reexport v1.2.2
  [79098fc4] + Rmath v0.8.0
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.6.1
  [90137ffa] + StaticArrays v1.9.15
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.1
⌅ [2913bbd2] + StatsBase v0.33.21
  [4c63d2b9] + StatsFuns v1.5.0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [d6f4376e] + Markdown v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 5.57s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 49.27s


################################################################################
# Testing
#

     Testing HMMBase
      Status `/tmp/jl_AsYKGH/Project.toml`
  [dce04be8] ArgCheck v2.5.0
⌅ [aaaa29a8] Clustering v0.14.4
  [31c24e10] Distributions v0.25.122
  [b2b3ca75] HMMBase v1.0.7
⌅ [e91730f6] Hungarian v0.6.0
  [682c06a0] JSON v1.2.0
  [37e2e46d] LinearAlgebra v1.13.0
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_AsYKGH/Manifest.toml`
  [66dad0bd] AliasTables v1.1.3
  [dce04be8] ArgCheck v2.5.0
⌅ [aaaa29a8] Clustering v0.14.4
  [34da2185] Compat v4.18.1
  [9a962f9c] DataAPI v1.16.0
⌅ [864edb3b] DataStructures v0.18.22
  [b4f34e82] Distances v0.10.12
  [31c24e10] Distributions v0.25.122
  [ffbed154] DocStringExtensions v0.9.5
  [1a297f60] FillArrays v1.14.0
  [b2b3ca75] HMMBase v1.0.7
⌅ [e91730f6] Hungarian v0.6.0
  [34004b35] HypergeometricFunctions v0.3.28
  [92d709cd] IrrationalConstants v0.2.6
  [692b3bcd] JLLWrappers v1.7.1
  [682c06a0] JSON v1.2.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [e1d29d7a] Missings v1.2.0
  [b8a86587] NearestNeighbors v0.4.22
  [bac558e1] OrderedCollections v1.8.1
  [90014a1f] PDMats v0.11.35
  [69de0a69] Parsers v2.8.3
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.0
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [189a3867] Reexport v1.2.2
  [79098fc4] Rmath v0.8.0
  [a2af1166] SortingAlgorithms v1.2.2
  [276daf66] SpecialFunctions v2.6.1
  [90137ffa] StaticArrays v1.9.15
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.1
⌅ [2913bbd2] StatsBase v0.33.21
  [4c63d2b9] StatsFuns v1.5.0
  [ec057cc2] StructUtils v2.5.1
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.7+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [8e850b90] libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
┌ Warning: `MvNormal(μ::AbstractVector{<:Real}, σ::AbstractVector{<:Real})` is deprecated, use `MvNormal(μ, LinearAlgebra.Diagonal(map(abs2, σ)))` instead.
│   caller = ip:0x0
└ @ Core :-1
Test Summary: | Pass  Total   Time
Base          |    4      4  11.3s
Test Summary: | Pass  Total  Time
Base (2)      |    5      5  1.3s
Test Summary: | Pass  Total  Time
Base (3)      |    4      4  0.8s
Test Summary: | Pass  Total  Time
Base (4)      |   10     10  3.2s
Test Summary: | Pass  Total  Time
Base (5)      |    1      1  1.7s
Test Summary: | Pass  Total  Time
Constructors  |    6      6  1.8s
Test Summary:             | Pass  Total  Time
Stationnary Distributions |    6      6  9.2s
Test Summary: | Pass  Total  Time
Messages (1)  |    4      4  3.4s
Test Summary: | Pass  Broken  Total  Time
Messages (3)  |    4       2      6  1.9s
Test Summary: | Pass  Total  Time
Viterbi       |    1      1  0.0s
Test Summary: | Pass  Total  Time
MLE           |    4      4  5.8s
Test Summary: | Pass  Total  Time
Utilities (1) |    8      8  0.7s
Test Summary: | Pass  Total  Time
Utilities (2) |    2      2  7.8s
Test Summary:   | Pass  Total  Time
Reproducibility |    4      4  1.1s

Experimental: Error During Test at /home/pkgeval/.julia/packages/HMMBase/ZYC4P/test/unit.jl:294
  Got exception outside of a @test
  UndefVarError: `json` not defined in `Main`
  Suggestion: check for spelling errors or missing imports.
  Stacktrace:
    [1] top-level scope
      @ ~/.julia/packages/HMMBase/ZYC4P/test/unit.jl:296
    [2] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined]
    [3] macro expansion
      @ ~/.julia/packages/HMMBase/ZYC4P/test/unit.jl:297 [inlined]
    [4] include(mapexpr::Function, mod::Module, _path::String)
      @ Base ./Base.jl:310
    [5] top-level scope
      @ ~/.julia/packages/HMMBase/ZYC4P/test/runtests.jl:2
    [6] include(mapexpr::Function, mod::Module, _path::String)
      @ Base ./Base.jl:310
    [7] top-level scope
      @ none:6
    [8] eval(m::Module, e::Any)
      @ Core ./boot.jl:489
    [9] exec_options(opts::Base.JLOptions)
      @ Base ./client.jl:310
   [10] _start()
      @ Base ./client.jl:577
Test Summary: | Error  Total  Time
Experimental  |     1      1  2.3s
RNG of the outermost testset: Xoshiro(0xcb82d87b3279db46, 0x5b02822dab8f4a3f, 0x570b36e900712aba, 0x7b378b16d870c1e6, 0xee473f312272dcef)
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/HMMBase/ZYC4P/test/unit.jl:294
in expression starting at /home/pkgeval/.julia/packages/HMMBase/ZYC4P/test/runtests.jl:2

Testing failed after 73.36s

ERROR: LoadError: Package HMMBase errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2674
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2523 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:548
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:525
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 154.65s: package tests unexpectedly errored