Package evaluation to load CrystalInfoFramework on Julia 1.13.0-DEV.1324 (c1d413cf8a*) started at 2025-10-17T18:05:16.305 ################################################################################ # Set-up # Set-up completed after 0.17s ################################################################################ # Installation # Installing CrystalInfoFramework... Resolving package versions... Installed InlineStrings ─────────────── v1.4.5 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Compat ────────────────────── v4.18.1 Installed OrderedCollections ────────── v1.8.1 Installed Combinatorics ─────────────── v1.0.3 Installed URIs ──────────────────────── v1.6.1 Installed MacroTools ────────────────── v0.5.16 Installed DataStructures ────────────── v0.18.22 Installed DataValueInterfaces ───────── v1.0.0 Installed DataAPI ───────────────────── v1.16.0 Installed InvertedIndices ───────────── v1.3.1 Installed SentinelArrays ────────────── v1.4.8 Installed StringManipulation ────────── v0.4.1 Installed Statistics ────────────────── v1.11.1 Installed Tables ────────────────────── v1.12.1 Installed PrecompileTools ───────────── v1.3.3 Installed Reexport ──────────────────── v1.2.2 Installed Missings ──────────────────── v1.2.0 Installed PrettyTables ──────────────── v3.1.0 Installed Preferences ───────────────── v1.5.0 Installed PooledArrays ──────────────── v1.4.3 Installed CrystalInfoFramework ──────── v2.0.0 Installed TableTraits ───────────────── v1.0.1 Installed DataFrames ────────────────── v1.8.0 Installed LaTeXStrings ──────────────── v1.4.0 Installed Crayons ───────────────────── v4.1.1 Installed SortingAlgorithms ─────────── v1.2.2 Installed Lerche ────────────────────── v0.5.7 Updating `~/.julia/environments/v1.13/Project.toml` [6007d9b0] + CrystalInfoFramework v2.0.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [861a8166] + Combinatorics v1.0.3 [34da2185] + Compat v4.18.1 [a8cc5b0e] + Crayons v4.1.1 [6007d9b0] + CrystalInfoFramework v2.0.0 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [b964fa9f] + LaTeXStrings v1.4.0 [d42ef402] + Lerche v0.5.7 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [189a3867] + Reexport v1.2.2 [91c51154] + SentinelArrays v1.4.8 [a2af1166] + SortingAlgorithms v1.2.2 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [5c2747f8] + URIs v1.6.1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 9.15s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 4392.1 ms ✓ MacroTools 727.2 ms ✓ DataValueInterfaces 1886.0 ms ✓ URIs 1757.4 ms ✓ InlineStrings 856.5 ms ✓ Reexport 1373.9 ms ✓ OrderedCollections 755.6 ms ✓ DataAPI 980.5 ms ✓ Statistics 748.2 ms ✓ InvertedIndices 670.8 ms ✓ IteratorInterfaceExtensions 730.4 ms ✓ LaTeXStrings 1469.7 ms ✓ Combinatorics 1368.0 ms ✓ Crayons 1705.7 ms ✓ SentinelArrays 812.1 ms ✓ Preferences 812.2 ms ✓ Compat 698.3 ms ✓ Missings 748.3 ms ✓ PooledArrays 550.7 ms ✓ TableTraits 661.6 ms ✓ PrecompileTools 755.8 ms ✓ Compat → CompatLinearAlgebraExt 1250.1 ms ✓ Tables 2172.7 ms ✓ StringManipulation 2711.1 ms ✓ DataStructures 30995.6 ms ✓ PrettyTables 1476.2 ms ✓ SortingAlgorithms 17732.0 ms ✓ Lerche 72476.0 ms ✓ DataFrames 1 dependency had output during precompilation: ┌ Lerche │ WARNING: Constructor for type "String" was extended in `Lerche` without explicit qualification or import. │ NOTE: Assumed "String" refers to `Base.String`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function String end`. │ Hint: To silence the warning, qualify `String` as `Base.String` in the method signature or explicitly `import Base: String`. └ Precompilation completed after 185.21s ################################################################################ # Loading # Loading CrystalInfoFramework... ERROR: LoadError: MethodError: no method matching Lerche.PatternRE(::String, ::SubString{String}) The type `Lerche.PatternRE` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: Lerche.PatternRE(::Any, ::Any, !Matched::Any) @ Lerche ~/.julia/packages/Lerche/xNSsO/src/lexer.jl:46 Lerche.PatternRE(::String, !Matched::Set{Char}, !Matched::Any) @ Lerche ~/.julia/packages/Lerche/xNSsO/src/lexer.jl:46 Lerche.PatternRE(::Any; flags) @ Lerche ~/.julia/packages/Lerche/xNSsO/src/lexer.jl:51 ... Stacktrace: [1] _literal_to_pattern(literal::Lerche.Token) @ Lerche ~/.julia/packages/Lerche/xNSsO/src/load_grammar.jl:492 [2] transformer_func(pl::Lerche.PrepareLiterals, ::Val{:literal}, literal::Lerche.Token) @ Lerche ~/.julia/packages/Lerche/xNSsO/src/load_grammar.jl:500 [3] transformer_func(x::Lerche.PrepareLiterals, y::Val{:literal}, meta::Lerche.Meta, z::Vector{Any}) @ Lerche ~/.julia/packages/Lerche/xNSsO/src/utils.jl:234 [4] _call_userfunc(t::Lerche.PrepareLiterals, tr::Lerche.Tree; new_children::Nothing) @ Lerche ~/.julia/packages/Lerche/xNSsO/src/visitors.jl:124 [5] _call_userfunc @ ~/.julia/packages/Lerche/xNSsO/src/visitors.jl:118 [inlined] [6] _transform_tree @ ~/.julia/packages/Lerche/xNSsO/src/visitors.jl:201 [inlined] [7] (::Lerche.var"#_transform_children##0#_transform_children##1"{Lerche.PrepareLiterals})(c::Lerche.Tree) @ Lerche ~/.julia/packages/Lerche/xNSsO/src/visitors.jl:138 [8] iterate @ ./generator.jl:48 [inlined] [9] _collect(c::Vector{Any}, itr::Base.Generator{Vector{Any}, Lerche.var"#_transform_children##0#_transform_children##1"{Lerche.PrepareLiterals}}, ::Base.EltypeUnknown, isz::Base.HasShape{1}) @ Base ./array.jl:848 [10] collect_similar @ ./array.jl:763 [inlined] [11] map @ ./abstractarray.jl:3390 [inlined] [12] _transform_children(t::Lerche.PrepareLiterals, children::Vector{Any}) @ Lerche ~/.julia/packages/Lerche/xNSsO/src/visitors.jl:135 [13] transform(tip::Lerche.PrepareLiterals, tree::Lerche.Tree) @ Lerche ~/.julia/packages/Lerche/xNSsO/src/visitors.jl:212 [14] transform(tc::Lerche.TransformerChain, tree::Lerche.Tree) @ Lerche ~/.julia/packages/Lerche/xNSsO/src/visitors.jl:195 [15] (::Lerche.var"#compile##2#compile##3")(::Tuple{String, Tuple{Lerche.Tree, Int64}}) @ Lerche ./none:-1 [16] iterate @ ./generator.jl:48 [inlined] [17] grow_to! @ ./array.jl:901 [inlined] [18] collect(itr::Base.Generator{Base.Iterators.Filter{Lerche.var"#compile##4#compile##5", Vector{Tuple{String, Tuple{Lerche.Tree, Int64}}}}, Lerche.var"#compile##2#compile##3"}) @ Base ./array.jl:825 [19] compile(g::Lerche.Grammar, start::Vector{String}, terminals_to_keep::Set{Any}) @ Lerche ~/.julia/packages/Lerche/xNSsO/src/load_grammar.jl:613 [20] Lerche.Lark(grammar::String, loptions::Dict{String, Any}, source::String, cache_file::String) @ Lerche ~/.julia/packages/Lerche/xNSsO/src/lark.jl:190 [21] Lerche.Lark(grammar::String; options::@Kwargs{start::String, parser::String, lexer::String}) @ Lerche ~/.julia/packages/Lerche/xNSsO/src/lark.jl:123 [22] kwcall(::@NamedTuple{start::String, parser::String, lexer::String}, ::Type{Lerche.Lark}, grammar::String) @ Lerche ~/.julia/packages/Lerche/xNSsO/src/lark.jl:120 [23] top-level scope @ ~/.julia/packages/CrystalInfoFramework/fwJT7/src/cif2_transformer.jl:18 [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [25] top-level scope @ ~/.julia/packages/CrystalInfoFramework/fwJT7/src/CrystalInfoFramework.jl:50 [26] include(mod::Module, _path::String) @ Base ./Base.jl:309 [27] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2777 [28] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2536 [29] macro expansion @ ./loading.jl:2464 [inlined] [30] macro expansion @ ./lock.jl:376 [inlined] [31] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2428 [32] require @ ./loading.jl:2404 [inlined] [33] eval_import_path @ ./module.jl:36 [inlined] [34] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [35] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [36] top-level scope @ none:1 [37] eval(m::Module, e::Any) @ Core ./boot.jl:489 [38] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [39] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/CrystalInfoFramework/fwJT7/src/cif2_transformer.jl:18 in expression starting at /home/pkgeval/.julia/packages/CrystalInfoFramework/fwJT7/src/CrystalInfoFramework.jl:21 Loading failed after 64.91s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using CrystalInfoFramework'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:611 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:526 [3] run(::Cmd) @ Base ./process.jl:523 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:309 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [7] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 285.86s: there were unidentified errors