Package evaluation of Stheno on Julia 1.13.0-DEV.582 (c0a1728d50*) started at 2025-05-14T13:28:57.627 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.79s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.1 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.25.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.4 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.12.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.1s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 38.29s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_D318gE/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.32 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.28 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_D318gE/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.1 [a9b6321e] Atomix v1.1.1 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.3 [d360d2e6] ChainRulesCore v1.25.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.5.8 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.4 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [f6369f11] ForwardDiff v1.0.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.2 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.14 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.34 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.3.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.3.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.28 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.35+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.2.25 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 9794.2 ms ✓ Documenter 1 dependency successfully precompiled in 10 seconds. 27 already precompiled. Precompiling packages... 3183.0 ms ✓ FiniteDifferences 1 dependency successfully precompiled in 3 seconds. 18 already precompiled. Precompiling packages... 5622.8 ms ✓ LLVMExtra_jll 9340.2 ms ✓ KernelAbstractions 21731.4 ms ✓ LLVM 3455.7 ms ✓ KernelAbstractions → SparseArraysExt 2914.7 ms ✓ KernelAbstractions → LinearAlgebraExt 2996.6 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 9043.2 ms ✓ UnsafeAtomics → UnsafeAtomicsLLVM 16695.3 ms ✓ GPUArrays 80295.1 ms ✓ Zygote 9 dependencies successfully precompiled in 153 seconds. 95 already precompiled. Precompiling packages... 5106.5 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1 dependency successfully precompiled in 6 seconds. 21 already precompiled. Precompiling packages... 10883.4 ms ✓ Zygote → ZygoteDistancesExt 1 dependency successfully precompiled in 12 seconds. 108 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: WARNING: Detected access to binding `Main._to_psd` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `Main.#70#71` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. doctests WARNING: Detected access to binding `Stheno.##docmeta#278` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 20m55.6s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1275s / 98.4% 29.6GiB / 99.3% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 801s 63.8% 801s 20.6GiB 70.0% 20.6GiB addition 1 434s 34.6% 434s 12.0GiB 40.9% 12.0GiB Standardised Tests (correlated sum) 1 241s 19.2% 241s 6.55GiB 22.3% 6.55GiB adj_ad 9 33.8s 2.7% 3.75s 1.05GiB 3.6% 120MiB adj_fd 9 8.98s 0.7% 998ms 213MiB 0.7% 23.7MiB Standardised Tests (independent sum) 1 140s 11.1% 140s 5.15GiB 17.5% 5.15GiB adj_ad 9 26.3s 2.1% 2.92s 1.27GiB 4.3% 144MiB adj_fd 9 9.92s 0.8% 1.10s 198MiB 0.7% 22.0MiB Correlated GPs 1 50.1s 4.0% 50.1s 294MiB 1.0% 294MiB Consistency Tests 1 21.3s 1.7% 21.3s 128MiB 0.4% 128MiB Verify mean / kernel numerically 1 3.21s 0.3% 3.21s 43.1MiB 0.1% 43.1MiB Consistency Tests 1 1.75s 0.1% 1.75s 14.7MiB 0.0% 14.7MiB product 1 176s 14.0% 176s 3.97GiB 13.5% 3.97GiB multiply by function 1 105s 8.4% 105s 2.18GiB 7.4% 2.18GiB Diff Tests 1 57.9s 4.6% 57.9s 1.63GiB 5.6% 1.63GiB adj_ad 9 22.1s 1.8% 2.45s 900MiB 3.0% 100MiB adj_fd 9 6.63s 0.5% 737ms 115MiB 0.4% 12.8MiB Consistency Tests 1 7.24s 0.6% 7.24s 110MiB 0.4% 110MiB multiply by constant 1 70.2s 5.6% 70.2s 1.80GiB 6.1% 1.80GiB Diff Tests 1 53.2s 4.2% 53.2s 1.74GiB 5.9% 1.74GiB adj_ad 9 18.0s 1.4% 2.00s 828MiB 2.7% 92.0MiB adj_fd 9 10.8s 0.9% 1.20s 191MiB 0.6% 21.2MiB Consistency Tests 1 4.67s 0.4% 4.67s 20.3MiB 0.1% 20.3MiB GP mul errors 1 16.8ms 0.0% 16.8ms 40.2KiB 0.0% 40.2KiB compose 1 89.7s 7.1% 89.7s 2.31GiB 7.8% 2.31GiB general 1 55.4s 4.4% 55.4s 1.55GiB 5.3% 1.55GiB Diff Tests 1 48.1s 3.8% 48.1s 1.49GiB 5.1% 1.49GiB adj_ad 9 15.1s 1.2% 1.68s 731MiB 2.4% 81.2MiB adj_fd 9 6.17s 0.5% 685ms 114MiB 0.4% 12.6MiB Consistency Tests 1 5.80s 0.5% 5.80s 39.7MiB 0.1% 39.7MiB Stretch 1 27.5s 2.2% 27.5s 665MiB 2.2% 665MiB scalar stretch 1 26.6s 2.1% 26.6s 652MiB 2.2% 652MiB scalar input 1 25.8s 2.1% 25.8s 648MiB 2.2% 648MiB adj_fd 9 8.73s 0.7% 970ms 179MiB 0.6% 19.9MiB adj_ad 9 3.90s 0.3% 433ms 144MiB 0.5% 16.0MiB vector input 1 826ms 0.1% 826ms 3.37MiB 0.0% 3.37MiB Vector stretch 1 690ms 0.1% 690ms 9.80MiB 0.0% 9.80MiB Matrix stretch 1 145ms 0.0% 145ms 3.07MiB 0.0% 3.07MiB Shift 1 3.74s 0.3% 3.74s 41.6MiB 0.1% 41.6MiB Shift{Vector{Float64}} 1 1.88s 0.1% 1.88s 14.9MiB 0.0% 14.9MiB Shift{Float64} 1 1.86s 0.1% 1.86s 26.6MiB 0.1% 26.6MiB Select 1 1.74s 0.1% 1.74s 33.9MiB 0.1% 33.9MiB evaluation 1 781ms 0.1% 781ms 21.7MiB 0.1% 21.7MiB idx isa Vector 1 551ms 0.0% 551ms 7.94MiB 0.0% 7.94MiB idx isa Integer 1 411ms 0.0% 411ms 4.22MiB 0.0% 4.22MiB Periodic 1 1.30s 0.1% 1.30s 34.5MiB 0.1% 34.5MiB cross 1 31.4s 2.5% 31.4s 1.39GiB 4.7% 1.39GiB block arrays 1 16.7s 1.3% 16.7s 782MiB 2.6% 782MiB Stheno._collect ∘ _mortar 1 13.7s 1.1% 13.7s 661MiB 2.2% 661MiB BlockMatrix 1 6.88s 0.5% 6.88s 368MiB 1.2% 368MiB adj_fd 1 154ms 0.0% 154ms 98.8MiB 0.3% 98.8MiB adj_ad 1 64.4ms 0.0% 64.4ms 2.40MiB 0.0% 2.40MiB BlockVector 1 6.79s 0.5% 6.79s 294MiB 1.0% 294MiB adj_ad 1 234ms 0.0% 234ms 16.0MiB 0.1% 16.0MiB adj_fd 1 331μs 0.0% 331μs 434KiB 0.0% 434KiB fdm stuff 1 3.03s 0.2% 3.03s 120MiB 0.4% 120MiB Correctness tests 1 8.68s 0.7% 8.68s 402MiB 1.3% 402MiB Standardised Tests 1 6.02s 0.5% 6.02s 241MiB 0.8% 241MiB gp 1 219s 17.4% 219s 4.50GiB 15.3% 4.50GiB sparse gp 1 24.0s 1.9% 24.0s 380MiB 1.3% 380MiB SparseFiniteGP inference 1 17.8s 1.4% 17.8s 260MiB 0.9% 260MiB SparseFiniteGP methods 1 5.78s 0.5% 5.78s 115MiB 0.4% 115MiB SparseFiniteGP Constructors 1 450ms 0.0% 450ms 4.08MiB 0.0% 4.08MiB adj_ad 2 22.3s 1.8% 11.2s 903MiB 3.0% 451MiB gp 1 17.4s 1.4% 17.4s 265MiB 0.9% 265MiB GP 1 17.0s 1.4% 17.0s 262MiB 0.9% 262MiB independent GPs 1 366ms 0.0% 366ms 2.72MiB 0.0% 2.72MiB wrapped AbstractGP 1 15.1ms 0.0% 15.1ms 290KiB 0.0% 290KiB adj_fd 2 8.46ms 0.0% 4.23ms 6.06MiB 0.0% 3.03MiB derived_gp 1 201μs 0.0% 201μs 1.67KiB 0.0% 1.67KiB gaussian_process_probabilistic_programme 1 150s 11.9% 150s 2.33GiB 7.9% 2.33GiB Zygote 1 22.9s 1.8% 22.9s 1.00GiB 3.4% 1.00GiB nested gppp 1 17.5s 1.4% 17.5s 87.0MiB 0.3% 87.0MiB External Consistency 1 16.9s 1.3% 16.9s 100MiB 0.3% 100MiB split 1 699ms 0.1% 699ms 12.1MiB 0.0% 12.1MiB gppp macro 1 63.1ms 0.0% 63.1ms 576KiB 0.0% 576KiB doctests 1 76.4s 6.1% 76.4s 1.72GiB 5.9% 1.72GiB BlockData 1 8.77s 0.7% 8.77s 267MiB 0.9% 267MiB vcat(::GPPPInput...) 1 2.65s 0.2% 2.65s 102MiB 0.3% 102MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1475.73s PkgEval succeeded after 1549.85s