Package evaluation to test Atlans on Julia 1.13.0-DEV.1324 (c1d413cf8a*) started at 2025-10-17T21:23:21.707 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.61s ################################################################################ # Installation # Installing Atlans... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [1fcd1f08] + Atlans v0.1.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [66dad0bd] + AliasTables v1.1.3 [1fcd1f08] + Atlans v0.1.2 ⌅ [179af706] + CFTime v0.1.4 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [1fbeeb36] + CommonDataModel v0.4.1 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.0 [864edb3b] + DataStructures v0.19.1 [e2d170a0] + DataValueInterfaces v1.0.0 [3c3547ce] + DiskArrays v0.4.17 [ffbed154] + DocStringExtensions v0.9.5 [48062228] + FilePathsBase v0.9.24 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [85f8d34a] + NCDatasets v0.14.9 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [33c8b6b6] + ProgressLogging v0.1.5 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [5d786b92] + TerminalLoggers v0.1.7 [3bb67fe8] + TranscodingStreams v0.11.3 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [7243133f] + NetCDF_jll v401.900.300+0 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.1+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.4+0 [337d8026] + libzip_jll v1.11.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 10.73s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 68.74s ################################################################################ # Testing # Testing Atlans Status `/tmp/jl_RqPk7z/Project.toml` [1fcd1f08] Atlans v0.1.2 ⌅ [179af706] CFTime v0.1.4 [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.8.0 [e6f89c97] LoggingExtras v1.2.0 [85f8d34a] NCDatasets v0.14.9 [92933f4c] ProgressMeter v1.11.0 [3cdcf5f2] RecipesBase v1.3.4 [efcf1570] Setfield v1.1.2 [276daf66] SpecialFunctions v2.6.1 [2913bbd2] StatsBase v0.34.6 [5d786b92] TerminalLoggers v0.1.7 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_RqPk7z/Manifest.toml` [1520ce14] AbstractTrees v0.4.5 [66dad0bd] AliasTables v1.1.3 [1fcd1f08] Atlans v0.1.2 ⌅ [179af706] CFTime v0.1.4 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [1fbeeb36] CommonDataModel v0.4.1 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.0 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 [3c3547ce] DiskArrays v0.4.17 [ffbed154] DocStringExtensions v0.9.5 [48062228] FilePathsBase v0.9.24 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [8ac3fa9e] LRUCache v1.6.2 [b964fa9f] LaTeXStrings v1.4.0 [1d6d02ad] LeftChildRightSiblingTrees v0.2.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [85f8d34a] NCDatasets v0.14.9 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.0 [33c8b6b6] ProgressLogging v0.1.5 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [5d786b92] TerminalLoggers v0.1.7 [3bb67fe8] TranscodingStreams v0.11.3 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [0b7ba130] Blosc_jll v1.21.7+0 [6e34b625] Bzip2_jll v1.0.9+0 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.2+0 [94ce4f54] Libiconv_jll v1.18.0+0 [5ced341a] Lz4_jll v1.10.1+0 [7cb0a576] MPICH_jll v4.3.1+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [7243133f] NetCDF_jll v401.900.300+0 [fe0851c0] OpenMPI_jll v5.0.8+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [ffd25f8a] XZ_jll v5.8.1+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] libaec_jll v1.1.4+0 [337d8026] libzip_jll v1.11.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time Hydrostatic Groundwater | 13 13 9.7s Test Summary: | Pass Total Time CarbonStore | 3 3 0.2s Test Summary: | Pass Total Time SimpleShrinkage | 7 7 0.1s Test Summary: | Pass Total Time DrainingAbcIsotache | 4 4 0.3s Test Summary: | Pass Total Time ConsolidationColumn | 40 40 3.7s Test Summary: | Pass Total Time OxidationColumn | 5 5 0.4s Test Summary: | Pass Total Time ShrinkageColumn | 5 5 0.4s Test Summary: | Pass Total Time TimeSteppers | 4 4 0.1s Test Summary: | Pass Total Time Split column | 78 78 3.6s Test Summary: | Pass Total Time SoilColumn | 49 49 11.4s Test Summary: | Pass Total Time Input-Output | 42 42 1m39.0s Surcharge profile: Error During Test at /home/pkgeval/.julia/packages/Atlans/RMwUF/test/test_forcings.jl:89 Got exception outside of a @test ArgumentError: number of indices (3) must match the parent dimensionality (4) Stacktrace: [1] check_parent_index_match(parent::CommonDataModel.CFVariable{Float64, 4, NCDatasets.Variable{Float64, 4, NCDataset{Nothing, Missing}}, CommonDataModel.Attributes{NCDatasets.Variable{Float64, 4, NCDataset{Nothing, Missing}}}, @NamedTuple{fillvalue::Nothing, missing_values::Tuple{}, scale_factor::Nothing, add_offset::Nothing, calendar::Nothing, time_origin::Nothing, time_factor::Nothing, maskingvalue::Missing}}, ::Tuple{Bool, Bool, Bool}) @ Base ./subarray.jl:43 [2] check_parent_index_match(parent::CommonDataModel.CFVariable{Float64, 4, NCDatasets.Variable{Float64, 4, NCDataset{Nothing, Missing}}, CommonDataModel.Attributes{NCDatasets.Variable{Float64, 4, NCDataset{Nothing, Missing}}}, @NamedTuple{fillvalue::Nothing, missing_values::Tuple{}, scale_factor::Nothing, add_offset::Nothing, calendar::Nothing, time_origin::Nothing, time_factor::Nothing, maskingvalue::Missing}}, indices::Tuple{Base.Slice{Base.OneTo{Int64}}, Base.Slice{Base.OneTo{Int64}}, Int64}) @ Base ./subarray.jl:41 [3] SubArray @ ./subarray.jl:21 [inlined] [4] SubArray @ ./subarray.jl:32 [inlined] [5] SubArray @ ./subarray.jl:28 [inlined] [6] unsafe_view @ ./subarray.jl:251 [inlined] [7] view_disk @ ~/.julia/packages/DiskArrays/MEI2k/src/subarray.jl:65 [inlined] [8] view(::CommonDataModel.CFVariable{Float64, 4, NCDatasets.Variable{Float64, 4, NCDataset{Nothing, Missing}}, CommonDataModel.Attributes{NCDatasets.Variable{Float64, 4, NCDataset{Nothing, Missing}}}, @NamedTuple{fillvalue::Nothing, missing_values::Tuple{}, scale_factor::Nothing, add_offset::Nothing, calendar::Nothing, time_origin::Nothing, time_factor::Nothing, maskingvalue::Missing}}, ::Function, ::Function, ::Int64) @ CommonDataModel ~/.julia/packages/CommonDataModel/b3BkC/src/subvariable.jl:95 [9] maybeview @ ./views.jl:236 [inlined] [10] dotview @ ./broadcast.jl:1249 [inlined] [11] (::Main.AtlansFixtures.var"#surcharge_profiles_netcdf##0#surcharge_profiles_netcdf##1")(ds::NCDataset{Nothing, Missing}) @ Main.AtlansFixtures ~/.julia/packages/Atlans/RMwUF/test/fixtures.jl:486 [12] NCDataset(::Main.AtlansFixtures.var"#surcharge_profiles_netcdf##0#surcharge_profiles_netcdf##1", ::String, ::Vararg{String}; kwargs::@Kwargs{}) @ NCDatasets ~/.julia/packages/NCDatasets/76uhE/src/dataset.jl:252 [13] NCDataset @ ~/.julia/packages/NCDatasets/76uhE/src/dataset.jl:249 [inlined] [14] surcharge_profiles_netcdf() @ Main.AtlansFixtures ~/.julia/packages/Atlans/RMwUF/test/fixtures.jl:473 [15] top-level scope @ ~/.julia/packages/Atlans/RMwUF/test/test_forcings.jl:3 [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] [17] macro expansion @ ~/.julia/packages/Atlans/RMwUF/test/test_forcings.jl:90 [inlined] [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] [19] macro expansion @ ~/.julia/packages/Atlans/RMwUF/test/test_forcings.jl:91 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ ~/.julia/packages/Atlans/RMwUF/test/runtests.jl:26 [22] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [23] top-level scope @ none:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [26] _start() @ Base ./client.jl:577 Test Summary: | Pass Error Total Time Forcings | 19 1 20 32.1s stage indexation | 4 4 16.4s temperature | 2 2 0.3s deep subsidence | 2 2 0.1s stage change | 3 3 0.1s Simple surcharge | 8 8 11.4s Surcharge profile | 1 1 3.6s RNG of the outermost testset: Random.Xoshiro(0x6f2a0d9f9d64c551, 0x56f2a07b1ef9f668, 0xfbaec229dc8ba530, 0x37a83dd2367d8cf4, 0xe4056aa1c67bbd25) ERROR: LoadError: Some tests did not pass: 19 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/Atlans/RMwUF/test/test_forcings.jl:1 in expression starting at /home/pkgeval/.julia/packages/Atlans/RMwUF/test/runtests.jl:26 Testing failed after 202.34s ERROR: LoadError: Package Atlans errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2674 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2523 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:548 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:525 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 312.35s: package tests unexpectedly errored