Package evaluation to load ExactWrightFisher on Julia 1.13.0-DEV.1324 (c1d413cf8a*) started at 2025-10-17T18:55:46.501


################################################################################
# Set-up
#


Set-up completed after 0.13s


################################################################################
# Installation
#

Installing ExactWrightFisher...
   Resolving package versions...
    Updating `~/.julia/environments/v1.13/Project.toml`
  [8c1589a6] + ExactWrightFisher v0.1.11
    Updating `~/.julia/environments/v1.13/Manifest.toml`
⌅ [c3fe647b] + AbstractAlgebra v0.35.3
  [66dad0bd] + AliasTables v1.1.3
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.19.1
  [31c24e10] + Distributions v0.25.122
  [ffbed154] + DocStringExtensions v0.9.5
  [8c1589a6] + ExactWrightFisher v0.1.11
  [1a297f60] + FillArrays v1.14.0
⌅ [d5909c97] + GroupsCore v0.4.2
  [34004b35] + HypergeometricFunctions v0.3.28
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [1914dd2f] + MacroTools v0.5.16
  [e1d29d7a] + Missings v1.2.0
⌅ [2edaba10] + Nemo v0.39.1
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.35
  [21216c6a] + Preferences v1.5.0
  [92933f4c] + ProgressMeter v1.11.0
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [fb686558] + RandomExtensions v0.4.4
  [189a3867] + Reexport v1.2.2
  [79098fc4] + Rmath v0.8.0
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.6.1
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.1
  [2913bbd2] + StatsBase v0.34.6
  [4c63d2b9] + StatsFuns v1.5.0
  [e21ec000] + Antic_jll v0.201.500+0
  [d9960996] + Arb_jll v200.2300.0+0
  [fcfa6d1b] + Calcium_jll v0.401.100+0
⌅ [e134572f] + FLINT_jll v200.900.9+0
  [656ef2d0] + OpenBLAS32_jll v0.3.29+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.13.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [781609d7] + GMP_jll v6.3.0+2
  [deac9b47] + LibCURL_jll v8.16.0+0
  [e37daf67] + LibGit2_jll v1.9.1+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [3a97d323] + MPFR_jll v4.2.2+0
  [14a3606d] + MozillaCACerts_jll v2025.9.9
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efcefdf7] + PCRE2_jll v10.46.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.67.1+0
  [3f19e933] + p7zip_jll v17.6.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 8.4s


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# Precompilation
#

Precompiling PkgEval dependencies...
     Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
    Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
  21885.3 ms  ✓ AbstractAlgebra
  33963.1 ms  ✓ Nemo

  2 dependencies had output during precompilation:
┌ Nemo
│  WARNING: Constructor for type "Float64" was extended in `Nemo` without explicit qualification or import.
│    NOTE: Assumed "Float64" refers to `Base.Float64`. This behavior is deprecated and may differ in future versions.
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function Float64 end`.
│    Hint: To silence the warning, qualify `Float64` as `Base.Float64` in the method signature or explicitly `import Base: Float64`.
│  WARNING: Constructor for type "BigFloat" was extended in `Nemo` without explicit qualification or import.
│    NOTE: Assumed "BigFloat" refers to `Base.BigFloat`. This behavior is deprecated and may differ in future versions.
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function BigFloat end`.
│    Hint: To silence the warning, qualify `BigFloat` as `Base.BigFloat` in the method signature or explicitly `import Base: BigFloat`.
│  WARNING: Constructor for type "BigInt" was extended in `Nemo` without explicit qualification or import.
│    NOTE: Assumed "BigInt" refers to `Base.BigInt`. This behavior is deprecated and may differ in future versions.
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function BigInt end`.
│    Hint: To silence the warning, qualify `BigInt` as `Base.BigInt` in the method signature or explicitly `import Base: BigInt`.
│  WARNING: Constructor for type "Integer" was extended in `Nemo` without explicit qualification or import.
│    NOTE: Assumed "Integer" refers to `Base.Integer`. This behavior is deprecated and may differ in future versions.
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function Integer end`.
│    Hint: To silence the warning, qualify `Integer` as `Base.Integer` in the method signature or explicitly `import Base: Integer`.
└  
┌ AbstractAlgebra
│  WARNING: Constructor for type "Matrix" was extended in `AbstractAlgebra` without explicit qualification or import.
│    NOTE: Assumed "Matrix" refers to `Base.Matrix`. This behavior is deprecated and may differ in future versions.
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function Matrix end`.
│    Hint: To silence the warning, qualify `Matrix` as `Base.Matrix` in the method signature or explicitly `import Base: Matrix`.
└  

Precompilation completed after 75.94s


################################################################################
# Loading
#

Loading ExactWrightFisher...
ERROR: LoadError: InitError: MethodError: no method matching process_backtrace(::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}})
The function `process_backtrace` exists, but no method is defined for this combination of argument types.

Closest candidates are:
  process_backtrace(!Matched::Vector{Any})
   @ Base errorshow.jl:1097
  process_backtrace(!Matched::Vector{Base.StackTraces.StackFrame})
   @ Base errorshow.jl:1092

Stacktrace:
  [1] __init__()
    @ Nemo ~/.julia/packages/Nemo/VHAIi/src/Nemo.jl:373
  [2] run_module_init(mod::Module, i::Int64)
    @ Base ./loading.jl:1418
  [3] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)
    @ Base ./loading.jl:1406
  [4] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)
    @ Base ./loading.jl:1294
  [5] _include_from_serialized
    @ ./loading.jl:1251 [inlined]
  [6] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})
    @ Base ./loading.jl:2126
  [7] _require_search_from_serialized
    @ ./loading.jl:2020 [inlined]
  [8] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2670
  [9] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2536
 [10] macro expansion
    @ ./loading.jl:2464 [inlined]
 [11] macro expansion
    @ ./lock.jl:376 [inlined]
 [12] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2428
 [13] require
    @ ./loading.jl:2404 [inlined]
 [14] eval_import_path
    @ ./module.jl:36 [inlined]
 [15] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [16] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [17] top-level scope
    @ ~/.julia/packages/ExactWrightFisher/gYX8w/src/arb_definitions.jl:1
 [18] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [19] top-level scope
    @ ~/.julia/packages/ExactWrightFisher/gYX8w/src/ExactWrightFisher.jl:5
 [20] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [21] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2777
 [22] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2536
 [23] macro expansion
    @ ./loading.jl:2464 [inlined]
 [24] macro expansion
    @ ./lock.jl:376 [inlined]
 [25] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2428
 [26] require
    @ ./loading.jl:2404 [inlined]
 [27] eval_import_path
    @ ./module.jl:36 [inlined]
 [28] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [29] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [30] top-level scope
    @ none:1
 [31] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [32] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:310
 [33] _start()
    @ Base ./client.jl:577
during initialization of module Nemo
in expression starting at /home/pkgeval/.julia/packages/ExactWrightFisher/gYX8w/src/arb_definitions.jl:1
in expression starting at /home/pkgeval/.julia/packages/ExactWrightFisher/gYX8w/src/ExactWrightFisher.jl:1

Loading failed after 25.63s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using ExactWrightFisher'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:611 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:526
 [3] run(::Cmd)
   @ Base ./process.jl:523
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:193
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [7] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:184

PkgEval failed after 163.28s: there were unidentified errors