Package evaluation to load CAOS on Julia 1.13.0-DEV.1324 (c1d413cf8a*) started at 2025-10-17T18:02:12.079


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# Set-up
#


Set-up completed after 0.11s


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# Installation
#

Installing CAOS...
   Resolving package versions...
    Updating `~/.julia/environments/v1.13/Project.toml`
  [84b91ece] + CAOS v0.1.2
    Updating `~/.julia/environments/v1.13/Manifest.toml`
⌅ [67c07d97] + Automa v0.7.0
  [28d598bf] + BGZFStreams v0.3.2
⌅ [00701ae9] + BioAlignments v1.0.1
  [37cfa864] + BioCore v2.0.5
⌅ [7e6ae17a] + BioSequences v1.1.0
⌅ [3c28c6f8] + BioSymbols v3.1.0
  [fa51a905] + BioTools v1.2.0
  [e1450e63] + BufferedStreams v1.2.2
  [84b91ece] + CAOS v0.1.2
  [944b1d66] + CodecZlib v0.7.8
⌅ [3da002f7] + ColorTypes v0.9.1
⌅ [861a8166] + Combinatorics v0.7.0
⌅ [864edb3b] + DataStructures v0.17.20
  [8f5d6c58] + EzXML v1.2.3
  [a0c94c4b] + FastaIO v1.1.0
⌅ [53c48c17] + FixedPointNumbers v0.7.1
  [92fee26a] + GZip v0.6.2
⌅ [899a7d2d] + GenomicFeatures v1.0.4
  [1cb3b9ac] + IndexableBitVectors v1.0.0
  [524e6230] + IntervalTrees v1.1.0
  [692b3bcd] + JLLWrappers v1.7.1
⌅ [682c06a0] + JSON v0.21.4
  [2ec943e9] + Libz v1.0.1
  [bac558e1] + OrderedCollections v1.8.1
  [69de0a69] + Parsers v2.8.3
⌅ [f27b6e38] + Polynomials v0.6.1
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
⌅ [3cdcf5f2] + RecipesBase v0.8.0
  [69024149] + StringEncodings v0.3.7
  [0796e94c] + Tokenize v0.5.29
⌅ [3bb67fe8] + TranscodingStreams v0.9.13
  [7200193e] + Twiddle v1.1.2
  [30578b45] + URIParser v0.4.1
  [ddb6d928] + YAML v0.4.14
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [02c8fc9c] + XML2_jll v2.15.0+0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 7.17s


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# Precompilation
#

Precompiling PkgEval dependencies...
     Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
    Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
  10186.3 ms  ✓ ColorTypes
   2343.3 ms  ✓ Automa
  12659.7 ms  ✓ BioSymbols
   1679.5 ms  ✓ BioCore
  16443.5 ms  ✓ BioSequences
  15914.5 ms  ✓ GenomicFeatures
  16775.6 ms  ✓ BioAlignments
   3144.4 ms  ✓ BioTools
   4234.3 ms  ✓ CAOS
  9 dependencies successfully precompiled in 84 seconds. 43 already precompiled.
  3 dependencies had output during precompilation:
┌ BioSymbols
│  WARNING: Constructor for type "Char" was extended in `BioSymbols` without explicit qualification or import.
│    NOTE: Assumed "Char" refers to `Base.Char`. This behavior is deprecated and may differ in future versions.
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function Char end`.
│    Hint: To silence the warning, qualify `Char` as `Base.Char` in the method signature or explicitly `import Base: Char`.
└  
┌ BioSequences
│  WARNING: Constructor for type "UInt64" was extended in `BioSequences` without explicit qualification or import.
│    NOTE: Assumed "UInt64" refers to `Base.UInt64`. This behavior is deprecated and may differ in future versions.
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function UInt64 end`.
│    Hint: To silence the warning, qualify `UInt64` as `Base.UInt64` in the method signature or explicitly `import Base: UInt64`.
│  WARNING: method definition for BroadcastStyle at /home/pkgeval/.julia/packages/BioSequences/7i86L/src/search/pwm.jl:76 declares type variable T but does not use it.
│  WARNING: method definition for BroadcastStyle at /home/pkgeval/.julia/packages/BioSequences/7i86L/src/search/pwm.jl:76 declares type variable S but does not use it.
└  
┌ CAOS
│  ┌ Warning: This package has been depreceated, and should not be used for new projects. Please see BioTools.jl's repository README for more information.
│  └ @ BioTools ~/.julia/packages/BioTools/LY7H3/src/BioTools.jl:4
└  

Precompilation completed after 91.74s


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# Loading
#

Loading CAOS...
┌ Warning: This package has been depreceated, and should not be used for new projects. Please see BioTools.jl's repository README for more information.
└ @ BioTools ~/.julia/packages/BioTools/LY7H3/src/BioTools.jl:4

Loading completed after 4.27s

PkgEval succeeded after 139.29s