Package evaluation of PhysiologyAnalysis on Julia 1.13.0-DEV.1234 (bbaa34b41d*) started at 2025-10-02T08:35:40.732


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# Set-up
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Installing PkgEval dependencies (TestEnv)...

Set-up completed after 10.83s


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# Installation
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Installing PhysiologyAnalysis...
   Resolving package versions...
   Installed MKL_jll ────────────────────────── v2025.2.0+0
   Installed ImageIO ────────────────────────── v0.6.9
   Installed MosaicViews ────────────────────── v0.3.4
   Installed Libtiff_jll ────────────────────── v4.7.2+0
   Installed Bzip2_jll ──────────────────────── v1.0.9+0
   Installed CommonWorldInvalidations ───────── v1.0.0
   Installed InlineStrings ──────────────────── v1.4.5
   Installed ChunkCodecLibZstd ──────────────── v1.0.0
   Installed SIMDTypes ──────────────────────── v0.1.0
   Installed OrderedCollections ─────────────── v1.8.1
   Installed CpuId ──────────────────────────── v0.3.1
   Installed NearestNeighbors ───────────────── v0.4.22
   Installed ImageMagick ────────────────────── v1.4.2
   Installed LsqFit ─────────────────────────── v0.15.1
   Installed CustomUnitRanges ───────────────── v1.0.2
   Installed SentinelArrays ─────────────────── v1.4.8
   Installed Giflib_jll ─────────────────────── v5.2.3+0
   Installed HypothesisTests ────────────────── v0.11.5
   Installed SimpleWeightedGraphs ───────────── v1.5.0
   Installed NaNMath ────────────────────────── v1.1.3
   Installed Distances ──────────────────────── v0.10.12
   Installed StaticArrayInterface ───────────── v1.8.0
   Installed FileIO ─────────────────────────── v1.17.0
   Installed QuadGK ─────────────────────────── v2.11.2
   Installed Graphics ───────────────────────── v1.1.3
   Installed HistogramThresholding ──────────── v0.3.1
   Installed OpenSpecFun_jll ────────────────── v0.5.6+0
   Installed Xorg_libxcb_jll ────────────────── v1.17.1+0
   Installed Reexport ───────────────────────── v1.2.2
   Installed ScopedValues ───────────────────── v1.5.0
   Installed WoodburyMatrices ───────────────── v1.0.0
   Installed Tables ─────────────────────────── v1.12.1
   Installed NLSolversBase ──────────────────── v7.10.0
   Installed InverseFunctions ───────────────── v0.1.17
   Installed Preferences ────────────────────── v1.5.0
   Installed Missings ───────────────────────── v1.2.0
   Installed LERC_jll ───────────────────────── v4.0.1+0
   Installed Static ─────────────────────────── v1.3.0
   Installed TZJData ────────────────────────── v1.5.0+2025b
   Installed TableTraits ────────────────────── v1.0.1
   Installed Imath_jll ──────────────────────── v3.1.11+0
   Installed RangeArrays ────────────────────── v0.3.2
   Installed LaTeXStrings ───────────────────── v1.4.0
   Installed MappedArrays ───────────────────── v0.4.2
   Installed Crayons ────────────────────────── v4.1.1
   Installed UnPack ─────────────────────────── v1.0.2
   Installed SortingAlgorithms ──────────────── v1.2.2
   Installed Polynomials ────────────────────── v4.1.0
   Installed RegionTrees ────────────────────── v0.3.2
   Installed Inflate ────────────────────────── v0.1.5
   Installed DiffResults ────────────────────── v1.1.0
   Installed ADTypes ────────────────────────── v1.18.0
   Installed MacroTools ─────────────────────── v0.5.16
   Installed ManualMemory ───────────────────── v0.1.8
   Installed FillArrays ─────────────────────── v1.14.0
   Installed Quaternions ────────────────────── v0.7.6
   Installed DataStructures ─────────────────── v0.18.22
   Installed OpenEXR_jll ────────────────────── v3.2.4+0
   Installed ArnoldiMethod ──────────────────── v0.4.0
   Installed oneTBB_jll ─────────────────────── v2022.0.0+0
   Installed LazyModules ────────────────────── v0.3.1
   Installed CodecZlib ──────────────────────── v0.7.8
   Installed ExprTools ──────────────────────── v0.1.10
   Installed VectorizationBase ──────────────── v0.21.72
   Installed StatsBase ──────────────────────── v0.34.6
   Installed Xorg_libXau_jll ────────────────── v1.0.13+0
   Installed IntelOpenMP_jll ────────────────── v2025.2.0+0
   Installed DataValueInterfaces ────────────── v1.0.0
   Installed CEnum ──────────────────────────── v0.5.0
   Installed ArrayInterface ─────────────────── v7.20.0
   Installed HostCPUFeatures ────────────────── v0.1.17
   Installed TimeZones ──────────────────────── v1.22.0
   Installed libpng_jll ─────────────────────── v1.6.50+0
   Installed RealDot ────────────────────────── v0.1.0
   Installed IrrationalConstants ────────────── v0.2.4
   Installed CommonSubexpressions ───────────── v0.3.1
   Installed LayoutPointers ─────────────────── v0.1.17
   Installed Clustering ─────────────────────── v0.15.8
   Installed libzip_jll ─────────────────────── v1.11.3+0
   Installed SimpleTraits ───────────────────── v0.9.5
   Installed ImageMetadata ──────────────────── v0.9.10
   Installed ColorVectorSpace ───────────────── v0.11.0
   Installed ImageTransformations ───────────── v0.10.2
   Installed ImageShow ──────────────────────── v0.3.8
   Installed Roots ──────────────────────────── v2.2.10
   Installed libsixel_jll ───────────────────── v1.10.5+0
   Installed Interpolations ─────────────────── v0.15.1
   Installed Scratch ────────────────────────── v1.3.0
   Installed libwebp_jll ────────────────────── v1.6.0+0
   Installed Setfield ───────────────────────── v1.1.2
   Installed PooledArrays ───────────────────── v1.4.3
   Installed ImageMagick_jll ────────────────── v7.1.2005+0
   Installed ImageBinarization ──────────────── v0.3.1
   Installed PDMats ─────────────────────────── v0.11.35
   Installed ImageMorphology ────────────────── v0.4.6
   Installed MetaGraphs ─────────────────────── v0.8.1
   Installed ImageCore ──────────────────────── v0.10.5
   Installed AxisArrays ─────────────────────── v0.4.8
   Installed WorkerUtilities ────────────────── v1.6.1
   Installed PNGFiles ───────────────────────── v0.4.4
   Installed DocStringExtensions ────────────── v0.9.5
   Installed FFTViews ───────────────────────── v0.3.2
   Installed JpegTurbo ──────────────────────── v0.1.6
   Installed Peaks ──────────────────────────── v0.5.3
   Installed CompositionsBase ───────────────── v0.1.2
   Installed CommonSolve ────────────────────── v0.2.4
   Installed Rmath_jll ──────────────────────── v0.5.1+0
   Installed ForwardDiff ────────────────────── v1.2.1
   Installed DifferentiationInterface ───────── v0.7.8
   Installed PkgVersion ─────────────────────── v0.3.3
   Installed StackViews ─────────────────────── v0.1.2
   Installed Ghostscript_jll ────────────────── v9.55.1+0
   Installed AliasTables ────────────────────── v1.1.3
   Installed SLEEFPirates ───────────────────── v0.6.43
   Installed OpenJpeg_jll ───────────────────── v2.5.4+0
   Installed TiledIteration ─────────────────── v0.5.0
   Installed BitTwiddlingConvenienceFunctions ─ v0.1.6
   Installed HashArrayMappedTries ───────────── v0.2.0
   Installed IteratorInterfaceExtensions ────── v1.0.0
   Installed SIMD ───────────────────────────── v3.7.1
   Installed RecipesBase ────────────────────── v1.3.4
   Installed Combinatorics ──────────────────── v1.0.3
   Installed ColorSchemes ───────────────────── v3.31.0
   Installed DataAPI ────────────────────────── v1.16.0
   Installed InvertedIndices ────────────────── v1.3.1
   Installed Netpbm ─────────────────────────── v1.1.1
   Installed ImageQualityIndexes ────────────── v0.3.7
   Installed ImageAxes ──────────────────────── v0.6.12
   Installed ImageDistances ─────────────────── v0.2.17
   Installed StaticArrays ───────────────────── v1.9.15
   Installed Colors ─────────────────────────── v0.13.1
   Installed StaticArraysCore ───────────────── v1.4.3
   Installed Libglvnd_jll ───────────────────── v1.7.1+1
   Installed AbstractFFTs ───────────────────── v1.5.0
   Installed QOI ────────────────────────────── v1.0.1
   Installed ColorTypes ─────────────────────── v0.12.1
   Installed AxisAlgorithms ─────────────────── v1.1.0
   Installed SciMLPublic ────────────────────── v1.0.0
   Installed StringManipulation ─────────────── v0.4.1
   Installed Requires ───────────────────────── v1.3.1
   Installed LogExpFunctions ────────────────── v0.3.29
   Installed DiffRules ──────────────────────── v1.15.1
   Installed CSV ────────────────────────────── v0.10.15
   Installed JSON ───────────────────────────── v0.21.4
   Installed Parsers ────────────────────────── v2.8.3
   Installed Distributions ──────────────────── v0.25.120
   Installed Rmath ──────────────────────────── v0.8.0
   Installed PrettyTables ───────────────────── v3.0.11
   Installed FiniteDiff ─────────────────────── v2.28.1
   Installed CloseOpenIntervals ─────────────── v0.1.13
   Installed StatsFuns ──────────────────────── v1.5.0
   Installed Xorg_libXdmcp_jll ──────────────── v1.1.6+0
   Installed OpenEXR ────────────────────────── v0.3.3
   Installed WeakRefStrings ─────────────────── v1.4.2
   Installed JLLWrappers ────────────────────── v1.7.1
   Installed XZ_jll ─────────────────────────── v5.8.1+0
   Installed IterTools ──────────────────────── v1.10.0
   Installed ChunkCodecCore ─────────────────── v1.0.0
   Installed ThreadingUtilities ─────────────── v0.5.5
   Installed Xorg_xtrans_jll ────────────────── v1.6.0+0
   Installed DataFrames ─────────────────────── v1.8.0
   Installed TiffImages ─────────────────────── v0.11.6
   Installed Accessors ──────────────────────── v0.1.42
   Installed ImageContrastAdjustment ────────── v0.3.12
   Installed Graphs ─────────────────────────── v1.13.1
   Installed FilePathsBase ──────────────────── v0.9.24
   Installed JpegTurbo_jll ──────────────────── v3.1.3+0
   Installed Adapt ──────────────────────────── v4.4.0
   Installed ConstructionBase ───────────────── v1.6.0
   Installed HypergeometricFunctions ────────── v0.3.28
   Installed PaddedViews ────────────────────── v0.5.12
   Installed ImageCorners ───────────────────── v0.1.3
   Installed JLD2 ───────────────────────────── v0.6.2
   Installed Sixel ──────────────────────────── v0.1.5
   Installed Compat ─────────────────────────── v4.18.1
   Installed Xorg_libX11_jll ────────────────── v1.8.12+0
   Installed TranscodingStreams ─────────────── v0.11.3
   Installed CurveFit ───────────────────────── v0.6.1
   Installed TensorCore ─────────────────────── v0.1.1
   Installed LoopVectorization ──────────────── v0.12.172
   Installed Statistics ─────────────────────── v1.11.1
   Installed ImageBase ──────────────────────── v0.1.7
   Installed PrecompileTools ────────────────── v1.3.3
   Installed StatsAPI ───────────────────────── v1.7.1
   Installed OffsetArrays ───────────────────── v1.17.0
   Installed ImageSegmentation ──────────────── v1.9.0
   Installed ProgressMeter ──────────────────── v1.11.0
   Installed WebP ───────────────────────────── v0.1.3
   Installed Ratios ─────────────────────────── v0.4.5
   Installed CPUSummary ─────────────────────── v0.2.7
   Installed ChainRulesCore ─────────────────── v1.26.0
   Installed CoordinateTransformations ──────── v0.6.4
   Installed ChunkCodecLibZlib ──────────────── v1.0.0
   Installed IfElse ─────────────────────────── v0.1.1
   Installed ImageFiltering ─────────────────── v0.7.12
   Installed Parameters ─────────────────────── v0.12.3
   Installed PtrArrays ──────────────────────── v1.3.0
   Installed ComputationalResources ─────────── v0.3.2
   Installed IntervalSets ───────────────────── v0.7.11
   Installed FixedPointNumbers ──────────────── v0.8.5
   Installed SpecialFunctions ───────────────── v2.5.1
   Installed IntegralArrays ─────────────────── v0.1.6
   Installed LittleCMS_jll ──────────────────── v2.17.0+0
   Installed Rotations ──────────────────────── v1.7.1
   Installed FFTW ───────────────────────────── v1.10.0
   Installed FFTW_jll ───────────────────────── v3.3.11+0
   Installed CatIndices ─────────────────────── v0.2.2
   Installed Xorg_libXext_jll ───────────────── v1.3.7+0
   Installed IndirectArrays ─────────────────── v1.0.0
   Installed PolyesterWeave ─────────────────── v0.2.2
   Installed Mocking ────────────────────────── v0.8.1
   Installed Images ─────────────────────────── v0.26.2
   Installed DSP ────────────────────────────── v0.7.10
   Installed ElectroPhysiology ──────────────── v0.5.50
   Installed PhysiologyAnalysis ─────────────── v0.6.48
  Installing 28 artifacts
   Installed artifact Rmath         121.9 KiB
   Installed artifact libzip        177.6 KiB
   Installed artifact OpenJpeg      421.4 KiB
   Installed artifact Bzip2         503.5 KiB
   Installed artifact tzjdata       112.5 KiB
   Installed artifact Xorg_libXdmcp 67.7 KiB
   Installed artifact Xorg_libXext  699.9 KiB
   Installed artifact OpenSpecFun   194.9 KiB
   Installed artifact libpng        328.4 KiB
   Installed artifact Xorg_libXau   36.6 KiB
   Installed artifact FFTW          2.2 MiB
   Installed artifact Imath         182.8 KiB
   Installed artifact Xorg_libxcb   2.1 MiB
   Installed artifact OpenEXR       1.9 MiB
   Installed artifact Giflib        154.6 KiB
   Installed artifact XZ            1.5 MiB
   Installed artifact Xorg_xtrans   48.2 KiB
   Installed artifact libwebp       2.6 MiB
   Installed artifact oneTBB        435.6 KiB
   Installed artifact LERC          272.9 KiB
   Installed artifact Libglvnd      833.5 KiB
   Installed artifact libsixel      177.3 KiB
   Installed artifact JpegTurbo     1.4 MiB
   Installed artifact LittleCMS     752.2 KiB
   Installed artifact Libtiff       2.3 MiB
   Installed artifact ImageMagick   9.3 MiB
   Installed artifact Xorg_libX11   13.9 MiB
   Installed artifact Ghostscript   31.4 MiB
    Updating `~/.julia/environments/v1.13/Project.toml`
  [69cbc4a0] + PhysiologyAnalysis v0.6.48
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [47edcb42] + ADTypes v1.18.0
  [621f4979] + AbstractFFTs v1.5.0
  [7d9f7c33] + Accessors v0.1.42
  [79e6a3ab] + Adapt v4.4.0
  [66dad0bd] + AliasTables v1.1.3
  [ec485272] + ArnoldiMethod v0.4.0
  [4fba245c] + ArrayInterface v7.20.0
  [13072b0f] + AxisAlgorithms v1.1.0
  [39de3d68] + AxisArrays v0.4.8
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  [2a0fbf3d] + CPUSummary v0.2.7
  [336ed68f] + CSV v0.10.15
  [aafaddc9] + CatIndices v0.2.2
  [d360d2e6] + ChainRulesCore v1.26.0
  [0b6fb165] + ChunkCodecCore v1.0.0
  [4c0bbee4] + ChunkCodecLibZlib v1.0.0
  [55437552] + ChunkCodecLibZstd v1.0.0
  [fb6a15b2] + CloseOpenIntervals v0.1.13
  [aaaa29a8] + Clustering v0.15.8
  [944b1d66] + CodecZlib v0.7.8
  [35d6a980] + ColorSchemes v3.31.0
  [3da002f7] + ColorTypes v0.12.1
  [c3611d14] + ColorVectorSpace v0.11.0
  [5ae59095] + Colors v0.13.1
  [861a8166] + Combinatorics v1.0.3
  [38540f10] + CommonSolve v0.2.4
  [bbf7d656] + CommonSubexpressions v0.3.1
  [f70d9fcc] + CommonWorldInvalidations v1.0.0
  [34da2185] + Compat v4.18.1
  [a33af91c] + CompositionsBase v0.1.2
  [ed09eef8] + ComputationalResources v0.3.2
  [187b0558] + ConstructionBase v1.6.0
  [150eb455] + CoordinateTransformations v0.6.4
  [adafc99b] + CpuId v0.3.1
  [a8cc5b0e] + Crayons v4.1.1
  [5a033b19] + CurveFit v0.6.1
  [dc8bdbbb] + CustomUnitRanges v1.0.2
⌅ [717857b8] + DSP v0.7.10
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.8.0
⌅ [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [a0c0ee7d] + DifferentiationInterface v0.7.8
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.120
  [ffbed154] + DocStringExtensions v0.9.5
  [da7a9670] + ElectroPhysiology v0.5.50
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  [a2bd30eb] + Graphics v1.1.3
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  [3e5b6fbb] + HostCPUFeatures v0.1.17
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⌃ [787d08f9] + ImageMorphology v0.4.6
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        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 22.66s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
   4621.7 ms  ✓ TestEnv
  1 dependency successfully precompiled in 5 seconds. 27 already precompiled.

Precompiling package dependencies...

======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile.
--trace-compile is enabled during profile collection.
======================================================================================

cmd: /opt/julia/bin/julia 252 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
wait at ./task.jl:1217
wait_forever at ./task.jl:1139
jfptr_wait_forever_33851.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4116 [inlined]
ijl_apply_generic at /source/src/gf.c:4313
jl_apply at /source/src/julia.h:2271 [inlined]
start_task at /source/src/task.c:1281
unknown function (ip: (nil)) at (unknown file)


==============================================================
Profile collected. A report will print at the next yield point.
Disabling --trace-compile
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362
Overhead ╎ [+additional indent] Count File:Line  Function
=========================================================
Thread 1 (default) Task 0x000074f6538784c0 Total snapshots: 450. Utilization: 0%
   ╎450 @Base/task.jl:1139  wait_forever()
449╎ 450 @Base/task.jl:1217  wait()


======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile.
--trace-compile is enabled during profile collection.
======================================================================================

cmd: /opt/julia/bin/julia 1 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
wait at ./task.jl:1217
wait_forever at ./task.jl:1139
jfptr_wait_forever_33851.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4116 [inlined]
ijl_apply_generic at /source/src/gf.c:4313
jl_apply at /source/src/julia.h:2271 [inlined]
start_task at /source/src/task.c:1281
unknown function (ip: (nil)) at (unknown file)


==============================================================
Profile collected. A report will print at the next yield point.
Disabling --trace-compile
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362
Overhead ╎ [+additional indent] Count File:Line  Function
=========================================================
Thread 1 (default) Task 0x00007b6d183e6ef0 Total snapshots: 392. Utilization: 0%
   ╎392 @Base/task.jl:1139  wait_forever()
391╎ 392 @Base/task.jl:1217  wait()


[252] signal 15: Terminated
in expression starting at /PkgEval.jl/scripts/precompile.jl:37
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
wait at ./task.jl:1217
wait_forever at ./task.jl:1139

[1] signal 15: Terminated
in expression starting at /PkgEval.jl/scripts/evaluate.jl:152
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
wait at ./task.jl:1217
wait_forever at ./task.jl:1139
jfptr_wait_forever_33851.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4116 [inlined]
ijl_apply_generic at /source/src/gf.c:4313
jl_apply at /source/src/julia.h:2271 [inlined]
start_task at /source/src/task.c:1281
unknown function (ip: (nil)) at (unknown file)
Allocations: 21439733 (Pool: 21438778; Big: 955); GC: 41
jfptr_wait_forever_33851.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4116 [inlined]
ijl_apply_generic at /source/src/gf.c:4313
jl_apply at /source/src/julia.h:2271 [inlined]
start_task at /source/src/task.c:1281
unknown function (ip: (nil)) at (unknown file)
Allocations: 24065961 (Pool: 24064218; Big: 1743); GC: 64

PkgEval terminated after 2732.87s: test duration exceeded the time limit