Package evaluation of DynamicHMCModels on Julia 1.13.0-DEV.582 (c0a1728d50*) started at 2025-05-14T17:47:47.794 ################################################################################ # Set-up # Set-up completed after 0.29s ################################################################################ # Installation # Installing DynamicHMCModels... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [6266e5bf] + DynamicHMCModels v2.1.4 Updating `~/.julia/environments/v1.13/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [4fba245c] + ArrayInterface v7.19.0 ⌅ [6e4b80f9] + BenchmarkTools v0.7.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.6 ⌅ [336ed68f] + CSV v0.8.5 [d360d2e6] + ChainRulesCore v1.25.1 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 ⌃ [a93c6f00] + DataFrames v1.4.4 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.120 ⌅ [ffbed154] + DocStringExtensions v0.8.6 ⌃ [bbc10e6e] + DynamicHMC v3.3.0 [6266e5bf] + DynamicHMCModels v2.1.4 [1a297f60] + FillArrays v1.13.0 ⌅ [f6369f11] + ForwardDiff v0.10.38 [46192b85] + GPUArraysCore v0.2.0 [3e5b6fbb] + HostCPUFeatures v0.1.17 [615f187c] + IfElse v0.1.1 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 ⌅ [92d709cd] + IrrationalConstants v0.1.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [1fad7336] + LazyStack v0.1.3 ⌅ [6fdf6af0] + LogDensityProblems v0.10.6 [2ab3a3ac] + LogExpFunctions v0.3.29 ⌅ [6e857e4b] + MCMCDiagnostics v0.3.0 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [e1d29d7a] + Missings v1.2.0 ⌅ [0987c9cc] + MonteCarloMeasurements v0.10.4 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.35 [65ce6f38] + PackageExtensionCompat v1.0.2 [d96e819e] + Parameters v0.12.3 ⌅ [69de0a69] + Parsers v1.1.2 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 ⌅ [79098fc4] + Rmath v0.7.1 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [91c51154] + SentinelArrays v1.4.8 [66db9d55] + SnoopPrecompile v1.0.3 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 ⌅ [2913bbd2] + StatsBase v0.33.21 ⌅ [4c63d2b9] + StatsFuns v0.9.18 [5e0ebb24] + Strided v2.3.0 [4db3bf67] + StridedViews v0.4.1 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [02d47bb6] + TensorCast v0.4.9 ⌅ [84d833dd] + TransformVariables v0.3.12 [24ddb15e] + TransmuteDims v0.1.17 [9d95972d] + TupleTools v1.6.0 [3a884ed6] + UnPack v1.0.2 [3d5dd08c] + VectorizationBase v0.21.71 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [f50d1b31] + Rmath_jll v0.4.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.2.25 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 7.72s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 2992.4 ms ✓ BenchmarkTools 9176.5 ms ✓ StatsBase 5718.3 ms ✓ SpecialFunctions 5449.7 ms ✓ MCMCDiagnostics 4725.0 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 20621.3 ms ✓ ForwardDiff 18841.5 ms ✓ StatsFuns 4804.1 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 5271.1 ms ✓ TransformVariables 32899.3 ms ✓ Distributions 5239.6 ms ✓ LogDensityProblems 7469.5 ms ✓ Distributions → DistributionsTestExt 7753.6 ms ✓ Distributions → DistributionsChainRulesCoreExt 54430.3 ms ✓ DynamicHMC 72059.3 ms ✓ MonteCarloMeasurements 213618.5 ms ✓ DynamicHMCModels 16 dependencies successfully precompiled in 474 seconds. 134 already precompiled. 1 dependency had output during precompilation: ┌ DynamicHMCModels │ WARNING: Constructor for type "UInt64" was extended in `CSV` without explicit qualification or import. │ NOTE: Assumed "UInt64" refers to `Base.UInt64`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function UInt64 end`. │ Hint: To silence the warning, qualify `UInt64` as `Base.UInt64` in the method signature or explicitly `import Base: UInt64`. │ WARNING: Constructor for type "Int16" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Int16" refers to `Base.Int16`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Int16 end`. │ Hint: To silence the warning, qualify `Int16` as `Base.Int16` in the method signature or explicitly `import Base: Int16`. │ WARNING: Constructor for type "Int64" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Int64" refers to `Base.Int64`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Int64 end`. │ Hint: To silence the warning, qualify `Int64` as `Base.Int64` in the method signature or explicitly `import Base: Int64`. │ WARNING: Constructor for type "Int32" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Int32" refers to `Base.Int32`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Int32 end`. │ Hint: To silence the warning, qualify `Int32` as `Base.Int32` in the method signature or explicitly `import Base: Int32`. │ WARNING: Constructor for type "UInt8" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "UInt8" refers to `Base.UInt8`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function UInt8 end`. │ Hint: To silence the warning, qualify `UInt8` as `Base.UInt8` in the method signature or explicitly `import Base: UInt8`. │ WARNING: Constructor for type "UInt16" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "UInt16" refers to `Base.UInt16`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function UInt16 end`. │ Hint: To silence the warning, qualify `UInt16` as `Base.UInt16` in the method signature or explicitly `import Base: UInt16`. │ WARNING: Constructor for type "Float32" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Float32" refers to `Base.Float32`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Float32 end`. │ Hint: To silence the warning, qualify `Float32` as `Base.Float32` in the method signature or explicitly `import Base: Float32`. │ WARNING: Constructor for type "UInt64" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "UInt64" refers to `Base.UInt64`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function UInt64 end`. │ Hint: To silence the warning, qualify `UInt64` as `Base.UInt64` in the method signature or explicitly `import Base: UInt64`. │ WARNING: Constructor for type "Bool" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Bool" refers to `Base.Bool`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Bool end`. │ Hint: To silence the warning, qualify `Bool` as `Base.Bool` in the method signature or explicitly `import Base: Bool`. │ WARNING: Constructor for type "Int8" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Int8" refers to `Base.Int8`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Int8 end`. │ Hint: To silence the warning, qualify `Int8` as `Base.Int8` in the method signature or explicitly `import Base: Int8`. │ WARNING: Constructor for type "Float64" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Float64" refers to `Base.Float64`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Float64 end`. │ Hint: To silence the warning, qualify `Float64` as `Base.Float64` in the method signature or explicitly `import Base: Float64`. │ WARNING: Constructor for type "UInt32" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "UInt32" refers to `Base.UInt32`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function UInt32 end`. │ Hint: To silence the warning, qualify `UInt32` as `Base.UInt32` in the method signature or explicitly `import Base: UInt32`. │ WARNING: Constructor for type "Float16" was extended in `VectorizationBase` without explicit qualification or import. │ NOTE: Assumed "Float16" refers to `Base.Float16`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Float16 end`. │ Hint: To silence the warning, qualify `Float16` as `Base.Float16` in the method signature or explicitly `import Base: Float16`. └ Precompilation completed after 478.21s ################################################################################ # Loading # Loading DynamicHMCModels... Precompiling packages... 9023.7 ms ✓ JSON 2828.0 ms ✓ BenchmarkTools 2 dependencies successfully precompiled in 12 seconds. 8 already precompiled. ┌ Warning: Error requiring `ForwardDiff` from `LogDensityProblems` │ exception = │ LoadError: ConcurrencyViolationError("deadlock detected in loading Unicode using Unicode (while loading REPL and StridedViewsPtrArraysExt and FillArraysStatisticsExt and LaTeXStrings and Markdown and FillArraysPDMatsExt and SuiteSparse and StatsAPI and ArrayInterfaceStaticArraysCoreExt and AliasTables and CompatLinearAlgebraExt and FillArrays and PackageExtensionCompat and Adapt and Future and StaticArrayInterface and PtrArrays and AdaptSparseArraysExt and MonteCarloMeasurements and StatsFuns and ArrayInterfaceChainRulesCoreExt and DynamicHMCModels and HostCPUFeatures and SparseArrays and InverseFunctions and FillArraysSparseArraysExt and Tables and Serialization and Static and PrettyTables and LayoutPointers and AdaptStaticArraysExt and GPUArraysCore and BenchmarkTools and StridedViews and SparseArraysExt and SuiteSparse_jll and Distributed and BitTwiddlingConvenienceFunctions and SIMDTypes and DynamicHMC and TupleTools and SpecialFunctionsChainRulesCoreExt and VectorizationBase and SortingAlgorithms and ForwardDiffStaticArraysExt and InteractiveUtils and StatsBase and Parsers and Rmath and LazyStack and StaticArraysChainRulesCoreExt and StaticArrayInterfaceStaticArraysExt and TensorCast and InverseFunctionsDatesExt and IfElse and PrecompileTools and SentinelArrays and LogDensityProblems and Strided and RecipesBase and StaticArrays and StaticArraysStatisticsExt and JuliaSyntaxHighlighting and DataFrames and QuadGK and Mmap and Crayons and Compat and SLEEFPirates and Distributions and InvertedIndices and DataValueInterfaces and CSV and Statistics and ArrayInterface and DataStructures and IteratorInterfaceExtensions and PooledArrays and DataAPI and StringManipulation and ProgressMeter and StyledStrings and ChainRulesCore and CPUSummary and TableTraits and LogExpFunctionsChainRulesCoreExt and PDMats and LogExpFunctionsInverseFunctionsExt and ArrayInterfaceSparseArraysExt and Missings and TransmuteDims and CommonWorldInvalidations and ManualMemory and ArrayInterfaceGPUArraysCoreExt and Base64 and ChainRulesCoreSparseArraysExt and CpuId and DistributionsChainRulesCoreExt and SnoopPrecompile and Rmath_jll)") │ Stacktrace: │ [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) │ @ Base ./loading.jl:2183 │ [2] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) │ @ Base ./loading.jl:2017 │ [3] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2600 │ [4] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2466 │ [5] macro expansion │ @ ./loading.jl:2394 [inlined] │ [6] macro expansion │ @ ./lock.jl:376 [inlined] │ [7] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2359 │ [8] require │ @ ./loading.jl:2335 [inlined] │ [9] eval_import_path │ @ ./module.jl:36 [inlined] │ [10] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [11] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) │ @ Base ./module.jl:101 │ [12] top-level scope │ @ ~/.julia/packages/LogDensityProblems/mTlVj/src/AD_ForwardDiff.jl:6 │ [13] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:310 │ [14] top-level scope │ @ ~/.julia/packages/Requires/1eCOK/src/Requires.jl:40 │ [15] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [16] EvalInto │ @ ./boot.jl:494 [inlined] │ [17] (::LogDensityProblems.var"#__init__##10#__init__##11")() │ @ LogDensityProblems ~/.julia/packages/Requires/1eCOK/src/require.jl:101 │ [18] macro expansion │ @ ./timing.jl:461 [inlined] │ [19] err(f::Any, listener::Module, modname::String, file::String, line::Any) │ @ Requires ~/.julia/packages/Requires/1eCOK/src/require.jl:47 │ [20] (::LogDensityProblems.var"#__init__##8#__init__##9")() │ @ LogDensityProblems ~/.julia/packages/Requires/1eCOK/src/require.jl:100 │ [21] withpath(f::Any, path::String) │ @ Requires ~/.julia/packages/Requires/1eCOK/src/require.jl:37 │ [22] (::LogDensityProblems.var"#__init__##6#__init__##7")() │ @ LogDensityProblems ~/.julia/packages/Requires/1eCOK/src/require.jl:99 │ [23] listenpkg(f::Any, pkg::Base.PkgId) │ @ Requires ~/.julia/packages/Requires/1eCOK/src/require.jl:20 │ [24] macro expansion │ @ ~/.julia/packages/Requires/1eCOK/src/require.jl:98 [inlined] │ [25] __init__() │ @ LogDensityProblems ~/.julia/packages/LogDensityProblems/mTlVj/src/LogDensityProblems.jl:234 │ [26] run_module_init(mod::Module, i::Int64) │ @ Base ./loading.jl:1416 │ [27] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) │ @ Base ./loading.jl:1404 │ [28] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) │ @ Base ./loading.jl:1292 │ [29] _include_from_serialized │ @ ./loading.jl:1246 [inlined] │ [30] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) │ @ Base ./loading.jl:2075 │ [31] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2600 │ [32] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2466 │ [33] macro expansion │ @ ./loading.jl:2394 [inlined] │ [34] macro expansion │ @ ./lock.jl:376 [inlined] │ [35] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2359 │ [36] require │ @ ./loading.jl:2335 [inlined] │ [37] eval_import_path │ @ ./module.jl:36 [inlined] │ [38] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [39] _eval_using(to::Module, path::Expr) │ @ Base ./module.jl:137 │ [40] top-level scope │ @ none:1 │ [41] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [42] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:297 │ [43] _start() │ @ Base ./client.jl:564 │ in expression starting at /home/pkgeval/.julia/packages/LogDensityProblems/mTlVj/src/AD_ForwardDiff.jl:6 └ @ Requires ~/.julia/packages/Requires/1eCOK/src/require.jl:51 Loading completed after 47.58s PkgEval succeeded after 550.71s