Package evaluation of Pfam on Julia 1.13.0-DEV.582 (c0a1728d50*) started at 2025-05-14T11:06:59.163


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# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.07s


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# Installation
#

Installing Pfam...
   Resolving package versions...
    Updating `~/.julia/environments/v1.13/Project.toml`
  [275cd14a] + Pfam v2.0.1
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [692b3bcd] + JLLWrappers v1.7.0
  [275cd14a] + Pfam v2.0.1
  [21216c6a] + Preferences v1.4.3
  [92933f4c] + ProgressMeter v1.10.4
  [be1be57a] + Gzip_jll v1.14.0+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [8f399da3] + Libdl v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [fa267f1f] + TOML v1.0.3
  [4ec0a83e] + Unicode v1.11.0
  [deac9b47] + LibCURL_jll v8.12.1+1
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.2.25
  [458c3c95] + OpenSSL_jll v3.5.0+0
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850ede] + nghttp2_jll v1.65.0+0

Installation completed after 3.02s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 19.25s


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# Testing
#

     Testing Pfam
      Status `/tmp/jl_cMhIHT/Project.toml`
⌅ [4c88cf16] Aqua v0.7.4
  [275cd14a] Pfam v2.0.1
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_cMhIHT/Manifest.toml`
⌅ [4c88cf16] Aqua v0.7.4
  [34da2185] Compat v4.16.0
  [692b3bcd] JLLWrappers v1.7.0
  [275cd14a] Pfam v2.0.1
  [21216c6a] Preferences v1.4.3
  [92933f4c] ProgressMeter v1.10.4
  [be1be57a] Gzip_jll v1.14.0+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.13.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [deac9b47] LibCURL_jll v8.12.1+1
  [e37daf67] LibGit2_jll v1.9.0+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.2.25
  [458c3c95] OpenSSL_jll v3.5.0+0
  [83775a58] Zlib_jll v1.3.1+2
  [8e850ede] nghttp2_jll v1.65.0+0
  [3f19e933] p7zip_jll v17.5.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
Skipping Base.active_repl
Skipping Base.MainInclude.Distributed
Skipping Base.MainInclude.InteractiveUtils
┌ Warning: `isbindingresolved(m::Module, var::Symbol)` is deprecated, use `true` instead.
│   caller = walkmodules(f::Aqua.var"#undefined_exports##0#undefined_exports##1"{Vector{Symbol}}, x::Module) at exports.jl:5
└ @ Core ~/.julia/packages/Aqua/rmHe1/src/exports.jl:5
Test Summary:                                | Pass  Total   Time
aqua                                         |    9      9  42.4s
  Method ambiguity                           |    1      1   8.5s
  Unbound type parameters                    |    1      1   0.1s
  Undefined exports                          |    1      1  10.9s
  Compare Project.toml and test/Project.toml |    1      1   0.5s
  Stale dependencies                         |    1      1   5.4s
  Compat bounds                              |    1      1   2.8s
  Project.toml formatting                    |    2      2   0.8s
  Piracy                                     |    1      1   0.3s
[ Info: PFAM directory /tmp/jl_kswGBg set.
[ Info: Pfam version 35.0 set.
[ Info: Downloading to /tmp/jl_kswGBg/35.0/pdbmap ...

Downloaded (bytes): 0    Time: 0:00:03
Downloaded (bytes): 7750    Time: 0:00:03
Downloaded (bytes): 143750    Time: 0:00:04
Downloaded (bytes): 663750    Time: 0:00:04
Downloaded (bytes): 2463750    Time: 0:00:04[ Info: Downloading to /tmp/jl_kswGBg/alignment_files/PF00013.alignment.full.stk ...

Downloaded (bytes): 0    Time: 0:00:00
Downloaded (bytes): 0    Time: 0:00:00
Downloaded (bytes): 0    Time: 0:00:00
Downloaded (bytes): 0    Time: 0:00:01
Downloaded (bytes): 0    Time: 0:00:02
Downloaded (bytes): 0    Time: 0:00:03
Downloaded (bytes): 3684    Time: 0:00:03
Downloaded (bytes): 29912    Time: 0:00:03
Downloaded (bytes): 109424    Time: 0:00:03
Downloaded (bytes): 186644    Time: 0:00:04
Downloaded (bytes): 416370    Time: 0:00:04
Downloaded (bytes): 974276    Time: 0:00:04
Downloaded (bytes): 2319814    Time: 0:00:04
Downloaded (bytes): 5421115    Time: 0:00:04
Downloaded (bytes): 8506007    Time: 0:00:04
Downloaded (bytes): 11804216    Time: 0:00:04     Testing Pfam tests passed 

Testing completed after 61.69s

PkgEval succeeded after 108.18s