Package evaluation of PosDefManifoldML on Julia 1.13.0-DEV.1234 (bbaa34b41d*) started at 2025-10-02T08:26:51.340 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.39s ################################################################################ # Installation # Installing PosDefManifoldML... Resolving package versions... Installed CompositionsBase ──────────── v0.1.2 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed MicroCollections ──────────── v0.2.0 Installed DefineSingletons ──────────── v0.1.2 Installed MacroTools ────────────────── v0.5.16 Installed ThreadedScans ─────────────── v0.1.0 Installed DataStructures ────────────── v0.18.22 Installed Adapt ─────────────────────── v4.4.0 Installed InlineStrings ─────────────── v1.4.5 Installed ConstructionBase ──────────── v1.6.0 Installed HypergeometricFunctions ───── v0.3.28 Installed AliasTables ───────────────── v1.1.3 Installed FillArrays ────────────────── v1.14.0 Installed PosDefManifoldML ──────────── v0.5.14 Installed StatsBase ─────────────────── v0.33.21 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed OrderedCollections ────────── v1.8.1 Installed TSVD ──────────────────────── v0.4.4 Installed DataAPI ───────────────────── v1.16.0 Installed Compat ────────────────────── v4.18.1 Installed Combinatorics ─────────────── v1.0.3 Installed Statistics ────────────────── v1.11.1 Installed PrecompileTools ───────────── v1.3.3 Installed InvertedIndices ───────────── v1.3.1 Installed DataValueInterfaces ───────── v1.0.0 Installed ArgCheck ──────────────────── v2.5.0 Installed StatsAPI ──────────────────── v1.7.1 Installed InitialValues ─────────────── v0.3.1 Installed ExternalDocstrings ────────── v0.1.1 Installed LIBSVM ────────────────────── v0.8.1 Installed PosDefManifold ────────────── v0.5.3 Installed StaticArraysCore ──────────── v1.4.3 Installed SentinelArrays ────────────── v1.4.8 Installed IrrationalConstants ───────── v0.2.4 Installed BangBang ──────────────────── v0.4.4 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed LIBLINEAR ─────────────────── v0.7.1 Installed QuadGK ────────────────────── v2.11.2 Installed Requires ──────────────────── v1.3.1 Installed StringManipulation ────────── v0.4.1 Installed Diagonalizations ──────────── v0.2.2 Installed libsvm_jll ────────────────── v3.25.0+0 Installed glmnet_jll ────────────────── v5.0.0+0 Installed Rmath ─────────────────────── v0.8.0 Installed LogExpFunctions ───────────── v0.3.29 Installed ScikitLearnBase ───────────── v0.5.0 Installed SplittablesBase ───────────── v0.1.15 Installed StatsFuns ─────────────────── v1.5.0 Installed WoodburyMatrices ──────────── v1.0.0 Installed Transducers ───────────────── v0.4.85 Installed CovarianceEstimation ──────── v0.2.13 Installed Distributions ─────────────── v0.25.120 Installed PrettyTables ──────────────── v3.0.11 Installed Tables ────────────────────── v1.12.1 Installed PtrArrays ─────────────────── v1.3.0 Installed Referenceables ────────────── v0.1.3 Installed InverseFunctions ──────────── v0.1.17 Installed DataFrames ────────────────── v1.8.0 Installed SpecialFunctions ──────────── v2.5.1 Installed Reexport ──────────────────── v1.2.2 Installed GLMNet ────────────────────── v0.7.0 Installed Setfield ──────────────────── v1.1.2 Installed Missings ──────────────────── v1.2.0 Installed Baselet ───────────────────── v0.1.1 Installed Preferences ───────────────── v1.5.0 Installed PooledArrays ──────────────── v1.4.3 Installed JLLWrappers ───────────────── v1.7.1 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed TableTraits ───────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed PDMats ────────────────────── v0.11.35 Installed Crayons ───────────────────── v4.1.1 Installed SortingAlgorithms ─────────── v1.2.2 Installed Folds ─────────────────────── v0.2.10 Installed PermutationTests ──────────── v0.2.1 Installed DocStringExtensions ───────── v0.9.5 Installed Accessors ─────────────────── v0.1.42 Installed liblinear_jll ─────────────── v2.47.0+0 Installing 6 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact liblinear 125.3 KiB Installed artifact libsvm 124.2 KiB Installed artifact glmnet 154.7 KiB Updating `~/.julia/environments/v1.13/Project.toml` [a07f4532] + PosDefManifoldML v0.5.14 Updating `~/.julia/environments/v1.13/Manifest.toml` [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [861a8166] + Combinatorics v1.0.3 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [587fd27a] + CovarianceEstimation v0.2.13 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 ⌃ [9cd687f3] + Diagonalizations v0.2.2 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [e189563c] + ExternalDocstrings v0.1.1 [1a297f60] + FillArrays v1.14.0 [41a02a25] + Folds v0.2.10 ⌃ [8d5ece8b] + GLMNet v0.7.0 [34004b35] + HypergeometricFunctions v0.3.28 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [2d691ee1] + LIBLINEAR v0.7.1 [b1bec4e5] + LIBSVM v0.8.1 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [dd25e4c7] + PermutationTests v0.2.1 [2dfb63ee] + PooledArrays v1.4.3 [f45a3650] + PosDefManifold v0.5.3 [a07f4532] + PosDefManifoldML v0.5.14 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.0.11 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [42d2dcc6] + Referenceables v0.1.3 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [6e75b9c4] + ScikitLearnBase v0.5.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [171d559e] + SplittablesBase v0.1.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.0 [892a3eda] + StringManipulation v0.4.1 [9449cd9e] + TSVD v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [24d252fe] + ThreadedScans v0.1.0 [28d57a85] + Transducers v0.4.85 [efce3f68] + WoodburyMatrices v1.0.0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [78c6b45d] + glmnet_jll v5.0.0+0 [275f1f90] + liblinear_jll v2.47.0+0 [08558c22] + libsvm_jll v3.25.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 11.36s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4546.4 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 2 direct dependencies failed to precompile: GLMNet Failed to precompile GLMNet [8d5ece8b-de18-5317-b113-243142960cc6] to "/home/pkgeval/.julia/compiled/v1.13/GLMNet/jl_HL0Yfv" (ProcessExited(1)). ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/e80442d59af73a1877a108eb3fab2cd12d25dc56/lib/libglmnet.so" libgfortran.so.5: cannot open shared object file: No such file or directory Stacktrace: [1] #dlopen#3 @ ./libdl.jl:120 [inlined] [2] dlopen @ ./libdl.jl:119 [inlined] [3] dlopen(s::String) @ Base.Libc.Libdl ./libdl.jl:119 [4] __init__() @ glmnet_jll ~/.julia/packages/glmnet_jll/en9XD/src/wrappers/x86_64-linux-gnu-libgfortran5.jl:37 [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1413 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1401 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1289 [8] _include_from_serialized @ ./loading.jl:1246 [inlined] [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2101 [10] _require_search_from_serialized @ ./loading.jl:1995 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2645 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2511 [13] macro expansion @ ./loading.jl:2439 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2403 [16] require @ ./loading.jl:2379 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/GLMNet/C8WKF/src/GLMNet.jl:3 [21] include(mod::Module, _path::String) @ Base ./Base.jl:309 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3072 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2918 [26] include_string @ ./loading.jl:2928 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:342 [28] _start() @ Base ./client.jl:577 during initialization of module glmnet_jll in expression starting at /home/pkgeval/.julia/packages/GLMNet/C8WKF/src/GLMNet.jl:1 in expression starting at stdin:5 PosDefManifoldML Failed to precompile PosDefManifoldML [a07f4532-e2c9-11e9-2ea2-6d98fe4a1f21] to "/home/pkgeval/.julia/compiled/v1.13/PosDefManifoldML/jl_54tNfl" (ProcessExited(1)). ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/e80442d59af73a1877a108eb3fab2cd12d25dc56/lib/libglmnet.so" libgfortran.so.5: cannot open shared object file: No such file or directory Stacktrace: [1] #dlopen#3 @ ./libdl.jl:120 [inlined] [2] dlopen @ ./libdl.jl:119 [inlined] [3] dlopen(s::String) @ Base.Libc.Libdl ./libdl.jl:119 [4] __init__() @ glmnet_jll ~/.julia/packages/glmnet_jll/en9XD/src/wrappers/x86_64-linux-gnu-libgfortran5.jl:37 [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1413 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1401 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1289 [8] _include_from_serialized @ ./loading.jl:1246 [inlined] [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2101 [10] _require_search_from_serialized @ ./loading.jl:1995 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2645 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2511 [13] macro expansion @ ./loading.jl:2439 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2403 [16] require @ ./loading.jl:2379 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/GLMNet/C8WKF/src/GLMNet.jl:3 [21] include(mod::Module, _path::String) @ Base ./Base.jl:309 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3072 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2918 [26] include_string @ ./loading.jl:2928 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:342 [28] _start() @ Base ./client.jl:577 during initialization of module glmnet_jll in expression starting at /home/pkgeval/.julia/packages/GLMNet/C8WKF/src/GLMNet.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile GLMNet [8d5ece8b-de18-5317-b113-243142960cc6] to "/home/pkgeval/.julia/compiled/v1.13/GLMNet/jl_8etZ7T" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, loadable_exts::Nothing) @ Base ./loading.jl:3357 [3] kwcall(::@NamedTuple{loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3237 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2698 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#234 @ ./reflection.jl:1335 [inlined] [9] invokelatest_gr @ ./reflection.jl:1327 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3928 [11] maybe_cachefile_lock @ ./loading.jl:3925 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2673 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2511 [14] macro expansion @ ./loading.jl:2439 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2403 [17] require @ ./loading.jl:2379 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [21] top-level scope @ ~/.julia/packages/PosDefManifoldML/qtrCi/src/PosDefManifoldML.jl:20 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3072 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2918 [27] include_string @ ./loading.jl:2928 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:342 [29] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/PosDefManifoldML/qtrCi/src/PosDefManifoldML.jl:15 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 388.63s ################################################################################ # Testing # Testing PosDefManifoldML Status `/tmp/jl_Ui23Lx/Project.toml` [a93c6f00] DataFrames v1.8.0 ⌃ [9cd687f3] Diagonalizations v0.2.2 [31c24e10] Distributions v0.25.120 [41a02a25] Folds v0.2.10 ⌃ [8d5ece8b] GLMNet v0.7.0 [b1bec4e5] LIBSVM v0.8.1 [dd25e4c7] PermutationTests v0.2.1 [f45a3650] PosDefManifold v0.5.3 [a07f4532] PosDefManifoldML v0.5.14 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 ⌅ [2913bbd2] StatsBase v0.33.21 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [9e88b42a] Serialization v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Ui23Lx/Manifest.toml` [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [861a8166] Combinatorics v1.0.3 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [587fd27a] CovarianceEstimation v0.2.13 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 ⌃ [9cd687f3] Diagonalizations v0.2.2 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [e189563c] ExternalDocstrings v0.1.1 [1a297f60] FillArrays v1.14.0 [41a02a25] Folds v0.2.10 ⌃ [8d5ece8b] GLMNet v0.7.0 [34004b35] HypergeometricFunctions v0.3.28 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [2d691ee1] LIBLINEAR v0.7.1 [b1bec4e5] LIBSVM v0.8.1 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [dd25e4c7] PermutationTests v0.2.1 [2dfb63ee] PooledArrays v1.4.3 [f45a3650] PosDefManifold v0.5.3 [a07f4532] PosDefManifoldML v0.5.14 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.0.11 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [42d2dcc6] Referenceables v0.1.3 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [6e75b9c4] ScikitLearnBase v0.5.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.5.1 [171d559e] SplittablesBase v0.1.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.0 [892a3eda] StringManipulation v0.4.1 [9449cd9e] TSVD v0.4.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [24d252fe] ThreadedScans v0.1.0 [28d57a85] Transducers v0.4.85 [efce3f68] WoodburyMatrices v1.0.0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [78c6b45d] glmnet_jll v5.0.0+0 [275f1f90] liblinear_jll v2.47.0+0 [08558c22] libsvm_jll v3.25.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ERROR: LoadError: The following 2 direct dependencies failed to precompile: GLMNet Failed to precompile GLMNet [8d5ece8b-de18-5317-b113-243142960cc6] to "/home/pkgeval/.julia/compiled/v1.13/GLMNet/jl_kbgV7X" (ProcessExited(1)). ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/e80442d59af73a1877a108eb3fab2cd12d25dc56/lib/libglmnet.so" libgfortran.so.5: cannot open shared object file: No such file or directory Stacktrace: [1] #dlopen#3 @ ./libdl.jl:120 [inlined] [2] dlopen @ ./libdl.jl:119 [inlined] [3] dlopen(s::String) @ Base.Libc.Libdl ./libdl.jl:119 [4] __init__() @ glmnet_jll ~/.julia/packages/glmnet_jll/en9XD/src/wrappers/x86_64-linux-gnu-libgfortran5.jl:37 [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1413 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1401 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1289 [8] _include_from_serialized @ ./loading.jl:1246 [inlined] [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2101 [10] _require_search_from_serialized @ ./loading.jl:1995 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2645 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2511 [13] macro expansion @ ./loading.jl:2439 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2403 [16] require @ ./loading.jl:2379 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/GLMNet/C8WKF/src/GLMNet.jl:3 [21] include(mod::Module, _path::String) @ Base ./Base.jl:309 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3072 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2918 [26] include_string @ ./loading.jl:2928 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:342 [28] _start() @ Base ./client.jl:577 during initialization of module glmnet_jll in expression starting at /home/pkgeval/.julia/packages/GLMNet/C8WKF/src/GLMNet.jl:1 in expression starting at stdin:5 PosDefManifoldML Failed to precompile PosDefManifoldML [a07f4532-e2c9-11e9-2ea2-6d98fe4a1f21] to "/home/pkgeval/.julia/compiled/v1.13/PosDefManifoldML/jl_eUt32O" (ProcessExited(1)). ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/e80442d59af73a1877a108eb3fab2cd12d25dc56/lib/libglmnet.so" libgfortran.so.5: cannot open shared object file: No such file or directory Stacktrace: [1] #dlopen#3 @ ./libdl.jl:120 [inlined] [2] dlopen @ ./libdl.jl:119 [inlined] [3] dlopen(s::String) @ Base.Libc.Libdl ./libdl.jl:119 [4] __init__() @ glmnet_jll ~/.julia/packages/glmnet_jll/en9XD/src/wrappers/x86_64-linux-gnu-libgfortran5.jl:37 [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1413 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1401 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1289 [8] _include_from_serialized @ ./loading.jl:1246 [inlined] [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2101 [10] _require_search_from_serialized @ ./loading.jl:1995 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2645 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2511 [13] macro expansion @ ./loading.jl:2439 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2403 [16] require @ ./loading.jl:2379 [inlined] [17] eval_import_path @ ./module.jl:36 [inlined] [18] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [19] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [20] top-level scope @ ~/.julia/packages/GLMNet/C8WKF/src/GLMNet.jl:3 [21] include(mod::Module, _path::String) @ Base ./Base.jl:309 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3072 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2918 [26] include_string @ ./loading.jl:2928 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:342 [28] _start() @ Base ./client.jl:577 during initialization of module glmnet_jll in expression starting at /home/pkgeval/.julia/packages/GLMNet/C8WKF/src/GLMNet.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile GLMNet [8d5ece8b-de18-5317-b113-243142960cc6] to "/home/pkgeval/.julia/compiled/v1.13/GLMNet/jl_JzPrdo" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, loadable_exts::Nothing) @ Base ./loading.jl:3357 [3] kwcall(::@NamedTuple{loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3237 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2698 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#234 @ ./reflection.jl:1335 [inlined] [9] invokelatest_gr @ ./reflection.jl:1327 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3928 [11] maybe_cachefile_lock @ ./loading.jl:3925 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2673 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2511 [14] macro expansion @ ./loading.jl:2439 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2403 [17] require @ ./loading.jl:2379 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [21] top-level scope @ ~/.julia/packages/PosDefManifoldML/qtrCi/src/PosDefManifoldML.jl:20 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3072 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2918 [27] include_string @ ./loading.jl:2928 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:342 [29] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/PosDefManifoldML/qtrCi/src/PosDefManifoldML.jl:15 in expression starting at stdin:5 in expression starting at /home/pkgeval/.julia/packages/PosDefManifoldML/qtrCi/test/runtests.jl:1 Testing failed after 31.31s ERROR: LoadError: Package PosDefManifoldML errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2673 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2522 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 461.42s: package requires a missing binary dependency