Package evaluation of TrajGWAS on Julia 1.13.0-DEV.582 (c0a1728d50*) started at 2025-05-14T18:37:49.952 ################################################################################ # Set-up # Set-up completed after 0.28s ################################################################################ # Installation # Installing TrajGWAS... Resolving package versions... Installed InlineStrings ──────────────────── v1.4.3 Installed Glob ───────────────────────────── v1.3.1 Installed Bzip2_jll ──────────────────────── v1.0.9+0 Installed SIMDTypes ──────────────────────── v0.1.0 Installed CommonWorldInvalidations ───────── v1.0.0 Installed OrderedCollections ─────────────── v1.8.0 Installed HypothesisTests ────────────────── v0.11.5 Installed Optim ──────────────────────────── v1.12.0 Installed SentinelArrays ─────────────────── v1.4.8 Installed Ipopt_jll ──────────────────────── v300.1400.1700+0 Installed CpuId ──────────────────────────── v0.3.1 Installed MUMPS_seq_jll ──────────────────── v500.700.301+0 Installed NaNMath ────────────────────────── v1.1.3 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed StaticArrayInterface ───────────── v1.8.0 Installed QuadGK ─────────────────────────── v2.11.2 Installed WoodburyMatrices ───────────────── v0.5.6 Installed EnumX ──────────────────────────── v1.0.5 Installed NLSolversBase ──────────────────── v7.9.1 Installed Tables ─────────────────────────── v1.12.0 Installed InverseFunctions ───────────────── v0.1.17 Installed Reexport ───────────────────────── v1.2.2 Installed Preferences ────────────────────── v1.4.3 Installed Missings ───────────────────────── v1.2.0 Installed TableTraits ────────────────────── v1.0.1 Installed Static ─────────────────────────── v1.2.0 Installed LaTeXStrings ───────────────────── v1.4.0 Installed UnPack ─────────────────────────── v1.0.2 Installed Crayons ────────────────────────── v4.1.1 Installed DBInterface ────────────────────── v2.6.1 Installed SortingAlgorithms ──────────────── v1.2.1 Installed ADTypes ────────────────────────── v1.14.0 Installed DiffResults ────────────────────── v1.1.0 Installed ManualMemory ───────────────────── v0.1.8 Installed MacroTools ─────────────────────── v0.5.16 Installed CodecZstd ──────────────────────── v0.8.6 Installed DataStructures ─────────────────── v0.18.22 Installed FillArrays ─────────────────────── v1.13.0 Installed VCFTools ───────────────────────── v0.2.10 Installed CodecZlib ──────────────────────── v0.7.8 Installed DelimitedFiles ─────────────────── v1.9.1 Installed DataValueInterfaces ────────────── v1.0.0 Installed HostCPUFeatures ────────────────── v0.1.17 Installed StatsBase ──────────────────────── v0.34.5 Installed ArrayInterface ─────────────────── v7.19.0 Installed VectorizationBase ──────────────── v0.21.71 Installed CommonSubexpressions ───────────── v0.3.1 Installed IrrationalConstants ────────────── v0.2.4 Installed LayoutPointers ─────────────────── v0.1.17 Installed Hwloc_jll ──────────────────────── v2.12.0+0 Installed BufferedStreams ────────────────── v1.2.2 Installed SPRAL_jll ──────────────────────── v2024.5.8+0 Installed Setfield ───────────────────────── v1.1.2 Installed Roots ──────────────────────────── v2.2.7 Installed PooledArrays ───────────────────── v1.4.3 Installed PDMats ─────────────────────────── v0.11.35 Installed CodecXz ────────────────────────── v0.7.4 Installed WorkerUtilities ────────────────── v1.6.1 Installed DocStringExtensions ────────────── v0.9.4 Installed CompositionsBase ───────────────── v0.1.2 Installed CommonSolve ────────────────────── v0.2.4 Installed Rmath_jll ──────────────────────── v0.5.1+0 Installed BenchmarkTools ─────────────────── v1.6.0 Installed ForwardDiff ────────────────────── v1.0.1 Installed SLEEFPirates ───────────────────── v0.6.43 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed AliasTables ────────────────────── v1.1.3 Installed StatsModels ────────────────────── v0.7.4 Installed DifferentiationInterface ───────── v0.6.54 Installed Interpolations ─────────────────── v0.14.0 Installed ShiftedArrays ──────────────────── v2.0.0 Installed SQLite ─────────────────────────── v1.6.1 Installed Combinatorics ──────────────────── v1.0.3 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed SIMD ───────────────────────────── v3.7.1 Installed StaticArraysCore ───────────────── v1.4.3 Installed InvertedIndices ────────────────── v1.3.1 Installed DataAPI ────────────────────────── v1.16.0 Installed AxisAlgorithms ─────────────────── v1.0.1 Installed StaticArrays ───────────────────── v1.9.13 Installed Requires ───────────────────────── v1.3.1 Installed StringManipulation ─────────────── v0.4.1 Installed MathOptInterface ───────────────── v1.40.0 Installed LogExpFunctions ────────────────── v0.3.29 Installed PrettyTables ───────────────────── v2.4.0 Installed WiSER ──────────────────────────── v0.2.6 Installed DiffRules ──────────────────────── v1.15.1 Installed Rmath ──────────────────────────── v0.8.0 Installed FiniteDiff ─────────────────────── v2.27.0 Installed Parsers ────────────────────────── v2.8.3 Installed JSON ───────────────────────────── v0.21.4 Installed OpenBLAS32_jll ─────────────────── v0.3.29+0 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed StatsFuns ──────────────────────── v1.5.0 Installed BioGenerics ────────────────────── v0.1.5 Installed Distributions ──────────────────── v0.25.120 Installed DataFrames ─────────────────────── v1.7.0 Installed WeakRefStrings ─────────────────── v1.4.2 Installed XZ_jll ─────────────────────────── v5.8.1+0 Installed JLLWrappers ────────────────────── v1.7.0 Installed StructTypes ────────────────────── v1.11.0 Installed ThreadingUtilities ─────────────── v0.5.3 Installed CategoricalArrays ──────────────── v0.10.8 Installed MutableArithmetics ─────────────── v1.6.4 Installed Accessors ──────────────────────── v0.1.42 Installed FilePathsBase ──────────────────── v0.9.24 Installed NLopt ──────────────────────────── v0.6.5 Installed Adapt ──────────────────────────── v4.3.0 Installed BGZFStreams ────────────────────── v0.3.2 Installed ConstructionBase ───────────────── v1.5.8 Installed HypergeometricFunctions ────────── v0.3.28 Installed TranscodingStreams ─────────────── v0.9.13 Installed VariantCallFormat ──────────────── v0.5.6 Installed Compat ─────────────────────────── v4.16.0 Installed LoopVectorization ──────────────── v0.12.172 Installed Statistics ─────────────────────── v1.11.1 Installed StatsAPI ───────────────────────── v1.7.0 Installed OffsetArrays ───────────────────── v1.17.0 Installed ProgressMeter ──────────────────── v1.10.4 Installed PositiveFactorizations ─────────── v0.2.4 Installed ASL_jll ────────────────────────── v0.1.3+0 Installed PrecompileTools ────────────────── v1.3.2 Installed TrajGWAS ───────────────────────── v0.4.6 Installed Ratios ─────────────────────────── v0.4.5 Installed IfElse ─────────────────────────── v0.1.1 Installed CPUSummary ─────────────────────── v0.2.6 Installed Parameters ─────────────────────── v0.12.3 Installed JSON3 ──────────────────────────── v1.14.2 Installed ChainRulesCore ─────────────────── v1.25.1 Installed CodecBzip2 ─────────────────────── v0.8.5 Installed PtrArrays ──────────────────────── v1.3.0 Installed LineSearches ───────────────────── v7.3.0 Installed Zstd_jll ───────────────────────── v1.5.7+1 Installed SpecialFunctions ───────────────── v2.5.1 Installed SQLite_jll ─────────────────────── v3.48.0+0 Installed METIS_jll ──────────────────────── v5.1.3+0 Installed PolyesterWeave ─────────────────── v0.2.2 Installed CSV ────────────────────────────── v0.10.15 Installed NLopt_jll ──────────────────────── v2.10.0+0 Installed Ipopt ──────────────────────────── v1.10.3 Installed MathProgBase ───────────────────── v0.7.8 Installed Automa ─────────────────────────── v0.8.4 Installed SnpArrays ──────────────────────── v0.3.22 Installed BGEN ───────────────────────────── v0.1.17 Installing 14 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Zstd 646.0 KiB Installed artifact NLopt 322.7 KiB Installed artifact SPRAL 689.5 KiB Installed artifact XZ 1.5 MiB Installed artifact Rmath 121.9 KiB Installed artifact ASL 276.3 KiB Installed artifact METIS 1.1 MiB Installed artifact Ipopt 1.3 MiB Installed artifact SQLite 5.0 MiB Installed artifact Bzip2 503.5 KiB Installed artifact Hwloc 3.5 MiB Installed artifact MUMPS_seq 8.9 MiB Installed artifact OpenBLAS32 10.0 MiB Updating `~/.julia/environments/v1.13/Project.toml` [9514c204] + TrajGWAS v0.4.6 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.19.0 ⌅ [67c07d97] + Automa v0.8.4 ⌃ [13072b0f] + AxisAlgorithms v1.0.1 ⌅ [6db4b851] + BGEN v0.1.17 [28d598bf] + BGZFStreams v0.3.2 [6e4b80f9] + BenchmarkTools v1.6.0 [47718e42] + BioGenerics v0.1.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [2a0fbf3d] + CPUSummary v0.2.6 [336ed68f] + CSV v0.10.15 [324d7699] + CategoricalArrays v0.10.8 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [523fee87] + CodecBzip2 v0.8.5 [ba30903b] + CodecXz v0.7.4 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [861a8166] + Combinatorics v1.0.3 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [a10d1c49] + DBInterface v2.6.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 ⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [f6369f11] + ForwardDiff v1.0.1 [c27321d9] + Glob v1.3.1 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.28 [09f84164] + HypothesisTests v0.11.5 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.3 ⌅ [a98d9a8b] + Interpolations v0.14.0 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [b6b21f68] + Ipopt v1.10.3 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.2 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [d3d80556] + LineSearches v7.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.172 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [b8f27783] + MathOptInterface v1.40.0 [fdba3010] + MathProgBase v0.7.8 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.6.4 [d41bc354] + NLSolversBase v7.9.1 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.12.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [f2b01f46] + Roots v2.2.7 [fdea26ae] + SIMD v3.7.1 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [0aa819cd] + SQLite v1.6.1 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [4e780e97] + SnpArrays v0.3.22 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [8290d209] + ThreadingUtilities v0.5.3 [9514c204] + TrajGWAS v0.4.6 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [3a884ed6] + UnPack v1.0.2 [a620830f] + VCFTools v0.2.10 [28eba6e3] + VariantCallFormat v0.5.6 [3d5dd08c] + VectorizationBase v0.21.71 [ea10d353] + WeakRefStrings v1.4.2 [2ff19380] + WiSER v0.2.6 ⌅ [efce3f68] + WoodburyMatrices v0.5.6 [76eceee3] + WorkerUtilities v1.6.1 [ae81ac8f] + ASL_jll v0.1.3+0 [6e34b625] + Bzip2_jll v1.0.9+0 [e33a78d0] + Hwloc_jll v2.12.0+0 [9cc047cb] + Ipopt_jll v300.1400.1700+0 [d00139f3] + METIS_jll v5.1.3+0 ⌅ [d7ed1dd3] + MUMPS_seq_jll v500.700.301+0 [079eb43e] + NLopt_jll v2.10.0+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [319450e9] + SPRAL_jll v2024.5.8+0 [76ed43ae] + SQLite_jll v3.48.0+0 [ffd25f8a] + XZ_jll v5.8.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.2.25 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 23.23s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 1105.5 ms ✓ Glob 1169.4 ms ✓ DocStringExtensions 945.6 ms ✓ ManualMemory 734.2 ms ✓ DataValueInterfaces 2310.6 ms ✓ IrrationalConstants 843.8 ms ✓ LaTeXStrings 826.0 ms ✓ UnPack 2141.6 ms ✓ Combinatorics 1058.3 ms ✓ WorkerUtilities 1234.3 ms ✓ Requires 1145.5 ms ✓ ConstructionBase 1206.2 ms ✓ Statistics 818.0 ms ✓ CommonSolve 748.3 ms ✓ SIMDTypes 918.1 ms ✓ DBInterface 850.1 ms ✓ DataAPI 1733.1 ms ✓ InlineStrings 948.8 ms ✓ InvertedIndices 973.3 ms ✓ StatsAPI 4460.8 ms ✓ MacroTools 1319.6 ms ✓ OrderedCollections 742.6 ms ✓ IteratorInterfaceExtensions 1358.9 ms ✓ ADTypes 1087.0 ms ✓ BufferedStreams 1895.3 ms ✓ Crayons 1677.0 ms ✓ OffsetArrays 779.6 ms ✓ IfElse 1479.9 ms ✓ EnumX 2066.9 ms ✓ FillArrays 1427.8 ms ✓ PositiveFactorizations 1263.4 ms ✓ DelimitedFiles 849.7 ms ✓ ShiftedArrays 804.6 ms ✓ PtrArrays 805.3 ms ✓ CommonWorldInvalidations 949.0 ms ✓ StaticArraysCore 752.7 ms ✓ Reexport 861.9 ms ✓ CompositionsBase 1007.3 ms ✓ InverseFunctions 1317.8 ms ✓ SuiteSparse 1103.4 ms ✓ NaNMath 1521.3 ms ✓ WoodburyMatrices 2208.8 ms ✓ MathProgBase 1986.5 ms ✓ ProgressMeter 2150.5 ms ✓ CpuId 4075.6 ms ✓ SentinelArrays 1957.1 ms ✓ StructTypes 1299.3 ms ✓ Preferences 1320.8 ms ✓ Compat 2575.1 ms ✓ TranscodingStreams 11068.8 ms ✓ MutableArithmetics 1930.4 ms ✓ ThreadingUtilities 1500.6 ms ✓ LogExpFunctions 869.5 ms ✓ Ratios 1109.7 ms ✓ Adapt 980.6 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1392.6 ms ✓ Statistics → SparseArraysExt 1149.0 ms ✓ Missings 1228.4 ms ✓ PooledArrays 1886.9 ms ✓ CommonSubexpressions 1102.5 ms ✓ Parameters 891.3 ms ✓ TableTraits 2040.4 ms ✓ DifferentiationInterface 991.6 ms ✓ ADTypes → ADTypesConstructionBaseExt 1052.3 ms ✓ FillArrays → FillArraysStatisticsExt 1551.1 ms ✓ FillArrays → FillArraysSparseArraysExt 1192.2 ms ✓ AliasTables 1028.6 ms ✓ DiffResults 2017.8 ms ✓ InverseFunctions → InverseFunctionsTestExt 1040.9 ms ✓ InverseFunctions → InverseFunctionsDatesExt 981.2 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1913.0 ms ✓ PDMats 1487.0 ms ✓ AxisAlgorithms 1055.7 ms ✓ PrecompileTools 1265.8 ms ✓ JLLWrappers 1023.8 ms ✓ Compat → CompatLinearAlgebraExt 2491.2 ms ✓ Automa 1834.8 ms ✓ CodecZlib 1846.7 ms ✓ BioGenerics 967.2 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1366.2 ms ✓ Adapt → AdaptSparseArraysExt 1264.1 ms ✓ ArrayInterface 1018.7 ms ✓ OffsetArrays → OffsetArraysAdaptExt 3205.1 ms ✓ Setfield 6945.5 ms ✓ CategoricalArrays 1857.3 ms ✓ Tables 1449.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 5585.9 ms ✓ Accessors 1490.3 ms ✓ FillArrays → FillArraysPDMatsExt 3413.2 ms ✓ StringManipulation 18412.7 ms ✓ SIMD 14155.9 ms ✓ StaticArrays 17856.3 ms ✓ Parsers 5698.0 ms ✓ Static 1603.6 ms ✓ XZ_jll 1669.5 ms ✓ OpenSpecFun_jll 1536.8 ms ✓ Rmath_jll 1550.4 ms ✓ METIS_jll 1499.1 ms ✓ ASL_jll 1511.7 ms ✓ Hwloc_jll 1553.2 ms ✓ Zstd_jll 1565.3 ms ✓ NLopt_jll 1559.5 ms ✓ OpenBLAS32_jll 1502.6 ms ✓ SQLite_jll 1489.6 ms ✓ Bzip2_jll 2891.2 ms ✓ ChainRulesCore 2692.4 ms ✓ FilePathsBase 4552.2 ms ✓ DataStructures 1989.0 ms ✓ BGZFStreams 1423.4 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 950.9 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1296.3 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 1215.9 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt 2800.9 ms ✓ Accessors → LinearAlgebraExt 2198.3 ms ✓ Accessors → TestExt 31108.1 ms ✓ PrettyTables 1634.2 ms ✓ StaticArrays → StaticArraysStatisticsExt 1600.2 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1548.0 ms ✓ Adapt → AdaptStaticArraysExt 1551.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 2610.9 ms ✓ Accessors → StaticArraysExt 16906.8 ms ✓ JSON3 4263.1 ms ✓ JSON 1144.5 ms ✓ InlineStrings → ParsersExt 1092.4 ms ✓ BitTwiddlingConvenienceFunctions 2687.1 ms ✓ CPUSummary 9343.8 ms ✓ StaticArrayInterface 2156.3 ms ✓ CodecXz 5698.5 ms ✓ SpecialFunctions 1849.4 ms ✓ Rmath 1694.6 ms ✓ MUMPS_seq_jll 1708.7 ms ✓ SPRAL_jll 3380.4 ms ✓ CodecZstd 2175.2 ms ✓ CodecBzip2 1492.0 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 1065.5 ms ✓ ADTypes → ADTypesChainRulesCoreExt 3560.1 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1135.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 1061.9 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 1686.6 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1396.8 ms ✓ FilePathsBase → FilePathsBaseMmapExt 3510.6 ms ✓ FilePathsBase → FilePathsBaseTestExt 3312.8 ms ✓ QuadGK 2124.7 ms ✓ SortingAlgorithms 18266.4 ms ✓ VariantCallFormat 1459.7 ms ✓ FiniteDiff 7413.7 ms ✓ Roots 3186.0 ms ✓ BenchmarkTools 1258.6 ms ✓ CategoricalArrays → CategoricalArraysJSONExt 2650.8 ms ✓ WeakRefStrings 1621.7 ms ✓ HostCPUFeatures 2395.8 ms ✓ PolyesterWeave 1268.3 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1813.3 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1335.4 ms ✓ CloseOpenIntervals 1522.2 ms ✓ LayoutPointers 4533.1 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2763.0 ms ✓ HypergeometricFunctions 1492.9 ms ✓ DiffRules 1867.6 ms ✓ Ipopt_jll 4812.5 ms ✓ Interpolations 5461.0 ms ✓ StatsBase 86759.1 ms ✓ DataFrames 1565.2 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1405.0 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1167.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 1425.4 ms ✓ Roots → RootsChainRulesCoreExt 4468.6 ms ✓ SQLite 32412.8 ms ✓ CSV 17075.4 ms ✓ VectorizationBase 3290.0 ms ✓ StatsFuns 9358.4 ms ✓ ForwardDiff 1636.3 ms ✓ Ipopt 8489.7 ms ✓ BGEN 5862.3 ms ✓ SLEEFPirates 3828.0 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1360.5 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 5150.9 ms ✓ StatsModels 10417.9 ms ✓ Distributions 3826.8 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 2066.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 2291.2 ms ✓ Roots → RootsForwardDiffExt 80057.7 ms ✓ MathOptInterface 44691.4 ms ✓ LoopVectorization 3977.0 ms ✓ Distributions → DistributionsTestExt 4245.6 ms ✓ Distributions → DistributionsChainRulesCoreExt 5657.9 ms ✓ HypothesisTests 4614.7 ms ✓ NLSolversBase 9761.3 ms ✓ NLopt 50774.0 ms ✓ Ipopt → IpoptMathOptInterfaceExt 6002.8 ms ✓ LoopVectorization → ForwardDiffExt 5654.2 ms ✓ LoopVectorization → SpecialFunctionsExt 5125.5 ms ✓ VCFTools 6679.9 ms ✓ LineSearches 23443.3 ms ✓ WiSER ✗ SnpArrays 10960.2 ms ✓ Optim 7196.6 ms ✓ Optim → OptimMOIExt ✗ TrajGWAS 196 dependencies successfully precompiled in 961 seconds. 38 already precompiled. 3 dependencies had output during precompilation: ┌ Interpolations │ WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/Interpolations.jl:454 declares type variable N but does not use it. │ WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/Interpolations.jl:457 declares type variable N but does not use it. │ WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/gridded/gridded.jl:37 declares type variable pad but does not use it. │ WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/gridded/gridded.jl:60 declares type variable pad but does not use it. │ WARNING: method definition for interpolate! at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/deprecations.jl:30 declares type variable TWeights but does not use it. └ ┌ VariantCallFormat │ [ Info: Compiling VCF parser... └ ┌ VectorizationBase │ WARNING: Constructor for type "Int16" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Int16" refers to `Base.Int16`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Int16 end`. │ Hint: To silence the warning, qualify `Int16` as `Base.Int16` in the method signature or explicitly `import Base: Int16`. │ WARNING: Constructor for type "Int64" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Int64" refers to `Base.Int64`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Int64 end`. │ Hint: To silence the warning, qualify `Int64` as `Base.Int64` in the method signature or explicitly `import Base: Int64`. │ WARNING: Constructor for type "Int32" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Int32" refers to `Base.Int32`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Int32 end`. │ Hint: To silence the warning, qualify `Int32` as `Base.Int32` in the method signature or explicitly `import Base: Int32`. │ WARNING: Constructor for type "UInt8" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "UInt8" refers to `Base.UInt8`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function UInt8 end`. │ Hint: To silence the warning, qualify `UInt8` as `Base.UInt8` in the method signature or explicitly `import Base: UInt8`. │ WARNING: Constructor for type "UInt16" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "UInt16" refers to `Base.UInt16`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function UInt16 end`. │ Hint: To silence the warning, qualify `UInt16` as `Base.UInt16` in the method signature or explicitly `import Base: UInt16`. │ WARNING: Constructor for type "Float32" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Float32" refers to `Base.Float32`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Float32 end`. │ Hint: To silence the warning, qualify `Float32` as `Base.Float32` in the method signature or explicitly `import Base: Float32`. │ WARNING: Constructor for type "UInt64" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "UInt64" refers to `Base.UInt64`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function UInt64 end`. │ Hint: To silence the warning, qualify `UInt64` as `Base.UInt64` in the method signature or explicitly `import Base: UInt64`. │ WARNING: Constructor for type "Bool" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Bool" refers to `Base.Bool`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Bool end`. │ Hint: To silence the warning, qualify `Bool` as `Base.Bool` in the method signature or explicitly `import Base: Bool`. │ WARNING: Constructor for type "Int8" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Int8" refers to `Base.Int8`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Int8 end`. │ Hint: To silence the warning, qualify `Int8` as `Base.Int8` in the method signature or explicitly `import Base: Int8`. │ WARNING: Constructor for type "Float64" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Float64" refers to `Base.Float64`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Float64 end`. │ Hint: To silence the warning, qualify `Float64` as `Base.Float64` in the method signature or explicitly `import Base: Float64`. │ WARNING: Constructor for type "UInt32" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "UInt32" refers to `Base.UInt32`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function UInt32 end`. │ Hint: To silence the warning, qualify `UInt32` as `Base.UInt32` in the method signature or explicitly `import Base: UInt32`. │ WARNING: Constructor for type "Float16" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Float16" refers to `Base.Float16`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Float16 end`. │ Hint: To silence the warning, qualify `Float16` as `Base.Float16` in the method signature or explicitly `import Base: Float16`. └ ERROR: LoadError: The following 1 direct dependency failed to precompile: TrajGWAS Failed to precompile TrajGWAS [9514c204-b736-47c9-8157-11c3e9e5ab30] to "/home/pkgeval/.julia/compiled/v1.13/TrajGWAS/jl_sdJ5km" (ProcessExited(1)). ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace: [1] top-level scope @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2983 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2829 [7] include_string @ ./loading.jl:2839 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [9] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.13/SnpArrays/jl_P53VHE" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3270 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3841 [11] maybe_cachefile_lock @ ./loading.jl:3838 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [14] macro expansion @ ./loading.jl:2394 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [17] require @ ./loading.jl:2335 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/TrajGWAS/R4aGq/src/TrajGWAS.jl:3 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2983 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2829 [27] include_string @ ./loading.jl:2839 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [29] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/TrajGWAS/R4aGq/src/TrajGWAS.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 965.27s ################################################################################ # Loading # Loading TrajGWAS... Precompiling packages... ✗ SnpArrays Info Given TrajGWAS was explicitly requested, output will be shown live  ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace:  [1] top-level scope  @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:2983  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2829  [7] include_string  @ ./loading.jl:2839 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:329  [9] _start()  @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.13/SnpArrays/jl_lNqsSO" (ProcessExited(1)). Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3270  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()  @ Base ./loading.jl:2652  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})  @ Base ./reflection.jl:1279  [8] #invokelatest_gr#232  @ ./reflection.jl:1287 [inlined]  [9] invokelatest_gr  @ ./reflection.jl:1281 [inlined]  [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3841  [11] maybe_cachefile_lock  @ ./loading.jl:3838 [inlined]  [12] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2638  [13] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2466  [14] macro expansion  @ ./loading.jl:2394 [inlined]  [15] macro expansion  @ ./lock.jl:376 [inlined]  [16] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2359  [17] require  @ ./loading.jl:2335 [inlined]  [18] eval_import_path  @ ./module.jl:36 [inlined]  [19] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [20] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [21] top-level scope  @ ~/.julia/packages/TrajGWAS/R4aGq/src/TrajGWAS.jl:3  [22] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:2983  [24] top-level scope  @ stdin:5  [25] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2829  [27] include_string  @ ./loading.jl:2839 [inlined]  [28] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:329  [29] _start()  @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/TrajGWAS/R4aGq/src/TrajGWAS.jl:1 in expression starting at stdin:5 ✗ TrajGWAS 0 dependencies successfully precompiled in 69 seconds. 234 already precompiled. ERROR: The following 1 direct dependency failed to precompile: TrajGWAS Failed to precompile TrajGWAS [9514c204-b736-47c9-8157-11c3e9e5ab30] to "/home/pkgeval/.julia/compiled/v1.13/TrajGWAS/jl_IwEAtm" (ProcessExited(1)). ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace: [1] top-level scope @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2983 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2829 [7] include_string @ ./loading.jl:2839 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [9] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.13/SnpArrays/jl_lNqsSO" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3270 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3841 [11] maybe_cachefile_lock @ ./loading.jl:3838 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [14] macro expansion @ ./loading.jl:2394 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [17] require @ ./loading.jl:2335 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/TrajGWAS/R4aGq/src/TrajGWAS.jl:3 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2983 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2829 [27] include_string @ ./loading.jl:2839 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [29] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/TrajGWAS/R4aGq/src/TrajGWAS.jl:1 in expression starting at stdin: Loading failed after 72.0s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using TrajGWAS'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run(::Cmd) @ Base ./process.jl:514 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:309 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:331 [7] _start() @ Base ./client.jl:564 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 1088.67s: package fails to precompile