Package evaluation of PhyloClustering on Julia 1.13.0-DEV.582 (c0a1728d50*) started at 2025-05-14T22:22:56.036


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# Set-up
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Set-up completed after 0.27s


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# Installation
#

Installing PhyloClustering...
   Resolving package versions...
   Installed Formatting ────────────────── v0.4.3
   Installed Libuuid_jll ───────────────── v2.41.0+0
   Installed libass_jll ────────────────── v0.15.2+0
   Installed libaom_jll ────────────────── v3.11.0+0
   Installed ImageIO ───────────────────── v0.6.9
   Installed MosaicViews ───────────────── v0.3.4
   Installed MultivariateStats ─────────── v0.10.3
   Installed PolygonOps ────────────────── v0.1.2
   Installed MKL_jll ───────────────────── v2025.0.1+1
   Installed Bzip2_jll ─────────────────── v1.0.9+0
   Installed HarfBuzz_jll ──────────────── v8.5.0+0
   Installed Libtiff_jll ───────────────── v4.7.1+0
   Installed Extents ───────────────────── v0.1.5
   Installed InlineStrings ─────────────── v1.4.3
   Installed Cairo_jll ─────────────────── v1.18.4+0
   Installed Graphite2_jll ─────────────── v1.3.15+0
   Installed UnsafeArrays ──────────────── v1.0.8
   Installed OrderedCollections ────────── v1.8.0
   Installed Functors ──────────────────── v0.4.12
   Installed Optim ─────────────────────── v1.12.0
   Installed NearestNeighbors ──────────── v0.4.21
   Installed Giflib_jll ────────────────── v5.2.3+0
   Installed Fontconfig_jll ────────────── v2.16.0+0
   Installed SentinelArrays ────────────── v1.4.8
   Installed Distances ─────────────────── v0.10.12
   Installed QuadGK ────────────────────── v2.11.2
   Installed NaNMath ───────────────────── v1.1.3
   Installed FileIO ────────────────────── v1.17.0
   Installed Graphics ──────────────────── v1.1.3
   Installed OpenSpecFun_jll ───────────── v0.5.6+0
   Installed Opus_jll ──────────────────── v1.3.3+0
   Installed WoodburyMatrices ──────────── v1.0.0
   Installed AbstractLattices ──────────── v0.3.1
   Installed Ogg_jll ───────────────────── v1.3.5+1
   Installed Xorg_libxcb_jll ───────────── v1.17.1+0
   Installed Tables ────────────────────── v1.12.0
   Installed EnumX ─────────────────────── v1.0.5
   Installed Arpack ────────────────────── v0.5.4
   Installed NLSolversBase ─────────────── v7.9.1
   Installed Reexport ──────────────────── v1.2.2
   Installed LZO_jll ───────────────────── v2.10.3+0
   Installed LERC_jll ──────────────────── v4.0.1+0
   Installed Missings ──────────────────── v1.2.0
   Installed TableTraits ───────────────── v1.0.1
   Installed Preferences ───────────────── v1.4.3
   Installed Polynomials ───────────────── v4.0.19
   Installed LLVMOpenMP_jll ────────────── v18.1.8+0
   Installed SimplePolynomials ─────────── v0.2.18
   Installed LaTeXStrings ──────────────── v1.4.0
   Installed MappedArrays ──────────────── v0.4.2
   Installed Crayons ───────────────────── v4.1.1
   Installed SortingAlgorithms ─────────── v1.2.1
   Installed Grisu ─────────────────────── v1.0.2
   Installed RangeArrays ───────────────── v0.3.2
   Installed Format ────────────────────── v1.3.7
   Installed UnPack ────────────────────── v1.0.2
   Installed ADTypes ───────────────────── v1.14.0
   Installed CRlibm ────────────────────── v1.0.2
   Installed Imath_jll ─────────────────── v3.1.11+0
   Installed DiffResults ───────────────── v1.1.0
   Installed Inflate ───────────────────── v0.1.5
   Installed MacroTools ────────────────── v0.5.16
   Installed DataStructures ────────────── v0.18.22
   Installed Gettext_jll ───────────────── v0.21.0+0
   Installed FillArrays ────────────────── v1.13.0
   Installed ColorBrewer ───────────────── v0.4.1
   Installed MakieCore ─────────────────── v0.7.3
   Installed DelimitedFiles ────────────── v1.9.1
   Installed AbstractTrees ─────────────── v0.4.5
   Installed Packing ───────────────────── v0.5.1
   Installed OpenEXR_jll ───────────────── v3.2.4+0
   Installed MathTeXEngine ─────────────── v0.5.7
   Installed Cairo ─────────────────────── v1.1.1
   Installed oneTBB_jll ────────────────── v2022.0.0+0
   Installed LazyModules ───────────────── v0.3.1
   Installed ParallelKMeans ────────────── v1.1.0
   Installed UnicodeFun ────────────────── v0.4.1
   Installed Xorg_libXau_jll ───────────── v1.0.13+0
   Installed CodecZlib ─────────────────── v0.7.8
   Installed Observables ───────────────── v0.5.5
   Installed ArrayInterface ────────────── v7.19.0
   Installed StatsBase ─────────────────── v0.33.21
   Installed CairoMakie ────────────────── v0.11.9
   Installed IntelOpenMP_jll ───────────── v2025.0.4+0
   Installed DataValueInterfaces ───────── v1.0.0
   Installed CEnum ─────────────────────── v0.5.0
   Installed CommonSubexpressions ──────── v0.3.1
   Installed x264_jll ──────────────────── v10164.0.1+0
   Installed Expat_jll ─────────────────── v2.6.5+0
   Installed Pixman_jll ────────────────── v0.44.2+0
   Installed IrrationalConstants ───────── v0.2.4
   Installed Contour ───────────────────── v0.6.3
   Installed IntegerMathUtils ──────────── v0.1.2
   Installed libpng_jll ────────────────── v1.6.48+0
   Installed Libffi_jll ────────────────── v3.2.2+2
   Installed SimpleTraits ──────────────── v0.9.4
   Installed ColorVectorSpace ──────────── v0.10.0
   Installed Clustering ────────────────── v0.15.8
   Installed isoband_jll ───────────────── v0.2.3+0
   Installed ImageMetadata ─────────────── v0.9.10
   Installed RoundingEmulator ──────────── v0.2.1
   Installed StableRNGs ────────────────── v1.0.3
   Installed libfdk_aac_jll ────────────── v2.0.3+0
   Installed Interpolations ────────────── v0.15.1
   Installed FASTX ─────────────────────── v2.1.7
   Installed Scratch ───────────────────── v1.2.1
   Installed Setfield ──────────────────── v1.1.2
   Installed ShaderAbstractions ────────── v0.4.1
   Installed libsixel_jll ──────────────── v1.10.5+0
   Installed PooledArrays ──────────────── v1.4.3
   Installed PikaParser ────────────────── v0.6.1
   Installed libwebp_jll ───────────────── v1.5.0+0
   Installed FFMPEG_jll ────────────────── v7.1.0+0
   Installed PDMats ────────────────────── v0.11.35
   Installed CRlibm_jll ────────────────── v1.0.1+0
   Installed WorkerUtilities ───────────── v1.6.1
   Installed AxisArrays ────────────────── v0.4.7
   Installed WeakKeyIdDicts ────────────── v0.1.0
   Installed BioSequences ──────────────── v3.4.1
   Installed PNGFiles ──────────────────── v0.4.4
   Installed ImageCore ─────────────────── v0.10.5
   Installed DocStringExtensions ───────── v0.9.4
   Installed JpegTurbo ─────────────────── v0.1.6
   Installed ColorSchemes ──────────────── v3.29.0
   Installed ForwardDiff ───────────────── v1.0.1
   Installed StableHashTraits ──────────── v1.3.4
   Installed DifferentiationInterface ──── v0.6.54
   Installed LightXML ──────────────────── v0.9.1
   Installed Multisets ─────────────────── v0.4.5
   Installed FreeType ──────────────────── v4.1.1
   Installed PkgVersion ────────────────── v0.3.3
   Installed RelocatableFolders ────────── v1.0.1
   Installed Rmath_jll ─────────────────── v0.5.1+0
   Installed StringViews ───────────────── v1.3.4
   Installed KernelDensity ─────────────── v0.6.9
   Installed StatsModels ───────────────── v0.7.4
   Installed AliasTables ───────────────── v1.1.3
   Installed OpenBLASConsistentFPCSR_jll ─ v0.3.29+0
   Installed ShiftedArrays ─────────────── v2.0.0
   Installed Combinatorics ─────────────── v1.0.3
   Installed IteratorInterfaceExtensions ─ v1.0.0
   Installed RecipesBase ───────────────── v1.3.4
   Installed DataAPI ───────────────────── v1.16.0
   Installed StackViews ────────────────── v0.1.1
   Installed InvertedIndices ───────────── v1.3.1
   Installed Twiddle ───────────────────── v1.1.2
   Installed Colors ────────────────────── v0.12.11
   Installed SIMD ──────────────────────── v3.7.1
   Installed GaussianMixtures ──────────── v0.3.12
   Installed ImageAxes ─────────────────── v0.6.12
   Installed Netpbm ────────────────────── v1.1.1
   Installed StaticArrays ──────────────── v1.9.13
   Installed StaticArraysCore ──────────── v1.4.3
   Installed Libglvnd_jll ──────────────── v1.7.1+1
   Installed AbstractFFTs ──────────────── v1.5.0
   Installed AxisAlgorithms ────────────── v1.1.0
   Installed Requires ──────────────────── v1.3.1
   Installed StringManipulation ────────── v0.4.1
   Installed Mods ──────────────────────── v2.2.6
   Installed Glib_jll ──────────────────── v2.82.4+0
   Installed LogExpFunctions ───────────── v0.3.29
   Installed QOI ───────────────────────── v1.0.1
   Installed ColorTypes ────────────────── v0.11.5
   Installed DiffRules ─────────────────── v1.15.1
   Installed PrettyTables ──────────────── v2.4.0
   Installed JSON ──────────────────────── v0.21.4
   Installed Distributions ─────────────── v0.25.120
   Installed Parsers ───────────────────── v2.8.3
   Installed SimplePartitions ──────────── v0.3.3
   Installed FiniteDiff ────────────────── v2.27.0
   Installed Arpack_jll ────────────────── v3.5.1+1
   Installed FreeTypeAbstraction ───────── v0.10.6
   Installed BioGenerics ───────────────── v0.1.5
   Installed CSV ───────────────────────── v0.10.15
   Installed FilePaths ─────────────────── v0.8.3
   Installed GeoFormatTypes ────────────── v0.4.4
   Installed Rmath ─────────────────────── v0.8.0
   Installed StatsFuns ─────────────────── v1.5.0
   Installed PhyloClustering ───────────── v0.2.0
   Installed WeakRefStrings ────────────── v1.4.2
   Installed GridLayoutBase ────────────── v0.10.2
   Installed DataFrames ────────────────── v1.7.0
   Installed JLLWrappers ───────────────── v1.7.0
   Installed XZ_jll ────────────────────── v5.8.1+0
   Installed GeometryBasics ────────────── v0.4.11
   Installed Primes ────────────────────── v0.5.7
   Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0
   Installed OpenEXR ───────────────────── v0.3.3
   Installed SignedDistanceFields ──────── v0.4.0
   Installed Pango_jll ─────────────────── v1.56.1+0
   Installed NLopt ─────────────────────── v1.1.3
   Installed IterTools ─────────────────── v1.10.0
   Installed StatisticalTraits ─────────── v3.4.0
   Installed x265_jll ──────────────────── v4.1.0+0
   Installed ExactPredicates ───────────── v2.2.8
   Installed Xorg_xtrans_jll ───────────── v1.6.0+0
   Installed StructTypes ───────────────── v1.11.0
   Installed FilePathsBase ─────────────── v0.9.24
   Installed JpegTurbo_jll ─────────────── v3.1.1+0
   Installed GLM ───────────────────────── v1.9.0
   Installed Adapt ─────────────────────── v4.3.0
   Installed JLD2 ──────────────────────── v0.4.54
   Installed TiffImages ────────────────── v0.11.3
   Installed ConstructionBase ──────────── v1.5.8
   Installed HypergeometricFunctions ───── v0.3.28
   Installed Libmount_jll ──────────────── v2.41.0+0
   Installed TriplotBase ───────────────── v0.1.0
   Installed PaddedViews ───────────────── v0.5.12
   Installed TranscodingStreams ────────── v0.11.3
   Installed Compat ────────────────────── v4.16.0
   Installed Xorg_libX11_jll ───────────── v1.8.12+0
   Installed PlotUtils ─────────────────── v1.4.3
   Installed TensorCore ────────────────── v0.1.1
   Installed EarCut_jll ────────────────── v2.2.4+0
   Installed Statistics ────────────────── v1.11.1
   Installed Sixel ─────────────────────── v0.1.3
   Installed PositiveFactorizations ────── v0.2.4
   Installed StatsAPI ──────────────────── v1.7.0
   Installed PrecompileTools ───────────── v1.3.2
   Installed LinearAlgebraX ────────────── v0.2.10
   Installed RingLists ─────────────────── v0.2.9
   Installed StructArrays ──────────────── v0.6.21
   Installed ImageBase ─────────────────── v0.1.7
   Installed DelaunayTriangulation ─────── v0.8.12
   Installed ProgressMeter ─────────────── v1.10.4
   Installed OffsetArrays ──────────────── v1.17.0
   Installed BioSymbols ────────────────── v5.2.0
   Installed FriBidi_jll ───────────────── v1.0.17+0
   Installed Ratios ────────────────────── v0.4.5
   Installed TupleTools ────────────────── v1.6.0
   Installed ChainRulesCore ────────────── v1.25.1
   Installed LAME_jll ──────────────────── v3.100.2+0
   Installed WebP ──────────────────────── v0.1.3
   Installed Xorg_libXrender_jll ───────── v0.9.12+0
   Installed Parameters ────────────────── v0.12.3
   Installed libvorbis_jll ─────────────── v1.3.7+2
   Installed ScikitLearnBase ───────────── v0.5.0
   Installed PtrArrays ─────────────────── v1.3.0
   Installed Isoband ───────────────────── v0.1.1
   Installed XML2_jll ──────────────────── v2.13.6+1
   Installed IntervalArithmetic ────────── v0.22.34
   Installed Showoff ───────────────────── v1.0.3
   Installed ScientificTypesBase ───────── v3.0.0
   Installed FixedPointNumbers ─────────── v0.8.5
   Installed IntervalSets ──────────────── v0.7.11
   Installed SpecialFunctions ──────────── v2.5.1
   Installed FreeType2_jll ─────────────── v2.13.4+0
   Installed FFTW ──────────────────────── v1.8.1
   Installed FFTW_jll ──────────────────── v3.3.11+0
   Installed Libiconv_jll ──────────────── v1.18.0+0
   Installed Animations ────────────────── v0.4.2
   Installed Zstd_jll ──────────────────── v1.5.7+1
   Installed LineSearches ──────────────── v7.3.0
   Installed GeoInterface ──────────────── v1.4.1
   Installed IndirectArrays ────────────── v1.0.0
   Installed Permutations ──────────────── v0.4.23
   Installed MLJModelInterface ─────────── v1.11.1
   Installed Automa ────────────────────── v1.1.0
   Installed Xorg_libXext_jll ──────────── v1.3.7+0
   Installed SimpleRandom ──────────────── v0.3.2
   Installed NLopt_jll ─────────────────── v2.10.0+0
   Installed SimpleGraphs ──────────────── v0.8.6
   Installed Makie ─────────────────────── v0.20.8
   Installed PhyloNetworks ─────────────── v0.16.4
  Installing 58 artifacts
   Installed artifact oneTBB                  435.6 KiB
   Installed artifact Xorg_xtrans             48.2 KiB
   Installed artifact Xorg_libXext            699.9 KiB
   Installed artifact NLopt                   322.7 KiB
   Installed artifact libfdk_aac              2.8 MiB
   Installed artifact x264                    2.1 MiB
   Installed artifact libwebp                 2.6 MiB
   Installed artifact Imath                   182.8 KiB
   Installed artifact Libffi                  34.1 KiB
   Installed artifact CRlibm                  169.5 KiB
   Installed artifact Xorg_libXdmcp           67.7 KiB
   Installed artifact isoband                 25.7 KiB
   Installed artifact Bzip2                   503.5 KiB
   Installed artifact LLVMOpenMP              661.6 KiB
   Installed artifact Giflib                  154.6 KiB
   Installed artifact FFTW                    2.2 MiB
   Installed artifact libpng                  328.3 KiB
   Installed artifact Xorg_libxcb             2.1 MiB
   Installed artifact XZ                      1.5 MiB
   Installed artifact Xorg_libX11             13.9 MiB
   Installed artifact Graphite2               120.2 KiB
   Installed artifact OpenEXR                 1.9 MiB
   Installed artifact Libuuid                 3.5 MiB
   Installed artifact HarfBuzz                1.7 MiB
   Installed artifact libvorbis               271.0 KiB
   Installed artifact LERC                    272.9 KiB
   Installed artifact Libiconv                1.9 MiB
   Installed artifact Libglvnd                833.5 KiB
   Installed artifact Gettext                 4.5 MiB
   Installed artifact libass                  372.4 KiB
   Installed artifact Pango                   1.1 MiB
   Installed artifact EarCut                  80.5 KiB
   Installed artifact Pixman                  372.2 KiB
   Installed artifact Libtiff                 3.2 MiB
   Installed artifact Rmath                   121.9 KiB
   Installed artifact x265                    1.4 MiB
   Installed artifact Cairo                   2.2 MiB
   Installed artifact LAME                    292.5 KiB
   Installed artifact Expat                   271.4 KiB
   Installed artifact OpenSpecFun             194.9 KiB
   Installed artifact libaom                  6.4 MiB
   Installed artifact Ogg                     257.2 KiB
   Installed artifact Fontconfig              522.5 KiB
   Installed artifact Arpack                  147.2 KiB
   Installed artifact FriBidi                 78.9 KiB
   Installed artifact Libmount                6.4 MiB
   Installed artifact Glib                    7.6 MiB
   Installed artifact LZO                     208.9 KiB
   Installed artifact Opus                    908.1 KiB
   Installed artifact Zstd                    646.0 KiB
   Installed artifact libsixel                177.3 KiB
   Installed artifact Xorg_libXau             36.6 KiB
   Installed artifact FreeType2               1.5 MiB
   Installed artifact Xorg_libXrender         435.9 KiB
   Installed artifact OpenBLASConsistentFPCSR 9.9 MiB
   Installed artifact JpegTurbo               1.6 MiB
   Installed artifact XML2                    2.5 MiB
   Installed artifact FFMPEG                  11.4 MiB
    Updating `~/.julia/environments/v1.13/Project.toml`
  [2e4ec7c6] + PhyloClustering v0.2.0
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [47edcb42] + ADTypes v1.14.0
  [621f4979] + AbstractFFTs v1.5.0
  [398f06c4] + AbstractLattices v0.3.1
  [1520ce14] + AbstractTrees v0.4.5
  [79e6a3ab] + Adapt v4.3.0
  [66dad0bd] + AliasTables v1.1.3
  [27a7e980] + Animations v0.4.2
  [7d9fca2a] + Arpack v0.5.4
  [4fba245c] + ArrayInterface v7.19.0
  [67c07d97] + Automa v1.1.0
  [13072b0f] + AxisAlgorithms v1.1.0
  [39de3d68] + AxisArrays v0.4.7
  [47718e42] + BioGenerics v0.1.5
  [7e6ae17a] + BioSequences v3.4.1
  [3c28c6f8] + BioSymbols v5.2.0
  [fa961155] + CEnum v0.5.0
  [96374032] + CRlibm v1.0.2
  [336ed68f] + CSV v0.10.15
  [159f3aea] + Cairo v1.1.1
⌅ [13f3f980] + CairoMakie v0.11.9
  [d360d2e6] + ChainRulesCore v1.25.1
  [aaaa29a8] + Clustering v0.15.8
  [944b1d66] + CodecZlib v0.7.8
  [a2cac450] + ColorBrewer v0.4.1
  [35d6a980] + ColorSchemes v3.29.0
⌅ [3da002f7] + ColorTypes v0.11.5
⌃ [c3611d14] + ColorVectorSpace v0.10.0
⌅ [5ae59095] + Colors v0.12.11
  [861a8166] + Combinatorics v1.0.3
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.16.0
  [187b0558] + ConstructionBase v1.5.8
  [d38c429a] + Contour v0.6.3
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
⌅ [927a84f5] + DelaunayTriangulation v0.8.12
  [8bb1440f] + DelimitedFiles v1.9.1
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.120
  [ffbed154] + DocStringExtensions v0.9.4
  [4e289a0a] + EnumX v1.0.5
  [429591f6] + ExactPredicates v2.2.8
  [411431e0] + Extents v0.1.5
  [c2308a5c] + FASTX v2.1.7
  [7a1cc6ca] + FFTW v1.8.1
  [5789e2e9] + FileIO v1.17.0
⌅ [8fc22ac5] + FilePaths v0.8.3
  [48062228] + FilePathsBase v0.9.24
  [1a297f60] + FillArrays v1.13.0
  [6a86dc24] + FiniteDiff v2.27.0
  [53c48c17] + FixedPointNumbers v0.8.5
  [1fa38f19] + Format v1.3.7
  [59287772] + Formatting v0.4.3
  [f6369f11] + ForwardDiff v1.0.1
  [b38be410] + FreeType v4.1.1
  [663a7486] + FreeTypeAbstraction v0.10.6
⌅ [d9f16b24] + Functors v0.4.12
  [38e38edf] + GLM v1.9.0
  [cc18c42c] + GaussianMixtures v0.3.12
  [68eda718] + GeoFormatTypes v0.4.4
  [cf35fbd7] + GeoInterface v1.4.1
⌅ [5c1252a2] + GeometryBasics v0.4.11
  [a2bd30eb] + Graphics v1.1.3
⌅ [3955a311] + GridLayoutBase v0.10.2
  [42e2da0e] + Grisu v1.0.2
  [34004b35] + HypergeometricFunctions v0.3.28
  [2803e5a7] + ImageAxes v0.6.12
  [c817782e] + ImageBase v0.1.7
  [a09fc81d] + ImageCore v0.10.5
  [82e4d734] + ImageIO v0.6.9
  [bc367c6b] + ImageMetadata v0.9.10
  [9b13fd28] + IndirectArrays v1.0.0
  [d25df0c9] + Inflate v0.1.5
  [842dd82b] + InlineStrings v1.4.3
  [18e54dd8] + IntegerMathUtils v0.1.2
  [a98d9a8b] + Interpolations v0.15.1
  [d1acc4aa] + IntervalArithmetic v0.22.34
  [8197267c] + IntervalSets v0.7.11
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.4
  [f1662d9f] + Isoband v0.1.1
  [c8e1da08] + IterTools v1.10.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
⌅ [033835bb] + JLD2 v0.4.54
  [692b3bcd] + JLLWrappers v1.7.0
  [682c06a0] + JSON v0.21.4
  [b835a17e] + JpegTurbo v0.1.6
  [5ab0869b] + KernelDensity v0.6.9
  [b964fa9f] + LaTeXStrings v1.4.0
  [8cdb02fc] + LazyModules v0.3.1
  [9c8b4983] + LightXML v0.9.1
  [d3d80556] + LineSearches v7.3.0
  [9b3f67b0] + LinearAlgebraX v0.2.10
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e80e1ace] + MLJModelInterface v1.11.1
  [1914dd2f] + MacroTools v0.5.16
⌅ [ee78f7c6] + Makie v0.20.8
⌅ [20f20a25] + MakieCore v0.7.3
  [dbb5928d] + MappedArrays v0.4.2
⌅ [0a4f8689] + MathTeXEngine v0.5.7
  [e1d29d7a] + Missings v1.2.0
  [7475f97c] + Mods v2.2.6
  [e94cdb99] + MosaicViews v0.3.4
  [3b2b4ff1] + Multisets v0.4.5
  [6f286f6a] + MultivariateStats v0.10.3
  [d41bc354] + NLSolversBase v7.9.1
  [76087f3c] + NLopt v1.1.3
  [77ba4419] + NaNMath v1.1.3
  [b8a86587] + NearestNeighbors v0.4.21
  [f09324ee] + Netpbm v1.1.1
  [510215fc] + Observables v0.5.5
  [6fe1bfb0] + OffsetArrays v1.17.0
  [52e1d378] + OpenEXR v0.3.3
  [429524aa] + Optim v1.12.0
  [bac558e1] + OrderedCollections v1.8.0
  [90014a1f] + PDMats v0.11.35
  [f57f5aa1] + PNGFiles v0.4.4
  [19eb6ba3] + Packing v0.5.1
  [5432bcbf] + PaddedViews v0.5.12
  [42b8e9d4] + ParallelKMeans v1.1.0
  [d96e819e] + Parameters v0.12.3
  [69de0a69] + Parsers v2.8.3
  [2ae35dd2] + Permutations v0.4.23
  [2e4ec7c6] + PhyloClustering v0.2.0
⌅ [33ad39ac] + PhyloNetworks v0.16.4
  [3bbf5609] + PikaParser v0.6.1
  [eebad327] + PkgVersion v0.3.3
  [995b91a9] + PlotUtils v1.4.3
  [647866c9] + PolygonOps v0.1.2
  [f27b6e38] + Polynomials v4.0.19
  [2dfb63ee] + PooledArrays v1.4.3
  [85a6dd25] + PositiveFactorizations v0.2.4
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [08abe8d2] + PrettyTables v2.4.0
  [27ebfcd6] + Primes v0.5.7
  [92933f4c] + ProgressMeter v1.10.4
  [43287f4e] + PtrArrays v1.3.0
  [4b34888f] + QOI v1.0.1
  [1fd47b50] + QuadGK v2.11.2
  [b3c3ace0] + RangeArrays v0.3.2
  [c84ed2f1] + Ratios v0.4.5
  [3cdcf5f2] + RecipesBase v1.3.4
  [189a3867] + Reexport v1.2.2
  [05181044] + RelocatableFolders v1.0.1
  [ae029012] + Requires v1.3.1
  [286e9d63] + RingLists v0.2.9
  [79098fc4] + Rmath v0.8.0
  [5eaf0fd0] + RoundingEmulator v0.2.1
  [fdea26ae] + SIMD v3.7.1
  [30f210dd] + ScientificTypesBase v3.0.0
  [6e75b9c4] + ScikitLearnBase v0.5.0
  [6c6a2e73] + Scratch v1.2.1
  [91c51154] + SentinelArrays v1.4.8
  [efcf1570] + Setfield v1.1.2
⌅ [65257c39] + ShaderAbstractions v0.4.1
  [1277b4bf] + ShiftedArrays v2.0.0
  [992d4aef] + Showoff v1.0.3
  [73760f76] + SignedDistanceFields v0.4.0
  [55797a34] + SimpleGraphs v0.8.6
  [ec83eff0] + SimplePartitions v0.3.3
  [cc47b68c] + SimplePolynomials v0.2.18
  [a6525b86] + SimpleRandom v0.3.2
  [699a6c99] + SimpleTraits v0.9.4
  [45858cf5] + Sixel v0.1.3
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.1
⌅ [c5dd0088] + StableHashTraits v1.3.4
  [860ef19b] + StableRNGs v1.0.3
  [cae243ae] + StackViews v0.1.1
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [64bff920] + StatisticalTraits v3.4.0
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
⌅ [2913bbd2] + StatsBase v0.33.21
  [4c63d2b9] + StatsFuns v1.5.0
  [3eaba693] + StatsModels v0.7.4
  [892a3eda] + StringManipulation v0.4.1
  [354b36f9] + StringViews v1.3.4
⌅ [09ab397b] + StructArrays v0.6.21
  [856f2bd8] + StructTypes v1.11.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [62fd8b95] + TensorCore v0.1.1
  [731e570b] + TiffImages v0.11.3
  [3bb67fe8] + TranscodingStreams v0.11.3
  [981d1d27] + TriplotBase v0.1.0
  [9d95972d] + TupleTools v1.6.0
  [7200193e] + Twiddle v1.1.2
  [3a884ed6] + UnPack v1.0.2
  [1cfade01] + UnicodeFun v0.4.1
  [c4a57d5a] + UnsafeArrays v1.0.8
  [ecbed89c] + WeakKeyIdDicts v0.1.0
  [ea10d353] + WeakRefStrings v1.4.2
  [e3aaa7dc] + WebP v0.1.3
  [efce3f68] + WoodburyMatrices v1.0.0
  [76eceee3] + WorkerUtilities v1.6.1
⌅ [68821587] + Arpack_jll v3.5.1+1
  [6e34b625] + Bzip2_jll v1.0.9+0
  [4e9b3aee] + CRlibm_jll v1.0.1+0
⌃ [83423d85] + Cairo_jll v1.18.4+0
  [5ae413db] + EarCut_jll v2.2.4+0
  [2e619515] + Expat_jll v2.6.5+0
  [b22a6f82] + FFMPEG_jll v7.1.0+0
  [f5851436] + FFTW_jll v3.3.11+0
  [a3f928ae] + Fontconfig_jll v2.16.0+0
  [d7e528f0] + FreeType2_jll v2.13.4+0
  [559328eb] + FriBidi_jll v1.0.17+0
  [78b55507] + Gettext_jll v0.21.0+0
  [59f7168a] + Giflib_jll v5.2.3+0
⌃ [7746bdde] + Glib_jll v2.82.4+0
  [3b182d85] + Graphite2_jll v1.3.15+0
  [2e76f6c2] + HarfBuzz_jll v8.5.0+0
  [905a6f67] + Imath_jll v3.1.11+0
  [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0
  [aacddb02] + JpegTurbo_jll v3.1.1+0
  [c1c5ebd0] + LAME_jll v3.100.2+0
  [88015f11] + LERC_jll v4.0.1+0
  [1d63c593] + LLVMOpenMP_jll v18.1.8+0
  [dd4b983a] + LZO_jll v2.10.3+0
⌅ [e9f186c6] + Libffi_jll v3.2.2+2
  [7e76a0d4] + Libglvnd_jll v1.7.1+1
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [4b2f31a3] + Libmount_jll v2.41.0+0
  [89763e89] + Libtiff_jll v4.7.1+0
  [38a345b3] + Libuuid_jll v2.41.0+0
  [856f044c] + MKL_jll v2025.0.1+1
  [079eb43e] + NLopt_jll v2.10.0+0
  [e7412a2a] + Ogg_jll v1.3.5+1
  [6cdc7f73] + OpenBLASConsistentFPCSR_jll v0.3.29+0
  [18a262bb] + OpenEXR_jll v3.2.4+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [91d4177d] + Opus_jll v1.3.3+0
  [36c8627f] + Pango_jll v1.56.1+0
  [30392449] + Pixman_jll v0.44.2+0
  [f50d1b31] + Rmath_jll v0.5.1+0
⌅ [02c8fc9c] + XML2_jll v2.13.6+1
  [ffd25f8a] + XZ_jll v5.8.1+0
  [4f6342f7] + Xorg_libX11_jll v1.8.12+0
  [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0
  [a3789734] + Xorg_libXdmcp_jll v1.1.6+0
  [1082639a] + Xorg_libXext_jll v1.3.7+0
  [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0
  [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0
  [c5fb5394] + Xorg_xtrans_jll v1.6.0+0
  [3161d3a3] + Zstd_jll v1.5.7+1
  [9a68df92] + isoband_jll v0.2.3+0
  [a4ae2306] + libaom_jll v3.11.0+0
  [0ac62f75] + libass_jll v0.15.2+0
  [f638f0a6] + libfdk_aac_jll v2.0.3+0
  [b53b4c65] + libpng_jll v1.6.48+0
  [075b6546] + libsixel_jll v1.10.5+0
  [f27f6e37] + libvorbis_jll v1.3.7+2
  [c5f90fcd] + libwebp_jll v1.5.0+0
  [1317d2d5] + oneTBB_jll v2022.0.0+0
  [1270edf5] + x264_jll v10164.0.1+0
  [dfaa095f] + x265_jll v4.1.0+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [8bf52ea8] + CRC32c v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.13.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.12.1+1
  [e37daf67] + LibGit2_jll v1.9.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.2.25
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.5+0
  [458c3c95] + OpenSSL_jll v3.5.0+0
  [efcefdf7] + PCRE2_jll v10.44.0+1
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.12.0+0
  [8e850ede] + nghttp2_jll v1.65.0+0
  [3f19e933] + p7zip_jll v17.5.0+2
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 52.72s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
   1360.2 ms  ✓ StringViews
   1256.0 ms  ✓ Mods
    984.3 ms  ✓ MappedArrays
    730.3 ms  ✓ AbstractLattices
    936.4 ms  ✓ GeoFormatTypes
    796.1 ms  ✓ PolygonOps
   1106.4 ms  ✓ StableRNGs
   1205.7 ms  ✓ DocStringExtensions
    975.6 ms  ✓ WeakKeyIdDicts
    737.3 ms  ✓ DataValueInterfaces
   2419.1 ms  ✓ IrrationalConstants
   1039.6 ms  ✓ TensorCore
    890.1 ms  ✓ LaTeXStrings
    774.0 ms  ✓ UnPack
   1072.7 ms  ✓ Observables
   2080.1 ms  ✓ Combinatorics
   1063.3 ms  ✓ WorkerUtilities
   1281.1 ms  ✓ Requires
    917.0 ms  ✓ IntegerMathUtils
   1178.2 ms  ✓ ConstructionBase
    912.0 ms  ✓ TriplotBase
   1294.2 ms  ✓ Statistics
    996.8 ms  ✓ LazyModules
   1030.6 ms  ✓ Extents
   1678.5 ms  ✓ Functors
   1159.2 ms  ✓ AbstractTrees
    854.9 ms  ✓ RangeArrays
    867.8 ms  ✓ DataAPI
   1874.7 ms  ✓ InlineStrings
    820.1 ms  ✓ IndirectArrays
   2928.5 ms  ✓ Format
    883.8 ms  ✓ InvertedIndices
    980.7 ms  ✓ StatsAPI
   1565.6 ms  ✓ Grisu
    890.1 ms  ✓ Contour
   4606.5 ms  ✓ MacroTools
   1364.5 ms  ✓ OrderedCollections
    733.1 ms  ✓ IteratorInterfaceExtensions
   1456.1 ms  ✓ ADTypes
   1252.8 ms  ✓ RingLists
   1034.4 ms  ✓ TupleTools
   1983.0 ms  ✓ Crayons
    845.9 ms  ✓ CEnum
   1730.7 ms  ✓ OffsetArrays
    839.8 ms  ✓ EnumX
   2075.2 ms  ✓ FillArrays
    846.2 ms  ✓ ScientificTypesBase
   1131.1 ms  ✓ PositiveFactorizations
    816.2 ms  ✓ Twiddle
   1135.5 ms  ✓ DelimitedFiles
   1240.6 ms  ✓ Multisets
    889.8 ms  ✓ ShiftedArrays
   1298.5 ms  ✓ TranscodingStreams
    787.3 ms  ✓ PtrArrays
   1062.4 ms  ✓ IntervalSets
   1075.2 ms  ✓ Inflate
    918.9 ms  ✓ StaticArraysCore
    769.2 ms  ✓ Reexport
    991.1 ms  ✓ RoundingEmulator
   1223.4 ms  ✓ UnsafeArrays
   1184.2 ms  ✓ IterTools
   1381.8 ms  ✓ Formatting
   1226.7 ms  ✓ AbstractFFTs
   1356.2 ms  ✓ SuiteSparse
   1121.0 ms  ✓ NaNMath
   1485.2 ms  ✓ WoodburyMatrices
   1969.9 ms  ✓ ProgressMeter
   4081.5 ms  ✓ SentinelArrays
   1061.0 ms  ✓ Scratch
   1792.4 ms  ✓ StructTypes
   1315.8 ms  ✓ Preferences
   1322.5 ms  ✓ Compat
   3328.1 ms  ✓ UnicodeFun
   4735.7 ms  ✓ PkgVersion
   1659.8 ms  ✓ PikaParser
   1514.5 ms  ✓ LogExpFunctions
   3346.9 ms  ✓ MakieCore
   1269.6 ms  ✓ Permutations
    841.2 ms  ✓ Ratios
   1092.9 ms  ✓ Adapt
   9721.4 ms  ✓ FileIO
   1327.6 ms  ✓ Primes
    993.0 ms  ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt
    979.0 ms  ✓ SignedDistanceFields
   1429.1 ms  ✓ Statistics → SparseArraysExt
   4171.1 ms  ✓ FixedPointNumbers
   1117.2 ms  ✓ ScikitLearnBase
   1111.8 ms  ✓ Missings
   1215.8 ms  ✓ PooledArrays
   2247.3 ms  ✓ GeoInterface
   1601.6 ms  ✓ Distances
   1088.3 ms  ✓ Showoff
   1924.9 ms  ✓ CommonSubexpressions
   3938.2 ms  ✓ SimpleTraits
   1148.4 ms  ✓ Parameters
    957.8 ms  ✓ TableTraits
   2071.4 ms  ✓ DifferentiationInterface
    969.2 ms  ✓ ADTypes → ADTypesConstructionBaseExt
   1079.6 ms  ✓ PaddedViews
   1062.5 ms  ✓ StackViews
   1083.1 ms  ✓ FillArrays → FillArraysStatisticsExt
   1613.5 ms  ✓ FillArrays → FillArraysSparseArraysExt
   1053.6 ms  ✓ StatisticalTraits
   1186.2 ms  ✓ CodecZlib
   1120.5 ms  ✓ BioGenerics
   1136.9 ms  ✓ AliasTables
    977.2 ms  ✓ IntervalSets → IntervalSetsRandomExt
    976.0 ms  ✓ IntervalSets → IntervalSetsStatisticsExt
   1018.0 ms  ✓ ConstructionBase → ConstructionBaseIntervalSetsExt
   1092.1 ms  ✓ DiffResults
   4151.3 ms  ✓ AbstractFFTs → AbstractFFTsTestExt
   1958.1 ms  ✓ PDMats
   1513.6 ms  ✓ AxisAlgorithms
   1314.8 ms  ✓ RelocatableFolders
   1083.6 ms  ✓ PrecompileTools
   1272.4 ms  ✓ JLLWrappers
   1016.5 ms  ✓ Compat → CompatLinearAlgebraExt
   1392.1 ms  ✓ Adapt → AdaptSparseArraysExt
   1283.2 ms  ✓ ArrayInterface
   1045.2 ms  ✓ OffsetArrays → OffsetArraysAdaptExt
   3220.1 ms  ✓ Setfield
   4791.8 ms  ✓ ColorTypes
   1018.3 ms  ✓ Ratios → RatiosFixedPointNumbersExt
   1461.0 ms  ✓ Distances → DistancesSparseArraysExt
   1880.0 ms  ✓ Tables
   1443.5 ms  ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt
   1152.3 ms  ✓ MosaicViews
   3244.0 ms  ✓ MLJModelInterface
   1934.9 ms  ✓ AxisArrays
   1543.3 ms  ✓ FillArrays → FillArraysPDMatsExt
   2726.3 ms  ✓ BioSymbols
   3375.3 ms  ✓ StringManipulation
   3047.7 ms  ✓ RecipesBase
  17887.1 ms  ✓ SIMD
  13823.9 ms  ✓ StaticArrays
  18211.9 ms  ✓ Parsers
           ✗ JLD2
   1475.9 ms  ✓ Opus_jll
   1536.9 ms  ✓ XZ_jll
   1500.3 ms  ✓ libpng_jll
   1598.8 ms  ✓ Libuuid_jll
   1504.2 ms  ✓ Xorg_libXau_jll
   1465.3 ms  ✓ OpenSpecFun_jll
   1531.8 ms  ✓ Rmath_jll
   5378.4 ms  ✓ IntelOpenMP_jll
   1532.5 ms  ✓ FriBidi_jll
   1496.1 ms  ✓ LLVMOpenMP_jll
   1497.8 ms  ✓ Expat_jll
   1508.4 ms  ✓ LAME_jll
   1495.5 ms  ✓ Graphite2_jll
   1635.3 ms  ✓ Ogg_jll
   1343.5 ms  ✓ Xorg_xtrans_jll
   1531.6 ms  ✓ JpegTurbo_jll
   1537.0 ms  ✓ oneTBB_jll
   1519.1 ms  ✓ Zstd_jll
   1569.6 ms  ✓ Arpack_jll
   1724.4 ms  ✓ OpenBLASConsistentFPCSR_jll
   1598.0 ms  ✓ Giflib_jll
   1900.4 ms  ✓ NLopt_jll
   1485.8 ms  ✓ CRlibm_jll
   1537.8 ms  ✓ LERC_jll
   1497.5 ms  ✓ x264_jll
   1486.3 ms  ✓ Xorg_libXdmcp_jll
   1520.6 ms  ✓ LZO_jll
   1553.6 ms  ✓ Libiconv_jll
   1521.1 ms  ✓ EarCut_jll
   1510.4 ms  ✓ libaom_jll
   1664.8 ms  ✓ Libffi_jll
   2306.1 ms  ✓ isoband_jll
   1778.6 ms  ✓ FFTW_jll
   1608.8 ms  ✓ x265_jll
   1479.5 ms  ✓ Libmount_jll
   1519.6 ms  ✓ libfdk_aac_jll
   1512.2 ms  ✓ Bzip2_jll
   1543.5 ms  ✓ Imath_jll
   2930.5 ms  ✓ ChainRulesCore
   2644.3 ms  ✓ FilePathsBase
   4634.5 ms  ✓ DataStructures
   1413.6 ms  ✓ ArrayInterface → ArrayInterfaceSparseArraysExt
    952.4 ms  ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt
   7216.9 ms  ✓ Colors
   3837.7 ms  ✓ ColorVectorSpace
   5679.6 ms  ✓ QOI
   1891.2 ms  ✓ StructArrays
   6907.8 ms  ✓ StableHashTraits
  10176.5 ms  ✓ BioSequences
  31746.5 ms  ✓ PrettyTables
  36289.8 ms  ✓ Polynomials
   1569.1 ms  ✓ IntervalSets → IntervalSetsRecipesBaseExt
  22878.2 ms  ✓ Automa
   1600.3 ms  ✓ StaticArrays → StaticArraysStatisticsExt
   1634.3 ms  ✓ ConstructionBase → ConstructionBaseStaticArraysExt
   1565.2 ms  ✓ Adapt → AdaptStaticArraysExt
   1599.8 ms  ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt
   4392.0 ms  ✓ JSON
   1174.6 ms  ✓ InlineStrings → ParsersExt
   5704.5 ms  ✓ SpecialFunctions
   1927.0 ms  ✓ Rmath
   1526.8 ms  ✓ Pixman_jll
   1770.7 ms  ✓ libvorbis_jll
   1770.9 ms  ✓ libsixel_jll
   8122.5 ms  ✓ MKL_jll
   1660.2 ms  ✓ Arpack
           ✗ NLopt
   1489.3 ms  ✓ CRlibm
   1777.4 ms  ✓ Libtiff_jll
   1769.9 ms  ✓ Xorg_libxcb_jll
   1688.3 ms  ✓ XML2_jll
   1244.0 ms  ✓ Isoband
   1727.9 ms  ✓ FreeType2_jll
   1678.9 ms  ✓ OpenEXR_jll
   1434.0 ms  ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt
   1070.4 ms  ✓ ADTypes → ADTypesChainRulesCoreExt
   1088.2 ms  ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt
   3390.5 ms  ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt
   1055.5 ms  ✓ Distances → DistancesChainRulesCoreExt
   1050.7 ms  ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt
   1053.0 ms  ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt
   1614.2 ms  ✓ StaticArrays → StaticArraysChainRulesCoreExt
   1317.4 ms  ✓ FilePathsBase → FilePathsBaseMmapExt
   3382.3 ms  ✓ FilePathsBase → FilePathsBaseTestExt
   1848.5 ms  ✓ FilePaths
   3198.9 ms  ✓ QuadGK
   1976.1 ms  ✓ SortingAlgorithms
   2171.8 ms  ✓ SimplePartitions
 121081.9 ms  ✓ TiffImages
   1459.5 ms  ✓ FiniteDiff
   1411.9 ms  ✓ Animations
   1493.4 ms  ✓ Graphics
  32647.8 ms  ✓ ImageCore
   7462.9 ms  ✓ ColorSchemes
   1056.8 ms  ✓ StructArrays → StructArraysAdaptExt
   1068.9 ms  ✓ StructArrays → StructArraysLinearAlgebraExt
   1688.5 ms  ✓ StructArrays → StructArraysStaticArraysExt
   1514.6 ms  ✓ StructArrays → StructArraysSparseArraysExt
   3612.8 ms  ✓ Polynomials → PolynomialsChainRulesCoreExt
   5020.0 ms  ✓ Polynomials → PolynomialsMakieCoreExt
   4122.4 ms  ✓ SimplePolynomials
  23628.0 ms  ✓ FASTX
   4307.0 ms  ✓ NearestNeighbors
   3793.2 ms  ✓ ColorBrewer
   2648.2 ms  ✓ WeakRefStrings
   4642.5 ms  ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt
   2813.3 ms  ✓ HypergeometricFunctions
   1462.8 ms  ✓ DiffRules
   1750.1 ms  ✓ ColorVectorSpace → SpecialFunctionsExt
   7092.7 ms  ✓ FFTW
   6046.1 ms  ✓ IntervalArithmetic
   1798.8 ms  ✓ Xorg_libX11_jll
   1457.2 ms  ✓ LightXML
   1772.4 ms  ✓ Gettext_jll
   2421.5 ms  ✓ FreeType
   1962.0 ms  ✓ Fontconfig_jll
   6410.8 ms  ✓ OpenEXR
   4641.5 ms  ✓ Interpolations
   8845.6 ms  ✓ StatsBase
  86406.6 ms  ✓ DataFrames
   1587.0 ms  ✓ FiniteDiff → FiniteDiffStaticArraysExt
   1391.8 ms  ✓ FiniteDiff → FiniteDiffSparseArraysExt
   1155.2 ms  ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt
   4084.6 ms  ✓ ImageBase
   6541.2 ms  ✓ PNGFiles
   9555.5 ms  ✓ Sixel
  10043.8 ms  ✓ JpegTurbo
  17945.8 ms  ✓ PlotUtils
  11067.5 ms  ✓ GeometryBasics
   4085.0 ms  ✓ LinearAlgebraX
   2137.6 ms  ✓ FASTX → BioSequencesExt
  29884.3 ms  ✓ CSV
   3275.1 ms  ✓ StatsFuns
   9475.5 ms  ✓ ForwardDiff
   3922.1 ms  ✓ Polynomials → PolynomialsFFTWExt
   1814.2 ms  ✓ IntervalArithmetic → IntervalArithmeticSparseArraysExt
   1380.8 ms  ✓ IntervalArithmetic → IntervalArithmeticDiffRulesExt
   1356.5 ms  ✓ IntervalArithmetic → IntervalArithmeticIntervalSetsExt
   1790.5 ms  ✓ IntervalArithmetic → IntervalArithmeticRecipesBaseExt
   2002.3 ms  ✓ IntervalArithmetic → IntervalArithmeticLinearAlgebraExt
   1746.5 ms  ✓ Xorg_libXrender_jll
   1676.4 ms  ✓ Xorg_libXext_jll
   1770.1 ms  ✓ Glib_jll
   7644.2 ms  ✓ ParallelKMeans
   8884.9 ms  ✓ Clustering
   6500.6 ms  ✓ ImageAxes
  11985.7 ms  ✓ GridLayoutBase
   3114.1 ms  ✓ Packing
   3707.8 ms  ✓ ShaderAbstractions
   5135.5 ms  ✓ FreeTypeAbstraction
   3988.3 ms  ✓ StatsFuns → StatsFunsChainRulesCoreExt
   9119.6 ms  ✓ StatsModels
  14711.3 ms  ✓ Distributions
   4343.8 ms  ✓ ForwardDiff → ForwardDiffStaticArraysExt
   1862.3 ms  ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt
   1861.2 ms  ✓ IntervalArithmetic → IntervalArithmeticForwardDiffExt
   7397.5 ms  ✓ ExactPredicates
   1524.9 ms  ✓ Libglvnd_jll
   1679.6 ms  ✓ Cairo_jll
   4338.6 ms  ✓ ImageMetadata
  25750.7 ms  ✓ MathTeXEngine
   6427.0 ms  ✓ Distributions → DistributionsTestExt
   5756.0 ms  ✓ SimpleRandom
   5908.0 ms  ✓ Distributions → DistributionsChainRulesCoreExt
   9305.0 ms  ✓ GLM
   8859.2 ms  ✓ MultivariateStats
           ✗ GaussianMixtures
   4570.1 ms  ✓ NLSolversBase
   1855.4 ms  ✓ libwebp_jll
   1774.7 ms  ✓ HarfBuzz_jll
   7199.1 ms  ✓ Netpbm
   7045.6 ms  ✓ KernelDensity
           ✗ PhyloNetworks
   6777.7 ms  ✓ LineSearches
   8775.3 ms  ✓ WebP
   2351.5 ms  ✓ libass_jll
   2280.6 ms  ✓ Pango_jll
  11095.5 ms  ✓ Optim
   5364.0 ms  ✓ ImageIO
   1937.7 ms  ✓ FFMPEG_jll
   2865.1 ms  ✓ Cairo
   9573.6 ms  ✓ SimpleGraphs
  14004.7 ms  ✓ DelaunayTriangulation
 197593.7 ms  ✓ Makie
 156955.1 ms  ✓ CairoMakie
           ✗ PhyloClustering
  318 dependencies successfully precompiled in 1790 seconds. 40 already precompiled.
  3 dependencies had output during precompilation:
┌ Makie
│  ┌ Warning: `stable_hash(x; version < 4)` is not supported in Julia 1.11 or higher. Calls should not error, but *may* silently produce different hashes. `stable_hash` is intended to be used for caching, so this likely will simply reduce the number of cache hits. Upgrade to using `stable_hash(x; version=4) to avoid this warning.
│  └ @ StableHashTraits ~/.julia/packages/StableHashTraits/FV3wr/src/main_interface.jl:55
└  
┌ MKL_jll
│  Downloading artifact: IntelOpenMP
└  
┌ Formatting
│  ┌ Warning: DEPRECATION NOTICE
│  │ 
│  │ Formatting.jl has been unmaintained for a while, with some serious
│  │ correctness bugs compromising the original purpose of the package. As a result,
│  │ it has been deprecated - consider using an alternative, such as
│  │ `Format.jl` (https://github.com/JuliaString/Format.jl) or the `Printf` stdlib directly.
│  │ 
│  │ If you are not using Formatting.jl as a direct dependency, please consider
│  │ opening an issue on any packages you are using that do use it as a dependency.
│  │ From Julia 1.9 onwards, you can query `]why Formatting` to figure out which
│  │ package originally brings it in as a dependency.
│  └ @ Formatting ~/.julia/packages/Formatting/3VxOt/src/Formatting.jl:12
└  

ERROR: LoadError: The following 1 direct dependency failed to precompile:

PhyloClustering 

Failed to precompile PhyloClustering [2e4ec7c6-185f-4bfd-8419-ce336ea983f6] to "/home/pkgeval/.julia/compiled/v1.13/PhyloClustering/jl_3muq2s" (ProcessExited(1)).
ERROR: LoadError: syntax: misplaced "global" declaration
Stacktrace:
 [1] top-level scope
   @ ~/.julia/packages/NLopt/6hGun/src/NLopt.jl:850
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
   @ Base ./loading.jl:2983
 [4] top-level scope
   @ stdin:5
 [5] eval(m::Module, e::Any)
   @ Core ./boot.jl:489
 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
   @ Base ./loading.jl:2829
 [7] include_string
   @ ./loading.jl:2839 [inlined]
 [8] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:329
 [9] _start()
   @ Base ./client.jl:564
in expression starting at /home/pkgeval/.julia/packages/NLopt/6hGun/src/NLopt.jl:6
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile NLopt [76087f3c-5699-56af-9a33-bf431cd00edd] to "/home/pkgeval/.julia/compiled/v1.13/NLopt/jl_Skioki" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3270
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2652
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#232
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3841
 [11] maybe_cachefile_lock
    @ ./loading.jl:3838 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2638
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2466
 [14] macro expansion
    @ ./loading.jl:2394 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2359
 [17] require
    @ ./loading.jl:2335 [inlined]
 [18] eval_import_path
    @ ./module.jl:36 [inlined]
 [19] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [20] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [21] top-level scope
    @ ~/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:28
 [22] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2983
 [24] top-level scope
    @ stdin:5
 [25] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2829
 [27] include_string
    @ ./loading.jl:2839 [inlined]
 [28] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [29] _start()
    @ Base ./client.jl:564
in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:3
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile PhyloNetworks [33ad39ac-ed31-50eb-9b15-43d0656eaa72] to "/home/pkgeval/.julia/compiled/v1.13/PhyloNetworks/jl_Mq4hHb" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3270
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2652
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#232
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3841
 [11] maybe_cachefile_lock
    @ ./loading.jl:3838 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2638
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2466
 [14] macro expansion
    @ ./loading.jl:2394 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2359
 [17] require
    @ ./loading.jl:2335 [inlined]
 [18] eval_import_path
    @ ./module.jl:36 [inlined]
 [19] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [20] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [21] top-level scope
    @ ~/.julia/packages/PhyloClustering/7nfrG/src/bipartition.jl:1
 [22] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [23] top-level scope
    @ ~/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:4
 [24] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [25] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2983
 [26] top-level scope
    @ stdin:5
 [27] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2829
 [29] include_string
    @ ./loading.jl:2839 [inlined]
 [30] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [31] _start()
    @ Base ./client.jl:564
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/bipartition.jl:1
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3
in expression starting at stdin:
in expression starting at /PkgEval.jl/scripts/precompile.jl:37

Precompilation failed after 1788.26s



################################################################################
# Loading
#

Loading PhyloClustering...
Precompiling packages...
           ✗ JLD2
           ✗ NLopt
           ✗ GaussianMixtures
           ✗ PhyloNetworks
Info Given PhyloClustering was explicitly requested, output will be shown live 
ERROR: LoadError: syntax: misplaced "global" declaration
Stacktrace:
 [1] top-level scope
   @ ~/.julia/packages/NLopt/6hGun/src/NLopt.jl:850
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
   @ Base ./loading.jl:2983
 [4] top-level scope
   @ stdin:5
 [5] eval(m::Module, e::Any)
   @ Core ./boot.jl:489
 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
   @ Base ./loading.jl:2829
 [7] include_string
   @ ./loading.jl:2839 [inlined]
 [8] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:329
 [9] _start()
   @ Base ./client.jl:564
in expression starting at /home/pkgeval/.julia/packages/NLopt/6hGun/src/NLopt.jl:6
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile NLopt [76087f3c-5699-56af-9a33-bf431cd00edd] to "/home/pkgeval/.julia/compiled/v1.13/NLopt/jl_7bTOrU" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3270
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2652
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#232
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3841
 [11] maybe_cachefile_lock
    @ ./loading.jl:3838 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2638
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2466
 [14] macro expansion
    @ ./loading.jl:2394 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2359
 [17] require
    @ ./loading.jl:2335 [inlined]
 [18] eval_import_path
    @ ./module.jl:36 [inlined]
 [19] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [20] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [21] top-level scope
    @ ~/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:28
 [22] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2983
 [24] top-level scope
    @ stdin:5
 [25] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2829
 [27] include_string
    @ ./loading.jl:2839 [inlined]
 [28] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [29] _start()
    @ Base ./client.jl:564
in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:3
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile PhyloNetworks [33ad39ac-ed31-50eb-9b15-43d0656eaa72] to "/home/pkgeval/.julia/compiled/v1.13/PhyloNetworks/jl_pCNyGp" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3270
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2652
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#232
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3841
 [11] maybe_cachefile_lock
    @ ./loading.jl:3838 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2638
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2466
 [14] macro expansion
    @ ./loading.jl:2394 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2359
 [17] require
    @ ./loading.jl:2335 [inlined]
 [18] eval_import_path
    @ ./module.jl:36 [inlined]
 [19] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [20] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [21] top-level scope
    @ ~/.julia/packages/PhyloClustering/7nfrG/src/bipartition.jl:1
 [22] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [23] top-level scope
    @ ~/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:4
 [24] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [25] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2983
 [26] top-level scope
    @ stdin:5
 [27] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2829
 [29] include_string
    @ ./loading.jl:2839 [inlined]
 [30] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [31] _start()
    @ Base ./client.jl:564
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/bipartition.jl:1
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3
in expression starting at stdin:5
           ✗ PhyloClustering
  0 dependencies successfully precompiled in 170 seconds. 358 already precompiled.

ERROR: The following 1 direct dependency failed to precompile:

PhyloClustering 

Failed to precompile PhyloClustering [2e4ec7c6-185f-4bfd-8419-ce336ea983f6] to "/home/pkgeval/.julia/compiled/v1.13/PhyloClustering/jl_SbAcWq" (ProcessExited(1)).
ERROR: LoadError: syntax: misplaced "global" declaration
Stacktrace:
 [1] top-level scope
   @ ~/.julia/packages/NLopt/6hGun/src/NLopt.jl:850
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
   @ Base ./loading.jl:2983
 [4] top-level scope
   @ stdin:5
 [5] eval(m::Module, e::Any)
   @ Core ./boot.jl:489
 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
   @ Base ./loading.jl:2829
 [7] include_string
   @ ./loading.jl:2839 [inlined]
 [8] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:329
 [9] _start()
   @ Base ./client.jl:564
in expression starting at /home/pkgeval/.julia/packages/NLopt/6hGun/src/NLopt.jl:6
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile NLopt [76087f3c-5699-56af-9a33-bf431cd00edd] to "/home/pkgeval/.julia/compiled/v1.13/NLopt/jl_7bTOrU" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3270
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2652
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#232
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3841
 [11] maybe_cachefile_lock
    @ ./loading.jl:3838 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2638
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2466
 [14] macro expansion
    @ ./loading.jl:2394 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2359
 [17] require
    @ ./loading.jl:2335 [inlined]
 [18] eval_import_path
    @ ./module.jl:36 [inlined]
 [19] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [20] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [21] top-level scope
    @ ~/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:28
 [22] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2983
 [24] top-level scope
    @ stdin:5
 [25] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2829
 [27] include_string
    @ ./loading.jl:2839 [inlined]
 [28] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [29] _start()
    @ Base ./client.jl:564
in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:3
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile PhyloNetworks [33ad39ac-ed31-50eb-9b15-43d0656eaa72] to "/home/pkgeval/.julia/compiled/v1.13/PhyloNetworks/jl_pCNyGp" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3270
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2652
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#232
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3841
 [11] maybe_cachefile_lock
    @ ./loading.jl:3838 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2638
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2466
 [14] macro expansion
    @ ./loading.jl:2394 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2359
 [17] require
    @ ./loading.jl:2335 [inlined]
 [18] eval_import_path
    @ ./module.jl:36 [inlined]
 [19] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [20] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [21] top-level scope
    @ ~/.julia/packages/PhyloClustering/7nfrG/src/bipartition.jl:1
 [22] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [23] top-level scope
    @ ~/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:4
 [24] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [25] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2983
 [26] top-level scope
    @ stdin:5
 [27] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2829
 [29] include_string
    @ ./loading.jl:2839 [inlined]
 [30] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [31] _start()
    @ Base ./client.jl:564
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/bipartition.jl:1
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3
in expression starting at stdin:

Loading failed after 171.73s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using PhyloClustering'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:602 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:517
 [3] run(::Cmd)
   @ Base ./process.jl:514
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:193
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:331
 [7] _start()
   @ Base ./client.jl:564
in expression starting at /PkgEval.jl/scripts/evaluate.jl:184

PkgEval failed after 2057.32s: package has syntax issues