Package evaluation of OnlinePCA on Julia 1.13.0-DEV.582 (c0a1728d50*) started at 2025-05-14T15:32:44.347


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.49s


################################################################################
# Installation
#

Installing OnlinePCA...
   Resolving package versions...
    Updating `~/.julia/environments/v1.13/Project.toml`
  [975b03d1] + OnlinePCA v0.3.9
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [c7e460c6] + ArgParse v1.2.0
  [944b1d66] + CodecZlib v0.7.8
  [6b39b394] + CodecZstd v0.8.6
  [34da2185] + Compat v4.16.0
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [8bb1440f] + DelimitedFiles v1.9.1
  [31c24e10] + Distributions v0.25.120
  [ffbed154] + DocStringExtensions v0.9.4
  [1a297f60] + FillArrays v1.13.0
  [38e38edf] + GLM v1.9.0
  [f67ccb44] + HDF5 v0.17.2
  [34004b35] + HypergeometricFunctions v0.3.28
  [842dd82b] + InlineStrings v1.4.3
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.0
  [b964fa9f] + LaTeXStrings v1.4.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [3da0fdf6] + MPIPreferences v0.1.11
  [4d4711f2] + MatrixMarket v0.5.2
  [e1d29d7a] + Missings v1.2.0
  [975b03d1] + OnlinePCA v0.3.9
  [bac558e1] + OrderedCollections v1.8.0
  [90014a1f] + PDMats v0.11.35
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [08abe8d2] + PrettyTables v2.4.0
  [92933f4c] + ProgressMeter v1.10.4
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.8.0
  [91c51154] + SentinelArrays v1.4.8
  [1277b4bf] + ShiftedArrays v2.0.0
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.1
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.5
  [4c63d2b9] + StatsFuns v1.5.0
  [3eaba693] + StatsModels v0.7.4
  [892a3eda] + StringManipulation v0.4.1
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [b718987f] + TextWrap v1.0.2
  [3bb67fe8] + TranscodingStreams v0.11.3
  [0234f1f7] + HDF5_jll v1.14.6+0
  [e33a78d0] + Hwloc_jll v2.12.0+0
  [7cb0a576] + MPICH_jll v4.3.0+1
  [f1f71cc9] + MPItrampoline_jll v5.5.3+0
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] + OpenMPI_jll v5.0.7+2
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [3161d3a3] + Zstd_jll v1.5.7+1
  [477f73a3] + libaec_jll v1.1.3+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.13.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.12.1+1
  [e37daf67] + LibGit2_jll v1.9.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.2.25
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.5+0
  [458c3c95] + OpenSSL_jll v3.5.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.12.0+0
  [8e850ede] + nghttp2_jll v1.65.0+0
  [3f19e933] + p7zip_jll v17.5.0+2

Installation completed after 8.57s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 112.12s


################################################################################
# Testing
#

     Testing OnlinePCA
        Test Could not use exact versions of packages in manifest. Re-resolving dependencies
    Updating `/tmp/jl_U6DgmF/Project.toml`
  [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.120
  [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.13.0
  [975b03d1] + OnlinePCA v0.3.9
  [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1
  [37e2e46d] ~ LinearAlgebra ⇒ v1.12.0
  [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.12.0
  [8dfed614] ~ Test ⇒ v1.11.0
    Updating `/tmp/jl_U6DgmF/Manifest.toml`
  [944b1d66] ↑ CodecZlib v0.7.6 ⇒ v0.7.8
  [6b39b394] + CodecZstd v0.8.6
  [a8cc5b0e] + Crayons v4.1.1
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] ↑ DataStructures v0.18.20 ⇒ v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.120
  [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.4
  [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.13.0
  [38e38edf] + GLM v1.9.0
  [f67ccb44] + HDF5 v0.17.2
  [34004b35] ↑ HypergeometricFunctions v0.3.24 ⇒ v0.3.28
  [842dd82b] + InlineStrings v1.4.3
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] ↑ JLLWrappers v1.5.0 ⇒ v1.7.0
  [b964fa9f] + LaTeXStrings v1.4.0
  [2ab3a3ac] ↑ LogExpFunctions v0.3.28 ⇒ v0.3.29
  [3da0fdf6] + MPIPreferences v0.1.11
  [975b03d1] + OnlinePCA v0.3.9
  [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.0
  [90014a1f] ↑ PDMats v0.11.31 ⇒ v0.11.35
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.2
  [08abe8d2] + PrettyTables v2.4.0
  [92933f4c] + ProgressMeter v1.10.4
  [43287f4e] ↑ PtrArrays v1.2.0 ⇒ v1.3.0
  [1fd47b50] ↑ QuadGK v2.10.1 ⇒ v2.11.2
  [ae029012] + Requires v1.3.1
  [79098fc4] ↑ Rmath v0.7.1 ⇒ v0.8.0
  [91c51154] + SentinelArrays v1.4.8
  [1277b4bf] + ShiftedArrays v2.0.0
  [276daf66] ↑ SpecialFunctions v2.4.0 ⇒ v2.5.1
  [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1
  [2913bbd2] ↑ StatsBase v0.34.3 ⇒ v0.34.5
  [4c63d2b9] ↑ StatsFuns v1.3.1 ⇒ v1.5.0
  [3eaba693] + StatsModels v0.7.4
  [892a3eda] + StringManipulation v0.4.1
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [3bb67fe8] ↑ TranscodingStreams v0.11.2 ⇒ v0.11.3
  [0234f1f7] + HDF5_jll v1.14.6+0
  [e33a78d0] + Hwloc_jll v2.12.0+0
  [7cb0a576] + MPICH_jll v4.3.0+1
  [f1f71cc9] + MPItrampoline_jll v5.5.3+0
  [c8ffd9c3] - MbedTLS_jll v2.28.2+1
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] + OpenMPI_jll v5.0.7+2
  [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0
  [f50d1b31] ↑ Rmath_jll v0.4.3+0 ⇒ v0.5.1+0
  [3161d3a3] + Zstd_jll v1.5.7+1
  [477f73a3] + libaec_jll v1.1.3+0
  [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2
  [56f22d72] ~ Artifacts ⇒ v1.11.0
  [2a0f44e3] ~ Base64 ⇒ v1.11.0
  [ade2ca70] ~ Dates ⇒ v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0
  [7b1f6079] ~ FileWatching ⇒ v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [76f85450] ~ LibGit2 ⇒ v1.11.0
  [8f399da3] ~ Libdl ⇒ v1.11.0
  [37e2e46d] ~ LinearAlgebra ⇒ v1.12.0
  [56ddb016] ~ Logging ⇒ v1.11.0
  [d6f4376e] ~ Markdown ⇒ v1.11.0
  [a63ad114] ~ Mmap ⇒ v1.11.0
  [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0
  [44cfe95a] ↑ Pkg v1.10.0 ⇒ v1.13.0
  [de0858da] ~ Printf ⇒ v1.11.0
  [3fa0cd96] ~ REPL ⇒ v1.11.0
  [9a3f8284] ~ Random ⇒ v1.11.0
  [9e88b42a] ~ Serialization ⇒ v1.11.0
  [6462fe0b] ~ Sockets ⇒ v1.11.0
  [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [8dfed614] ~ Test ⇒ v1.11.0
  [cf7118a7] ~ UUIDs ⇒ v1.11.0
  [4ec0a83e] ~ Unicode ⇒ v1.11.0
  [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.1+0 ⇒ v1.3.0+1
  [deac9b47] ↑ LibCURL_jll v8.4.0+0 ⇒ v8.12.1+1
  [e37daf67] ↑ LibGit2_jll v1.6.4+0 ⇒ v1.9.0+0
  [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.3+1
  [14a3606d] ↑ MozillaCACerts_jll v2023.1.10 ⇒ v2025.2.25
  [4536629a] ↑ OpenBLAS_jll v0.3.23+4 ⇒ v0.3.29+0
  [05823500] ↑ OpenLibm_jll v0.8.1+2 ⇒ v0.8.5+0
  [458c3c95] + OpenSSL_jll v3.5.0+0
  [bea87d4a] ↑ SuiteSparse_jll v7.2.1+1 ⇒ v7.10.1+0
  [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.1+2
  [8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.12.0+0
  [8e850ede] ↑ nghttp2_jll v1.52.0+1 ⇒ v1.65.0+0
  [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.5.0+2
        Test Successfully re-resolved
      Status `/tmp/jl_U6DgmF/Project.toml`
  [c7e460c6] ArgParse v1.2.0
  [8bb1440f] DelimitedFiles v1.9.1
  [31c24e10] Distributions v0.25.120
  [1a297f60] FillArrays v1.13.0
  [4d4711f2] MatrixMarket v0.5.2
  [975b03d1] OnlinePCA v0.3.9
  [10745b16] Statistics v1.11.1
  [37e2e46d] LinearAlgebra v1.12.0
  [2f01184e] SparseArrays v1.12.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_U6DgmF/Manifest.toml`
  [66dad0bd] AliasTables v1.1.3
  [c7e460c6] ArgParse v1.2.0
  [944b1d66] CodecZlib v0.7.8
  [6b39b394] CodecZstd v0.8.6
  [34da2185] Compat v4.16.0
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.7.0
  [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [8bb1440f] DelimitedFiles v1.9.1
  [31c24e10] Distributions v0.25.120
  [ffbed154] DocStringExtensions v0.9.4
  [1a297f60] FillArrays v1.13.0
  [38e38edf] GLM v1.9.0
  [f67ccb44] HDF5 v0.17.2
  [34004b35] HypergeometricFunctions v0.3.28
  [842dd82b] InlineStrings v1.4.3
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.4
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.0
  [b964fa9f] LaTeXStrings v1.4.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [3da0fdf6] MPIPreferences v0.1.11
  [4d4711f2] MatrixMarket v0.5.2
  [e1d29d7a] Missings v1.2.0
  [975b03d1] OnlinePCA v0.3.9
  [bac558e1] OrderedCollections v1.8.0
  [90014a1f] PDMats v0.11.35
  [2dfb63ee] PooledArrays v1.4.3
  [aea7be01] PrecompileTools v1.3.2
  [21216c6a] Preferences v1.4.3
  [08abe8d2] PrettyTables v2.4.0
  [92933f4c] ProgressMeter v1.10.4
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [79098fc4] Rmath v0.8.0
  [91c51154] SentinelArrays v1.4.8
  [1277b4bf] ShiftedArrays v2.0.0
  [a2af1166] SortingAlgorithms v1.2.1
  [276daf66] SpecialFunctions v2.5.1
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
  [2913bbd2] StatsBase v0.34.5
  [4c63d2b9] StatsFuns v1.5.0
  [3eaba693] StatsModels v0.7.4
  [892a3eda] StringManipulation v0.4.1
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.0
  [b718987f] TextWrap v1.0.2
  [3bb67fe8] TranscodingStreams v0.11.3
  [0234f1f7] HDF5_jll v1.14.6+0
  [e33a78d0] Hwloc_jll v2.12.0+0
  [7cb0a576] MPICH_jll v4.3.0+1
  [f1f71cc9] MPItrampoline_jll v5.5.3+0
  [9237b28f] MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] OpenMPI_jll v5.0.7+2
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [3161d3a3] Zstd_jll v1.5.7+1
  [477f73a3] libaec_jll v1.1.3+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.13.0
  [de0858da] Printf v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.12.1+1
  [e37daf67] LibGit2_jll v1.9.0+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.2.25
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.5+0
  [458c3c95] OpenSSL_jll v3.5.0+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.1+2
  [8e850b90] libblastrampoline_jll v5.12.0+0
  [8e850ede] nghttp2_jll v1.65.0+0
  [3f19e933] p7zip_jll v17.5.0+2
     Testing Running tests...
Precompiling packages...
   8592.5 ms  ✓ Distributions → DistributionsTestExt
  1 dependency successfully precompiled in 9 seconds. 49 already precompiled.
Precompiling packages...
   1487.1 ms  ✓ MatrixMarket
  1 dependency successfully precompiled in 2 seconds. 6 already precompiled.
/tmp/jl_pL8C8s
Running all tests...
####### Binarization of CSV (Julia API) #######

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####### Binarization of CSV (Command line) #######
Precompiling packages...
   1315.6 ms  ✓ ShiftedArrays
   1043.5 ms  ✓ TextWrap
    961.7 ms  ✓ PtrArrays
   1461.3 ms  ✓ OrderedCollections
   1262.7 ms  ✓ IteratorInterfaceExtensions
   4626.2 ms  ✓ Crayons
    937.3 ms  ✓ Reexport
   1347.2 ms  ✓ DocStringExtensions
   2201.6 ms  ✓ FillArrays
    902.2 ms  ✓ DataValueInterfaces
   1030.2 ms  ✓ DataAPI
   4348.6 ms  ✓ IrrationalConstants
   1826.9 ms  ✓ InlineStrings
   1025.1 ms  ✓ LaTeXStrings
   1468.5 ms  ✓ SuiteSparse
   1039.4 ms  ✓ InvertedIndices
   1052.6 ms  ✓ StatsAPI
   1294.3 ms  ✓ DelimitedFiles
   2310.2 ms  ✓ Requires
   1593.4 ms  ✓ MatrixMarket
   2147.3 ms  ✓ ProgressMeter
   6820.5 ms  ✓ SentinelArrays
   1460.9 ms  ✓ Compat
   1738.2 ms  ✓ Rmath_jll
   6825.7 ms  ✓ StringManipulation
   2874.9 ms  ✓ CodecZstd
   3260.5 ms  ✓ ArgParse
   2285.5 ms  ✓ AliasTables
   1994.4 ms  ✓ TableTraits
   1701.3 ms  ✓ FillArrays → FillArraysSparseArraysExt
   1136.0 ms  ✓ FillArrays → FillArraysStatisticsExt
   1283.1 ms  ✓ PooledArrays
   1238.2 ms  ✓ Missings
   1562.4 ms  ✓ LogExpFunctions
   3431.0 ms  ✓ PDMats
   1892.4 ms  ✓ Compat → CompatLinearAlgebraExt
   2157.3 ms  ✓ Rmath
   2002.4 ms  ✓ Tables
   6761.2 ms  ✓ SpecialFunctions
   1636.7 ms  ✓ FillArrays → FillArraysPDMatsExt
   4854.2 ms  ✓ DataStructures
  26672.6 ms  ✓ HDF5
  77566.5 ms  ✓ PrettyTables
   3660.5 ms  ✓ HypergeometricFunctions
   3725.5 ms  ✓ QuadGK
   2106.3 ms  ✓ SortingAlgorithms
   4866.0 ms  ✓ StatsFuns
   6557.0 ms  ✓ StatsBase
 217843.5 ms  ✓ DataFrames
   7206.0 ms  ✓ StatsModels
  13297.5 ms  ✓ Distributions
   4799.6 ms  ✓ Distributions → DistributionsTestExt
   6498.1 ms  ✓ GLM
  20387.2 ms  ✓ OnlinePCA
  54 dependencies successfully precompiled in 489 seconds. 54 already precompiled.
Parsed args:
  csvfile  =>  /tmp/jl_pL8C8s/Data.csv
  binfile  =>  /tmp/jl_pL8C8s/Data.zst

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####### Binarization of MM (Julia API) #######
####### Binarization of MM (Command line) #######
Parsed args:
  binfile  =>  /tmp/jl_pL8C8s/Data.mtx.zst
  mmfile  =>  /tmp/jl_pL8C8s/Data.mtx
####### Binarization of Binary COO (Julia API) #######
####### Binarization of Binary COO (Command line) #######
Parsed args:
  binfile  =>  /tmp/jl_pL8C8s/Data.bincoo.zst
  bincoofile  =>  /tmp/jl_pL8C8s/Data.bincoo
####### Summarization (Julia API) #######
1 / 2 : Column-wise statistics are calculated...
2 / 2 : Row-wise statistics are calculated...
####### Summarization (Command line) #######
Parsed args:
  outdir  =>  /tmp/jl_5HVCR5
  binfile  =>  /tmp/jl_pL8C8s/Data.zst
  pseudocount  =>  1.0
  mode  =>  dense
1 / 2 : Column-wise statistics are calculated...
2 / 2 : Row-wise statistics are calculated...
####### Summarization (Julia API) #######
1 / 2 : Column-wise statistics are calculated...
2 / 2 : Row-wise statistics are calculated...
####### Summarization (Command line) #######
Parsed args:
  outdir  =>  /tmp/jl_8axsT0
  binfile  =>  /tmp/jl_pL8C8s/Data.mtx.zst
  pseudocount  =>  1.0
  mode  =>  sparse_mm
1 / 2 : Column-wise statistics are calculated...
2 / 2 : Row-wise statistics are calculated...
####### HVG (Julia API) #######
Highly Variable Genes are calculated...
####### HVG (Command line) #######
Parsed args:
  rowcv2list  =>  /tmp/jl_5HVCR5/Feature_CV2s.csv
  outdir  =>  /tmp/jl_5HVCR5
  binfile  =>  /tmp/jl_pL8C8s/Data.zst
  rowvarlist  =>  /tmp/jl_5HVCR5/Feature_Vars.csv
  rowmeanlist  =>  /tmp/jl_5HVCR5/Feature_Means.csv
Highly Variable Genes are calculated...
####### Filtering (Julia API) #######



####### Filtering (Command line) #######
Parsed args:
  input  =>  /tmp/jl_pL8C8s/Data.zst
  direct1  =>  +
  outdir  =>  /tmp/jl_5HVCR5
  direct2  =>  +
  thr2  =>  10
  samplelist  =>  /tmp/jl_5HVCR5/Sample_NoCounts.csv
  featurelist  =>  /tmp/jl_5HVCR5/Feature_Means.csv
  thr1  =>  10

Parsed args:
  input  =>  /tmp/jl_pL8C8s/Data.zst
  direct1  =>  +
  outdir  =>  /tmp/jl_5HVCR5
  direct2  =>  +
  thr2  =>  10
  samplelist  =>  
  featurelist  =>  /tmp/jl_5HVCR5/Feature_Means.csv
  thr1  =>  10

Parsed args:
  input  =>  /tmp/jl_pL8C8s/Data.zst
  direct1  =>  +
  outdir  =>  /tmp/jl_5HVCR5
  direct2  =>  +
  thr2  =>  10
  samplelist  =>  /tmp/jl_5HVCR5/Sample_NoCounts.csv
  featurelist  =>  
  thr1  =>  10

####### GD (Julia API) #######
####### GD (Command line) #######
Parsed args:
  scheduling  =>  "robbins-monro"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6
Parsed args:
  scheduling  =>  "momentum"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  "/tmp/jl_5HVCR5/Eigen_vectors.csv"
  lower  =>  0
  offsetStoch  =>  1.0f-6
Parsed args:
  scheduling  =>  "nag"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  "/tmp/jl_5HVCR5/Loadings.csv"
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6
Parsed args:
  scheduling  =>  "adagrad"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6
####### Oja (Julia API) #######

Progress:   1%|▎                                        |  ETA: 0:03:08
Progress:   1%|▍                                        |  ETA: 0:03:33
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02

Progress:   1%|▎                                        |  ETA: 0:02:53
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01

Progress:   1%|▎                                        |  ETA: 0:03:12
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01

Progress:   1%|▎                                        |  ETA: 0:03:43
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01
####### Oja (Command line) #######
Parsed args:
  scheduling  =>  "robbins-monro"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:04:37
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02
Parsed args:
  scheduling  =>  "momentum"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:06:40
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02
Parsed args:
  scheduling  =>  "nag"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:09:00
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
Parsed args:
  scheduling  =>  "adagrad"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:06:53
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
####### SGD (Julia API) #######

Progress:   1%|▎                                        |  ETA: 0:03:02
Progress:   1%|▍                                        |  ETA: 0:03:51
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02

Progress:   1%|▎                                        |  ETA: 0:04:12
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01

Progress:   1%|▎                                        |  ETA: 0:04:13
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01

Progress:   1%|▎                                        |  ETA: 0:04:21
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01
####### SGD (Command line) #######
Parsed args:
  scheduling  =>  "robbins-monro"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:06:04
Progress:   1%|▍                                        |  ETA: 0:05:00
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
Parsed args:
  scheduling  =>  "momentum"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:06:26
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02
Parsed args:
  scheduling  =>  "nag"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:08:51
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
Parsed args:
  scheduling  =>  "adagrad"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:08:50
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
####### CCIPCA (Julia API) #######

Progress:   1%|▎                                        |  ETA: 0:02:12
Progress:   1%|▍                                        |  ETA: 0:03:08
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01
####### CCIPCA (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-15

Progress:   1%|▎                                        |  ETA: 0:08:56
Progress:   1%|▍                                        |  ETA: 0:07:18
Progress: 100%|█████████████████████████████████████████| Time: 0:00:04
####### RSGD (Julia API) #######

Progress:   1%|▎                                        |  ETA: 0:10:49
Progress:   1%|▍                                        |  ETA: 0:09:13
Progress: 100%|█████████████████████████████████████████| Time: 0:00:05

Progress:   1%|▎                                        |  ETA: 0:04:35
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01

Progress:   1%|▎                                        |  ETA: 0:06:06
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02

Progress:   1%|▎                                        |  ETA: 0:04:57
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02
####### RSGD (Command line) #######
Parsed args:
  scheduling  =>  "robbins-monro"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:11:47
Progress:   1%|▍                                        |  ETA: 0:08:53
Progress: 100%|█████████████████████████████████████████| Time: 0:00:05
Parsed args:
  scheduling  =>  "momentum"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:12:05
Progress: 100%|█████████████████████████████████████████| Time: 0:00:05
Parsed args:
  scheduling  =>  "nag"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:12:52
Progress: 100%|█████████████████████████████████████████| Time: 0:00:05
Parsed args:
  scheduling  =>  "adagrad"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:14:10
Progress: 100%|█████████████████████████████████████████| Time: 0:00:06
####### SVRG (Julia API) #######

Progress:   1%|▎                                        |  ETA: 0:05:37
Progress:   1%|▍                                        |  ETA: 0:06:33
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03

Progress:   1%|▎                                        |  ETA: 0:07:10
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02

Progress:   1%|▎                                        |  ETA: 0:10:13
Progress: 100%|█████████████████████████████████████████| Time: 0:00:04

Progress:   1%|▎                                        |  ETA: 0:08:51
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
####### SVRG (Command line) #######
Parsed args:
  scheduling  =>  "robbins-monro"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:14:45
Progress:   1%|▍                                        |  ETA: 0:11:39
Progress: 100%|█████████████████████████████████████████| Time: 0:00:07
Parsed args:
  scheduling  =>  "momentum"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:15:13
Progress: 100%|█████████████████████████████████████████| Time: 0:00:06
Parsed args:
  scheduling  =>  "nag"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:17:38
Progress: 100%|█████████████████████████████████████████| Time: 0:00:07
Parsed args:
  scheduling  =>  "adagrad"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:16:52
Progress: 100%|█████████████████████████████████████████| Time: 0:00:07
####### RSVRG (Julia API) #######

Progress:   1%|▎                                        |  ETA: 0:04:49
Progress:   1%|▍                                        |  ETA: 0:06:00
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03

Progress:   1%|▎                                        |  ETA: 0:06:10
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02

Progress:   1%|▎                                        |  ETA: 0:09:16
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03

Progress:   1%|▎                                        |  ETA: 0:08:21
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
####### RSVRG (Command line) #######
Parsed args:
  scheduling  =>  "robbins-monro"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:20:57
Progress:   1%|▍                                        |  ETA: 0:15:44
Progress: 100%|█████████████████████████████████████████| Time: 0:00:09
Parsed args:
  scheduling  =>  "momentum"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:23:20
Progress: 100%|█████████████████████████████████████████| Time: 0:00:09
Parsed args:
  scheduling  =>  "nag"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:22:13
Progress: 100%|█████████████████████████████████████████| Time: 0:00:09
Parsed args:
  scheduling  =>  "adagrad"
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:23:18
Progress: 100%|█████████████████████████████████████████| Time: 0:00:09
####### Orthogonal Iteration (Julia API) #######

Progress:   0%|▏                                        |  ETA: 0:06:55
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01
####### Orthogonal Iteration (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  numepoch  =>  "3"
  expvar  =>  0.1f0
  perm  =>  false
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0

Progress:   0%|▏                                        |  ETA: 0:22:42
Progress:  33%|█████████████▊                           |  ETA: 0:00:10
Progress: 100%|█████████████████████████████████████████| Time: 0:00:05
####### Randomized Block Krylov Iteration (Julia API) #######

Progress:   0%|▏                                        |  ETA: 0:00:49
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
Q' A
Q' A' A
svd(Q' A' A)
Q*U
####### Randomized Block Krylov Iteration (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  numepoch  =>  "3"
  expvar  =>  0.1f0
  perm  =>  false
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0

Progress:   0%|▏                                        |  ETA: 0:21:44
Progress:  33%|█████████████▊                           |  ETA: 0:00:09
Progress: 100%|█████████████████████████████████████████| Time: 0:00:05
Q' A
Q' A' A
svd(Q' A' A)
Q*U
####### ARNOLDI (Julia API) #######

Progress:  20%|████████▎                                |  ETA: 0:00:02
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
####### ARNOLDI (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  cper  =>  1.0f0
  scale  =>  "ftt"
  numepoch  =>  "3"
  expvar  =>  0.1f0
  perm  =>  false

Progress:  67%|███████████████████████████▍             |  ETA: 0:00:02
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
####### LANCZOS (Julia API) #######

Progress:  20%|████████▎                                |  ETA: 0:00:00
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
####### LANCZOS (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  cper  =>  1.0f0
  scale  =>  "ftt"
  numepoch  =>  "3"
  expvar  =>  0.1f0
  perm  =>  false

Progress:  67%|███████████████████████████▍             |  ETA: 0:00:02
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
####### HALKO (Julia API) #######
Random Projection : Y = A Ω

Progress:   1%|▎                                        |  ETA: 0:01:06
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
QR factorization : Q = qr(Y)
Subspace iterations (1/2) : qr(A' Q)
qr(A' Q)
Subspace iterations (2/2) : Y = qr(A qr(A' Q))
Q = qr(Y)
Subspace iterations (1/2) : qr(A' Q)
qr(A' Q)
Subspace iterations (2/2) : Y = qr(A qr(A' Q))
Q = qr(Y)
Subspace iterations (1/2) : qr(A' Q)
qr(A' Q)
Subspace iterations (2/2) : Y = qr(A qr(A' Q))
Q = qr(Y)
Calculation of small matrix : B = Q' A
SVD with small matrix : svd(B)
####### HALKO (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  noversamples  =>  5
  cper  =>  1.0f0
  niter  =>  3
  scale  =>  "ftt"
  perm  =>  false
  initV  =>  nothing
  initW  =>  nothing
Random Projection : Y = A Ω

Progress:   1%|▎                                        |  ETA: 0:06:29
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02
QR factorization : Q = qr(Y)
Subspace iterations (1/2) : qr(A' Q)

Progress:   1%|▎                                        |  ETA: 0:01:48
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
qr(A' Q)
Subspace iterations (2/2) : Y = qr(A qr(A' Q))
Q = qr(Y)
Subspace iterations (1/2) : qr(A' Q)
qr(A' Q)
Subspace iterations (2/2) : Y = qr(A qr(A' Q))
Q = qr(Y)
Subspace iterations (1/2) : qr(A' Q)
qr(A' Q)
Subspace iterations (2/2) : Y = qr(A qr(A' Q))
Q = qr(Y)
Calculation of small matrix : B = Q' A
SVD with small matrix : svd(B)
####### ALGORITHM971 (Julia API) #######
Random Projection : Y = A Ω
LU factorization : L = lu(Y)
Normalized power iterations (1/3) : A' L
L = lu(A' L)
Normalized power iterations (2/3) : Y = A lu(A' L)
Normalized power iterations (3/3) : L = lu(A lu(A' L))
Normalized power iterations (1/3) : A' L
L = lu(A' L)
Normalized power iterations (2/3) : Y = A lu(A' L)
Normalized power iterations (3/3) : L = lu(A lu(A' L))
Normalized power iterations (1/3) : A' L
L = lu(A' L)
Normalized power iterations (2/3) : Y = A lu(A' L)
QR factorization  (3/3) : Q = qr(A lu(A' L))
Calculation of small matrix : B = Q' A
SVD with small matrix : svd(B)
####### ALGORITHM971 (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  noversamples  =>  5
  cper  =>  1.0f0
  niter  =>  3
  scale  =>  "ftt"
  perm  =>  false
  initV  =>  nothing
  initW  =>  nothing
Random Projection : Y = A Ω

Progress:   1%|▎                                        |  ETA: 0:06:27
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02
LU factorization : L = lu(Y)
Normalized power iterations (1/3) : A' L

Progress:   1%|▎                                        |  ETA: 0:01:48
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
L = lu(A' L)
Normalized power iterations (2/3) : Y = A lu(A' L)
Normalized power iterations (3/3) : L = lu(A lu(A' L))
Normalized power iterations (1/3) : A' L
L = lu(A' L)
Normalized power iterations (2/3) : Y = A lu(A' L)
Normalized power iterations (3/3) : L = lu(A lu(A' L))
Normalized power iterations (1/3) : A' L
L = lu(A' L)
Normalized power iterations (2/3) : Y = A lu(A' L)
QR factorization  (3/3) : Q = qr(A lu(A' L))
Calculation of small matrix : B = Q' A
SVD with small matrix : svd(B)
####### SINGLEPASS (Julia API) #######
Random Projection : Y = A Ω, Ytilde = A' Ωtilde
QR factorization : Q = qr(Y), Qtilde = qr(Ytilde)
Solve linear equation : Ωtilde' Q B = Ytilde' Qtilde for B
SVD with small matrix : svd(B)
####### SINGLEPASS (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  noversamples  =>  5
  cper  =>  1.0f0
  niter  =>  3
  scale  =>  "ftt"
  perm  =>  false
  initV  =>  nothing
  initW  =>  nothing
Random Projection : Y = A Ω, Ytilde = A' Ωtilde

Progress:   1%|▎                                        |  ETA: 0:02:18
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01
QR factorization : Q = qr(Y), Qtilde = qr(Ytilde)
Solve linear equation : Ωtilde' Q B = Ytilde' Qtilde for B
SVD with small matrix : svd(B)
####### SINGLEPASS2 (Julia API) #######
Random Projection : G = A Ω, H = A' A Ω
Subspace iterations (1/2) : Q = qr(Yi)
Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi))
Subspace iterations (1/2) : Q = qr(Yi)
Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi))
Subspace iterations (1/2) : Q = qr(Yi)
Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi))
SVD with small matrix : svd(B)
####### SINGLEPASS2 (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_5HVCR5/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_5HVCR5"
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  noversamples  =>  5
  cper  =>  1.0f0
  niter  =>  3
  scale  =>  "ftt"
  perm  =>  false
  initV  =>  nothing
  initW  =>  nothing
Random Projection : G = A Ω, H = A' A Ω

Progress:   1%|▎                                        |  ETA: 0:02:12
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01
Subspace iterations (1/2) : Q = qr(Yi)
Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi))
Subspace iterations (1/2) : Q = qr(Yi)
Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi))
Subspace iterations (1/2) : Q = qr(Yi)
Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi))
SVD with small matrix : svd(B)
####### Sparse Randomized SVD (Julia API) #######
Initial Setting...

Progress:  40%|████████████████▍                        |  ETA: 0:00:10
Progress: 100%|█████████████████████████████████████████| Time: 0:00:06
Random Projection : Y = A Ω

Progress:  40%|████████████████▍                        |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
LU factorization : L = lu(Y)
##### Iteration 1 / 3 #####
Normalized power iterations (1/3) : A' L

Progress:  40%|████████████████▍                        |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
Normalized power iterations (2/3) : A A' L
LU decomposition (3/3) : L = lu(A A' L)
##### Iteration 2 / 3 #####
Normalized power iterations (1/3) : A' L
Normalized power iterations (2/3) : A A' L
LU decomposition (3/3) : L = lu(A A' L)
##### Iteration 3 / 3 #####
Normalized power iterations (1/3) : A' L
Normalized power iterations (2/3) : A A' L
QR decomposition  (3/3) : Q = qr(A A' L)
Small matrix computation : B = Q' A

Progress:  40%|████████████████▍                        |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
SVD : B = U Σ V'
####### Sparse Randomized SVD (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_8axsT0/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_8axsT0"
  input  =>  "/tmp/jl_pL8C8s/Data.mtx.zst"
  outdir  =>  "/tmp/jl_8axsT0"
  rowvarlist  =>  ""
  colsumlist  =>  ""
  noversamples  =>  5
  cper  =>  1.0f0
  niter  =>  3
  scale  =>  "ftt"
  chunksize  =>  "51"
  perm  =>  false
  initV  =>  nothing
  initW  =>  nothing
Initial Setting...

Progress:  40%|████████████████▍                        |  ETA: 0:00:06
Progress: 100%|█████████████████████████████████████████| Time: 0:00:04
Random Projection : Y = A Ω

Progress:  40%|████████████████▍                        |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
LU factorization : L = lu(Y)
##### Iteration 1 / 3 #####
Normalized power iterations (1/3) : A' L

Progress:  40%|████████████████▍                        |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
Normalized power iterations (2/3) : A A' L
LU decomposition (3/3) : L = lu(A A' L)
##### Iteration 2 / 3 #####
Normalized power iterations (1/3) : A' L
Normalized power iterations (2/3) : A A' L
LU decomposition (3/3) : L = lu(A A' L)
##### Iteration 3 / 3 #####
Normalized power iterations (1/3) : A' L
Normalized power iterations (2/3) : A A' L
QR decomposition  (3/3) : Q = qr(A A' L)
Small matrix computation : B = Q' A

Progress:  40%|████████████████▍                        |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
SVD : B = U Σ V'
####### Exact Out-of-Core PCA (Dense, Julia API) #######
# 1. Column-wise Mean
# 2. Out-of-Core Covariance Matrix Calculation

Progress:  2    Time: 0:00:00
Progress:  6    Time: 0:00:00
# 3. PC Score (Z = XV) is being calculated.
# 4. Out-of-Core PC Score Calculation
# 5. Delayed Centering Correction
# 6. Normalize W and Calculate Eigenvalues
####### Exact Out-of-Core PCA (Dense, Command line) #######
Parsed args:
  input  =>  "/tmp/jl_pL8C8s/Data.zst"
  outdir  =>  "/tmp/jl_5HVCR5"
  pseudocount  =>  1.0f0
  mode  =>  "dense"
  dim  =>  "3"
  chunksize  =>  "51"
  scale  =>  "raw"
# 1. Column-wise Mean
# 2. Out-of-Core Covariance Matrix Calculation

Progress:  2    Time: 0:00:00
Progress:  6    Time: 0:00:00
# 3. PC Score (Z = XV) is being calculated.
# 4. Out-of-Core PC Score Calculation
# 5. Delayed Centering Correction
# 6. Normalize W and Calculate Eigenvalues
####### Exact Out-of-Core PCA (MM-Sparse, Julia API) #######
# 1. Column-wise Mean
# 2. Out-of-Core Covariance Matrix Calculation

Progress:  2    Time: 0:00:02
Progress:  6    Time: 0:00:02
# 3. PC Score (Z = XV) is being calculated.
# 4. Out-of-Core PC Score Calculation

Progress:  2    Time: 0:00:00
Progress:  6    Time: 0:00:00
# 5. Delayed Centering Correction
# 6. Normalize W and Calculate Eigenvalues
####### Exact Out-of-Core PCA (MM-Sparse, Command line) #######
Parsed args:
  input  =>  "/tmp/jl_pL8C8s/Data.mtx.zst"
  outdir  =>  "/tmp/jl_8axsT0"
  pseudocount  =>  1.0f0
  mode  =>  "sparse_mm"
  dim  =>  "3"
  chunksize  =>  "51"
  scale  =>  "raw"
# 1. Column-wise Mean
# 2. Out-of-Core Covariance Matrix Calculation

Progress:  2    Time: 0:00:01
Progress:  6    Time: 0:00:01
# 3. PC Score (Z = XV) is being calculated.
# 4. Out-of-Core PC Score Calculation

Progress:  2    Time: 0:00:00
Progress:  6    Time: 0:00:00
# 5. Delayed Centering Correction
# 6. Normalize W and Calculate Eigenvalues
####### Exact Out-of-Core PCA (BinCOO-Sparse, Julia API) #######
# 1. Column-wise Mean
# 2. Out-of-Core Covariance Matrix Calculation
# 3. PC Score (Z = XV) is being calculated.
# 4. Out-of-Core PC Score Calculation

Progress:  2    Time: 0:00:01
Progress:  6    Time: 0:00:01
# 5. Delayed Centering Correction
# 6. Normalize W and Calculate Eigenvalues
####### Exact Out-of-Core PCA (BinCOO-Sparse, Command line) #######
Parsed args:
  input  =>  "/tmp/jl_pL8C8s/Data.bincoo.zst"
  outdir  =>  "/tmp/jl_8axsT0"
  pseudocount  =>  1.0f0
  mode  =>  "sparse_bincoo"
  dim  =>  "3"
  chunksize  =>  "51"
  scale  =>  "raw"
# 1. Column-wise Mean
# 2. Out-of-Core Covariance Matrix Calculation

Progress:  2    Time: 0:00:01
Progress:  6    Time: 0:00:01
# 3. PC Score (Z = XV) is being calculated.
# 4. Out-of-Core PC Score Calculation

Progress:  2    Time: 0:00:00
Progress:  6    Time: 0:00:00
# 5. Delayed Centering Correction
# 6. Normalize W and Calculate Eigenvalues
Inner product (Dense): 0.9952312170046721
Inner product (Sparse MM): 0.9999998730475237
Inner product (Sparse BinCOO): 0.9999998730475237
All tests completed.
     Testing OnlinePCA tests passed 

Testing completed after 2484.33s

PkgEval succeeded after 2649.83s