Package evaluation to test DIVAnd on Julia 1.13.0-DEV.1324 (c1d413cf8a*) started at 2025-10-17T22:17:54.380 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.93s ################################################################################ # Installation # Installing DIVAnd... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [efc8151c] + DIVAnd v2.7.13 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [2169fc97] + AlgebraicMultigrid v1.1.0 [4fba245c] + ArrayInterface v7.21.0 [4c555306] + ArrayLayouts v1.12.0 [13072b0f] + AxisAlgorithms v1.1.0 [d1d4a3ce] + BitFlags v0.1.9 [179af706] + CFTime v0.2.4 [d360d2e6] + ChainRulesCore v1.26.0 [944b1d66] + CodecZlib v0.7.8 [1fbeeb36] + CommonDataModel v0.4.1 [38540f10] + CommonSolve v0.2.4 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [efc8151c] + DIVAnd v2.7.13 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [3c3547ce] + DiskArrays v0.4.17 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 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To see why use `status --outdated -m` Installation completed after 11.68s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 93.96s ################################################################################ # Testing # Testing DIVAnd Status `/tmp/jl_MpTmJM/Project.toml` [2169fc97] AlgebraicMultigrid v1.1.0 [efc8151c] DIVAnd v2.7.13 ⌅ [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 [8f5d6c58] EzXML v1.2.3 [cd3eb016] HTTP v1.10.19 [a98d9a8b] Interpolations v0.16.2 [42fd0dbc] IterativeSolvers v0.9.4 [e1d29d7a] Missings v1.2.0 [ffc61752] Mustache v1.0.21 [85f8d34a] NCDatasets v0.14.9 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.3 [10745b16] Statistics v1.11.1 [a5390f91] ZipFile v0.10.1 [7243133f] NetCDF_jll v401.900.300+0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [37e2e46d] LinearAlgebra v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [1a1011a3] SharedArrays v1.11.0 [2f01184e] SparseArrays v1.13.0 [4607b0f0] SuiteSparse [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 Status `/tmp/jl_MpTmJM/Manifest.toml` [47edcb42] ADTypes v1.18.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [2169fc97] AlgebraicMultigrid v1.1.0 [4fba245c] ArrayInterface v7.21.0 [4c555306] ArrayLayouts v1.12.0 [13072b0f] AxisAlgorithms v1.1.0 [d1d4a3ce] BitFlags v0.1.9 [179af706] CFTime v0.2.4 [d360d2e6] ChainRulesCore v1.26.0 [944b1d66] CodecZlib v0.7.8 [1fbeeb36] CommonDataModel v0.4.1 [38540f10] CommonSolve v0.2.4 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [efc8151c] DIVAnd v2.7.13 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [3c3547ce] DiskArrays v0.4.17 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [8f5d6c58] EzXML v1.2.3 [1a297f60] FillArrays 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constraints restrict them from upgrading. Testing Running tests... ┌ Warning: Expecting len array with zero in last direction; will be enforced └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_multivarEOF.jl:89 eps2jac = (1.0, 1.0) ┌ Warning: Expecting len array with zero in last direction; will be enforced └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_multivarJAC.jl:59 "error method in multivar $(meth)" = "error method in multivar cpme" methm = :cpme eps2jac = (1.0, 1.0) "error method in multivar $(meth)" = "error method in multivar cpme" methm = :cpme ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:205 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:205 ┌ Warning: too fine resolution for aexerr, using exact └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:303 ┌ Warning: too fine resolution for aexerr, using exact └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:303 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:205 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:210 ┌ Warning: You need to do that scaling by yourself, running diva again with a very high R matrix and divide by this second map └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:216 ┌ Warning: too fine resolution for aexerr, using exact └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:303 ┌ Warning: too fine resolution for aexerr, using exact └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:303 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:205 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:205 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:205 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:210 ┌ Warning: You need to do that scaling by yourself, running diva again with a very high R matrix and divide by this second map └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:216 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:210 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:210 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:205 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:210 ┌ Warning: You need to do that scaling by yourself, running diva again with a very high R matrix and divide by this second map └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:216 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:205 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:205 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:210 ┌ Warning: You need to do that scaling by yourself, running diva again with a very high R matrix and divide by this second map └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:216 ┌ Warning: too fine resolution for aexerr, using exact └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:303 ┌ Warning: too fine resolution for aexerr, using exact └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:303 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:210 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:210 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:205 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:210 ┌ Warning: You need to do that scaling by yourself, running diva again with a very high R matrix and divide by this second map └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:216 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:210 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:210 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:205 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:210 ┌ Warning: You need to do that scaling by yourself, running diva again with a very high R matrix and divide by this second map └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:216 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:210 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:210 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:205 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:210 ┌ Warning: You need to do that scaling by yourself, running diva again with a very high R matrix and divide by this second map └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:216 ┌ Warning: too fine resolution for aexerr, using exact └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:303 ┌ Warning: too fine resolution for aexerr, using exact └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:303 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:210 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:210 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:205 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:210 ┌ Warning: You need to do that scaling by yourself, running diva again with a very high R matrix and divide by this second map └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:216 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:210 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:210 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:205 ┌ Warning: Sorry, that method does not allow rescaling by spatial dependance of B └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:210 ┌ Warning: You need to do that scaling by yourself, running diva again with a very high R matrix and divide by this second map └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_errormap.jl:216 errmean = 7.527185124067081 (sum(Hxo .< yo), norm(Hxo - yo) ^ 2 / (size(yo))[1]) = (568, 0.3978801682968225) (violated, ntries) = (568, 1) (sum(Hxo .< yo), norm(Hxo - yo) ^ 2 / (size(yo))[1]) = (264, 0.32772925650104157) (violated, ntries) = (264, 2) (sum(Hxo .< yo), norm(Hxo - yo) ^ 2 / (size(yo))[1]) = (171, 0.33799110975201) (violated, ntries) = (171, 3) (sum(Hxo .< yo), norm(Hxo - yo) ^ 2 / (size(yo))[1]) = (337, 0.32280766740401623) (violated, ntries) = (337, 4) (sum(Hxo .< yo), norm(Hxo - yo) ^ 2 / (size(yo))[1]) = (258, 0.32385508059521156) (violated, ntries) = (258, 5) (sum(Hxo .< yo), norm(Hxo - yo) ^ 2 / (size(yo))[1]) = (209, 0.3224773066224094) (violated, ntries) = (209, 6) (sum(Hxo .< yo), norm(Hxo - yo) ^ 2 / (size(yo))[1]) = (194, 0.3219397148155767) (violated, ntries) = (194, 7) (sum(Hxo .< yo), norm(Hxo - yo) ^ 2 / (size(yo))[1]) = (113, 0.3217499638095539) (violated, ntries) = (113, 8) (sum(Hxo .< yo), norm(Hxo - yo) ^ 2 / (size(yo))[1]) = (82, 0.3215470915009901) (violated, ntries) = (82, 9) (sum(Hxo .< yo), norm(Hxo - yo) ^ 2 / (size(yo))[1]) = (55, 0.32139376127689573) (violated, ntries) = (55, 10) WARNING: Method definition fun(Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/DIVAnd/ciY3B/test/test_3dvar.jl:6 overwritten at /home/pkgeval/.julia/packages/DIVAnd/ciY3B/test/test_3dvar_large_stacked.jl:9. [ Info: number of windows: 1 [ Info: number of windows: 1 [ Info: download observations /home/pkgeval/.julia/packages/DIVAnd/ciY3B/test/../../DIVAnd-example-data/Provencal/WOD-Salinity.nc [ Info: Time step 1 / 4 [ Info: Time step 2 / 4 [ Info: Time step 3 / 4 [ Info: Time step 4 / 4 [ Info: Reading data from file /home/pkgeval/.julia/packages/DIVAnd/ciY3B/test/../data/time_series_small.txt [ Info: No. of profiles in the file: 2 [ Info: Working on variable Water body dissolved oxygen concentration [ Info: Starting loop on the 2 profiles [ Info: Done reading the profiles [ Info: download bathymetry /home/pkgeval/.julia/packages/DIVAnd/ciY3B/test/../../DIVAnd-example-data/Global/Bathymetry/gebco_30sec_16.nc [ Info: download bathymetry /home/pkgeval/.julia/packages/DIVAnd/ciY3B/test/../../DIVAnd-example-data/Global/Bathymetry/gebco_30sec_8.nc [ Info: Computing weights using 1 CPU thread(s) [ Info: download currents /home/pkgeval/.julia/packages/DIVAnd/ciY3B/test/../../DIVAnd-example-data/Adriatic/all-monthly-currents-2018.nc [ Info: average vozocrtx [ Info: time instance 1 of 4 [ Info: time instance 2 of 4 [ Info: time instance 3 of 4 [ Info: time instance 4 of 4 [ Info: average vomecrty [ Info: time instance 1 of 4 [ Info: time instance 2 of 4 [ Info: time instance 3 of 4 [ Info: time instance 4 of 4 [ Info: analysis uses the velocity time index 1 [ Info: download bathymetry /home/pkgeval/.julia/packages/DIVAnd/ciY3B/test/../../DIVAnd-example-data/Global/Bathymetry/gebco_30sec_16.nc [ Info: download observations /home/pkgeval/.julia/packages/DIVAnd/ciY3B/test/../../DIVAnd-example-data/Provencal/WOD-Salinity.nc [ Info: Creating new variable Salinity_deepest [ Info: Working on 6 depth layers [ Info: size = (18, 5, 6) [ Info: Creating new variable Salinity_deepest_depth [ Info: Depth index: 1 [ Info: Found 56 non missing values for depth 0.0 [ Info: Depth index: 2 [ Info: Found 55 non missing values for depth 20.0 [ Info: Depth index: 3 [ Info: Found 54 non missing values for depth 30.0 [ Info: Depth index: 4 [ Info: Found 36 non missing values for depth 500.0 [ Info: Depth index: 5 [ Info: Found 30 non missing values for depth 1000.0 [ Info: Depth index: 6 [ Info: Found 23 non missing values for depth 2000.0 [ Info: Written new variable deepest depth [ Info: keeping: 52 [ Info: Slicing lon[(5:17,)] [ Info: Slicing lat[(1:4,)] [ Info: Slicing depth[(Colon(),)] [ Info: Slicing time[(Colon(),)] [ Info: Slicing climatology_bounds[(Colon(), Colon())] [ Info: Slicing Salinity[(5:17, 1:4, Colon(), Colon())] [ Info: Slicing Salinity_L1[(5:17, 1:4, Colon(), Colon())] [ Info: Slicing Salinity_L2[(5:17, 1:4, Colon(), Colon())] [ Info: Slicing Salinity_L3[(5:17, 1:4, Colon(), Colon())] [ Info: Slicing Salinity_relerr[(5:17, 1:4, Colon(), Colon())] [ Info: Slicing obslon[(Colon(),)] [ Info: Slicing obslat[(Colon(),)] [ Info: Slicing obstime[(Colon(),)] [ Info: Slicing obsdepth[(Colon(),)] [ Info: Slicing obsid[(Colon(), Colon())] [ Info: Slicing Salinity_deepest[(5:17, 1:4, Colon())] [ Info: Slicing Salinity_deepest_L1[(5:17, 1:4, Colon())] [ Info: Slicing Salinity_deepest_L2[(5:17, 1:4, Colon())] [ Info: Slicing Salinity_deepest_L3[(5:17, 1:4, Colon())] [ Info: Slicing Salinity_deepest_depth[(5:17, 1:4)] [ Info: download bathymetry /home/pkgeval/.julia/packages/DIVAnd/ciY3B/test/../../DIVAnd-example-data/Global/Bathymetry/gebco_30sec_16.nc [ Info: download observations /home/pkgeval/.julia/packages/DIVAnd/ciY3B/test/../../DIVAnd-example-data/Provencal/WOD-Salinity.nc [ Info: download bathymetry /home/pkgeval/.julia/packages/DIVAnd/ciY3B/test/../../DIVAnd-example-data/Global/Bathymetry/gebco_30sec_16.nc ┌ Warning: Unoptimized versions do not allow for cross validation └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_heatmap.jl:98 ┌ Warning: Method GridKernel does not allow for cross validation. If you need the latter, force myheatmapmethod to DataKernel └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_heatmap.jl:93 ┌ Warning: Method GridKernel does not allow for cross validation. If you need the latter, force myheatmapmethod to DataKernel └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_heatmap.jl:93 ┌ Warning: Data array size (150,) is larger then maximum 100. Superobservations will be created. To avoid, increase nmax to the desired number of superobs └ @ DIVAnd ~/.julia/packages/DIVAnd/ciY3B/src/DIVAnd_heatmap.jl:46 Test Summary: | Pass Total Time DIVAnd | 472 472 26m02.1s Test Summary: | Pass Total Time DIVAnd-laplacian | 9 9 39.9s Test Summary: | Pass Total Time DIVAnd-jog | 10 10 53.8s Test Summary: | Pass Total Time DIVAnd-kernel | 5 5 36.3s Testing DIVAnd tests passed Testing completed after 1670.91s PkgEval succeeded after 1863.46s