Package evaluation of Pickle on Julia 1.13.0-DEV.582 (c0a1728d50*) started at 2025-05-14T15:08:17.179 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.06s ################################################################################ # Installation # Installing Pickle... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [fbb45041] + Pickle v0.3.5 Updating `~/.julia/environments/v1.13/Manifest.toml` [ab4f0b2a] + BFloat16s v0.5.1 [34da2185] + Compat v4.16.0 [864edb3b] + DataStructures v0.18.22 [7d512f48] + InternedStrings v0.7.0 [692b3bcd] + JLLWrappers v1.7.0 [bac558e1] + OrderedCollections v1.8.0 [65ce6f38] + PackageExtensionCompat v1.0.2 [fbb45041] + Pickle v0.3.5 [21216c6a] + Preferences v1.4.3 ⌅ [4db3bf67] + StridedViews v0.2.2 [69024149] + StringEncodings v0.3.7 [a5390f91] + ZipFile v0.10.1 [94ce4f54] + Libiconv_jll v1.18.0+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.2s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 19.72s ################################################################################ # Testing # Testing Pickle Status `/tmp/jl_vo8Z6w/Project.toml` [992eb4ea] CondaPkg v0.2.28 [e30172f5] Documenter v1.11.2 [fbb45041] Pickle v0.3.5 [6099a3de] PythonCall v0.9.25 ⌃ [5e0ebb24] Strided v2.1.1 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_vo8Z6w/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [ab4f0b2a] BFloat16s v0.5.1 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.16.0 [992eb4ea] CondaPkg v0.2.28 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [ffbed154] DocStringExtensions v0.9.4 [e30172f5] Documenter v1.11.2 [d7ba0133] Git v1.4.0 [b5f81e59] IOCapture v0.2.5 [7d512f48] InternedStrings v0.7.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.2 [0e77f7df] LazilyInitializedFields v1.3.0 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.2 [0b3b1443] MicroMamba v0.1.14 [bac558e1] OrderedCollections v1.8.0 [65ce6f38] PackageExtensionCompat v1.0.2 [69de0a69] Parsers v2.8.3 [fbb45041] Pickle v0.3.5 [fa939f87] Pidfile v1.3.0 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [6099a3de] PythonCall v0.9.25 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [6c6a2e73] Scratch v1.2.1 ⌃ [5e0ebb24] Strided v2.1.1 ⌅ [4db3bf67] StridedViews v0.2.2 [69024149] StringEncodings v0.3.7 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [3bb67fe8] TranscodingStreams v0.11.3 [9d95972d] TupleTools v1.6.0 [e17b2a0c] UnsafePointers v1.0.0 [a5390f91] ZipFile v0.10.1 [2e619515] Expat_jll v2.6.5+0 [f8c6e375] Git_jll v2.49.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [9bd350c2] OpenSSH_jll v10.0.1+0 [f8abcde7] micromamba_jll v1.5.8+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.2.25 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.0+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 6136.7 ms ✓ Pickle 1 dependency successfully precompiled in 6 seconds. 30 already precompiled. CondaPkg Found dependencies: /tmp/jl_vo8Z6w/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/L4cjh/CondaPkg.toml CondaPkg Resolving changes + numpy + openssl + python + pytorch + scipy CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_vo8Z6w/.CondaPkg ✔ Created /tmp/jl_vo8Z6w/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_vo8Z6w/.CondaPkg/pixi.toml │ [dependencies] │ scipy = "*" │ openssl = ">=3, <3.6" │ pytorch = "<1.11" │ numpy = "*" │ │ [dependencies.python] │ build = "*cpython*" │ channel = "conda-forge" │ version = ">=3.8,<4" │ │ [project] │ description = "automatically generated by CondaPkg.jl" │ name = ".CondaPkg" │ channel-priority = "strict" │ platforms = ["linux-64"] └ channels = ["conda-forge"] CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_vo8Z6w/.CondaPkg/pixi.toml ✔ The default environment has been installed. [ Info: BATCHSIZE is set to: 3 [ Info: Test doctest ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter ~/.julia/packages/Documenter/xE0sx/src/utilities/utilities.jl:665 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). [ Info: Test LOAD [ Info: protocal 0 [ Info: protocal 1 [ Info: protocal 2 [ Info: protocal 3 [ Info: protocal 4 [ Info: protocal 0 [ Info: protocal 1 [ Info: protocal 2 [ Info: protocal 3 [ Info: protocal 4 [ Info: Test STORE [ Info: protocal 0 [ Info: protocal 1 [ Info: protocal 2 [ Info: protocal 3 [ Info: protocal 4 [ Info: Test NP [ Info: Test SPARSE [ Info: Test Pickle.Torch [ Info: Test Torch LOAD [ Info: Test Torch LOAD_ZIP [ Info: Test Torch SAVE [ Info: Test Torch PREBUILD PREBUILD: Error During Test at /home/pkgeval/.julia/packages/Pickle/xJNoA/test/torch/torch_prebuild.jl:7 Test threw exception Expression: x1[2] ≈ pyconvert(Any, (px1[2]).numpy()) DimensionMismatch: a has size (3, 5), mismatch at dim 2 Stacktrace: [1] throw_promote_shape_mismatch(a::Tuple{Base.OneTo{Int64}, Base.OneTo{Int64}}, b::Nothing, i::Int64) @ Base ./indices.jl:135 [2] promote_shape @ ./indices.jl:199 [inlined] [3] promote_shape @ ./indices.jl:188 [inlined] [4] -(A::StridedView{Float32, 2, Vector{Float32}, typeof(identity)}, B::PyArray{Float32, 1, true, true, Float32}) @ Base ./arraymath.jl:7 [5] isapprox(x::StridedView{Float32, 2, Vector{Float32}, typeof(identity)}, y::PyArray{Float32, 1, true, true, Float32}; atol::Int64, rtol::Float32, nans::Bool, norm::typeof(LinearAlgebra.norm)) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:1962 [6] isapprox(x::StridedView{Float32, 2, Vector{Float32}, typeof(identity)}, y::PyArray{Float32, 1, true, true, Float32}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:1958 [7] eval_test_comparison(comparison::Expr, quoted::Expr, source::LineNumberNode, negate::Bool) @ Test /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:354 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:727 [inlined] [9] macro expansion @ ~/.julia/packages/Pickle/xJNoA/test/torch/torch_prebuild.jl:7 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [11] top-level scope @ ~/.julia/packages/Pickle/xJNoA/test/torch/torch_prebuild.jl:3 PREBUILD: Error During Test at /home/pkgeval/.julia/packages/Pickle/xJNoA/test/torch/torch_prebuild.jl:8 Test threw exception Expression: x2[2] ≈ pyconvert(Any, (px2[2]).numpy()) DimensionMismatch: a has size (3, 5), mismatch at dim 2 Stacktrace: [1] throw_promote_shape_mismatch(a::Tuple{Base.OneTo{Int64}, Base.OneTo{Int64}}, b::Nothing, i::Int64) @ Base ./indices.jl:135 [2] promote_shape @ ./indices.jl:199 [inlined] [3] promote_shape @ ./indices.jl:193 [inlined] [4] promote_shape @ ./indices.jl:188 [inlined] [5] -(A::Base.ReshapedArray{Float32, 1, Vector{Float32}, Tuple{}}, B::PyArray{Float32, 2, true, false, Float32}) @ Base ./arraymath.jl:7 [6] isapprox(x::Base.ReshapedArray{Float32, 1, Vector{Float32}, Tuple{}}, y::PyArray{Float32, 2, true, false, Float32}; atol::Int64, rtol::Float32, nans::Bool, norm::typeof(LinearAlgebra.norm)) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:1962 [7] isapprox(x::Base.ReshapedArray{Float32, 1, Vector{Float32}, Tuple{}}, y::PyArray{Float32, 2, true, false, Float32}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.13/LinearAlgebra/src/generic.jl:1958 [8] eval_test_comparison(comparison::Expr, quoted::Expr, source::LineNumberNode, negate::Bool) @ Test /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:354 [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:727 [inlined] [10] macro expansion @ ~/.julia/packages/Pickle/xJNoA/test/torch/torch_prebuild.jl:8 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [12] top-level scope @ ~/.julia/packages/Pickle/xJNoA/test/torch/torch_prebuild.jl:3 Test Summary: | Pass Error Total Time Pickle | 196 2 198 3m48.8s Doctests: Pickle | 1 1 1m11.9s LOAD | 15 15 15.9s STORE | 10 10 23.2s Numpy | 10 10 24.6s sparse | 4 4 4.4s Torch | 156 2 158 1m23.7s LOAD | 64 64 39.0s LOAD | 64 64 8.9s SAVE | 18 18 24.4s PREBUILD | 10 2 12 9.5s RNG of the outermost testset: Random.Xoshiro(0x4197af5ab6cb39fb, 0xa468c677fe3170c6, 0xf50cd55f0e85e6a9, 0x9c8fc84077490275, 0x4000a7613cfc1ecd) ERROR: LoadError: Some tests did not pass: 196 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/Pickle/xJNoA/test/runtests.jl:48 Testing failed after 416.19s ERROR: LoadError: Package Pickle errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2418 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2273 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:498 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:309 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:331 [12] _start() @ Base ./client.jl:564 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 513.8s: package tests unexpectedly errored