Package evaluation of ExactWrightFisher on Julia 1.13.0-DEV.1234 (bbaa34b41d*) started at 2025-10-01T18:08:42.387 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.99s ################################################################################ # Installation # Installing ExactWrightFisher... Resolving package versions... Installed Rmath_jll ─────────────── v0.5.1+0 Installed MacroTools ────────────── v0.5.16 Installed GroupsCore ────────────── v0.4.2 Installed FillArrays ────────────── v1.14.0 Installed DataStructures ────────── v0.19.1 Installed Arb_jll ───────────────── v200.2300.0+0 Installed HypergeometricFunctions ─ v0.3.28 Installed AliasTables ───────────── v1.1.3 Installed DataAPI ───────────────── v1.16.0 Installed OrderedCollections ────── v1.8.1 Installed Statistics ────────────── v1.11.1 Installed StatsBase ─────────────── v0.34.6 Installed ExactWrightFisher ─────── v0.1.11 Installed StatsAPI ──────────────── v1.7.1 Installed OpenSpecFun_jll ───────── v0.5.6+0 Installed ProgressMeter ─────────── v1.11.0 Installed IrrationalConstants ───── v0.2.4 Installed QuadGK ────────────────── v2.11.2 Installed Antic_jll ─────────────── v0.201.500+0 Installed FLINT_jll ─────────────── v200.900.9+0 Installed AbstractAlgebra ───────── v0.35.3 Installed OpenBLAS32_jll ────────── v0.3.29+0 Installed Rmath ─────────────────── v0.8.0 Installed PtrArrays ─────────────── v1.3.0 Installed LogExpFunctions ───────── v0.3.29 Installed StatsFuns ─────────────── v1.5.0 Installed Calcium_jll ───────────── v0.401.100+0 Installed Distributions ─────────── v0.25.120 Installed Reexport ──────────────── v1.2.2 Installed Missings ──────────────── v1.2.0 Installed JLLWrappers ───────────── v1.7.1 Installed Preferences ───────────── v1.5.0 Installed PDMats ────────────────── v0.11.35 Installed SpecialFunctions ──────── v2.5.1 Installed SortingAlgorithms ─────── v1.2.2 Installed Nemo ──────────────────── v0.39.1 Installed DocStringExtensions ───── v0.9.5 Installed RandomExtensions ──────── v0.4.4 Installing 7 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Antic 229.9 KiB Installed artifact Calcium 1.5 MiB Installed artifact Arb 6.1 MiB Installed artifact OpenBLAS32 10.0 MiB Installed artifact FLINT 13.6 MiB Updating `~/.julia/environments/v1.13/Project.toml` [8c1589a6] + ExactWrightFisher v0.1.11 Updating `~/.julia/environments/v1.13/Manifest.toml` ⌅ [c3fe647b] + AbstractAlgebra v0.35.3 [66dad0bd] + AliasTables v1.1.3 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [8c1589a6] + ExactWrightFisher v0.1.11 [1a297f60] + FillArrays v1.14.0 ⌅ [d5909c97] + GroupsCore v0.4.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 ⌅ [2edaba10] + Nemo v0.39.1 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [21216c6a] + Preferences v1.5.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [fb686558] + RandomExtensions v0.4.4 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [e21ec000] + Antic_jll v0.201.500+0 [d9960996] + Arb_jll v200.2300.0+0 [fcfa6d1b] + Calcium_jll v0.401.100+0 ⌅ [e134572f] + FLINT_jll v200.900.9+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [3a97d323] + MPFR_jll v4.2.2+0 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 11.09s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4902.8 ms ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 27 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: ExactWrightFisher Failed to precompile ExactWrightFisher [8c1589a6-e1d0-11e8-3509-29fca4fccf6a] to "/home/pkgeval/.julia/compiled/v1.13/ExactWrightFisher/jl_4uhGcX" (ProcessExited(1)). ERROR: LoadError: InitError: MethodError: no method matching process_backtrace(::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}}) The function `process_backtrace` exists, but no method is defined for this combination of argument types. Closest candidates are: process_backtrace(!Matched::Vector{Any}) @ Base errorshow.jl:1094 process_backtrace(!Matched::Vector{Base.StackTraces.StackFrame}) @ Base errorshow.jl:1089 Stacktrace: [1] __init__() @ Nemo ~/.julia/packages/Nemo/VHAIi/src/Nemo.jl:373 [2] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1413 [3] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1401 [4] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1289 [5] _include_from_serialized @ ./loading.jl:1246 [inlined] [6] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2101 [7] _require_search_from_serialized @ ./loading.jl:1995 [inlined] [8] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2645 [9] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2511 [10] macro expansion @ ./loading.jl:2439 [inlined] [11] macro expansion @ ./lock.jl:376 [inlined] [12] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2403 [13] require @ ./loading.jl:2379 [inlined] [14] eval_import_path @ ./module.jl:36 [inlined] [15] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [16] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [17] top-level scope @ ~/.julia/packages/ExactWrightFisher/gYX8w/src/arb_definitions.jl:1 [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [19] top-level scope @ ~/.julia/packages/ExactWrightFisher/gYX8w/src/ExactWrightFisher.jl:5 [20] include(mod::Module, _path::String) @ Base ./Base.jl:309 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3072 [22] top-level scope @ stdin:5 [23] eval(m::Module, e::Any) @ Core ./boot.jl:489 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2918 [25] include_string @ ./loading.jl:2928 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:342 [27] _start() @ Base ./client.jl:577 during initialization of module Nemo in expression starting at /home/pkgeval/.julia/packages/ExactWrightFisher/gYX8w/src/arb_definitions.jl:1 in expression starting at /home/pkgeval/.julia/packages/ExactWrightFisher/gYX8w/src/ExactWrightFisher.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 188.9s ################################################################################ # Testing # Testing ExactWrightFisher Status `/tmp/jl_nxYwy1/Project.toml` [31c24e10] Distributions v0.25.120 [8c1589a6] ExactWrightFisher v0.1.11 ⌅ [2edaba10] Nemo v0.39.1 [92933f4c] ProgressMeter v1.11.0 [276daf66] SpecialFunctions v2.5.1 [4c63d2b9] StatsFuns v1.5.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_nxYwy1/Manifest.toml` ⌅ [c3fe647b] AbstractAlgebra v0.35.3 [66dad0bd] AliasTables v1.1.3 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.1 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [8c1589a6] ExactWrightFisher v0.1.11 [1a297f60] FillArrays v1.14.0 ⌅ [d5909c97] GroupsCore v0.4.2 [34004b35] HypergeometricFunctions v0.3.28 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 ⌅ [2edaba10] Nemo v0.39.1 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [21216c6a] Preferences v1.5.0 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [fb686558] RandomExtensions v0.4.4 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.8.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.5.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [e21ec000] Antic_jll v0.201.500+0 [d9960996] Arb_jll v200.2300.0+0 [fcfa6d1b] Calcium_jll v0.401.100+0 ⌅ [e134572f] FLINT_jll v200.900.9+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [3a97d323] MPFR_jll v4.2.2+0 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.2+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Testing... ERROR: LoadError: The following 1 direct dependency failed to precompile: ExactWrightFisher Failed to precompile ExactWrightFisher [8c1589a6-e1d0-11e8-3509-29fca4fccf6a] to "/home/pkgeval/.julia/compiled/v1.13/ExactWrightFisher/jl_m8E6lm" (ProcessExited(1)). ERROR: LoadError: InitError: MethodError: no method matching process_backtrace(::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}}) The function `process_backtrace` exists, but no method is defined for this combination of argument types. Closest candidates are: process_backtrace(!Matched::Vector{Any}) @ Base errorshow.jl:1094 process_backtrace(!Matched::Vector{Base.StackTraces.StackFrame}) @ Base errorshow.jl:1089 Stacktrace: [1] __init__() @ Nemo ~/.julia/packages/Nemo/VHAIi/src/Nemo.jl:373 [2] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1413 [3] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1401 [4] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1289 [5] _include_from_serialized @ ./loading.jl:1246 [inlined] [6] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2101 [7] _require_search_from_serialized @ ./loading.jl:1995 [inlined] [8] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2645 [9] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2511 [10] macro expansion @ ./loading.jl:2439 [inlined] [11] macro expansion @ ./lock.jl:376 [inlined] [12] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2403 [13] require @ ./loading.jl:2379 [inlined] [14] eval_import_path @ ./module.jl:36 [inlined] [15] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [16] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [17] top-level scope @ ~/.julia/packages/ExactWrightFisher/gYX8w/src/arb_definitions.jl:1 [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [19] top-level scope @ ~/.julia/packages/ExactWrightFisher/gYX8w/src/ExactWrightFisher.jl:5 [20] include(mod::Module, _path::String) @ Base ./Base.jl:309 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3072 [22] top-level scope @ stdin:5 [23] eval(m::Module, e::Any) @ Core ./boot.jl:489 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2918 [25] include_string @ ./loading.jl:2928 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:342 [27] _start() @ Base ./client.jl:577 during initialization of module Nemo in expression starting at /home/pkgeval/.julia/packages/ExactWrightFisher/gYX8w/src/arb_definitions.jl:1 in expression starting at /home/pkgeval/.julia/packages/ExactWrightFisher/gYX8w/src/ExactWrightFisher.jl:1 in expression starting at stdin: in expression starting at /home/pkgeval/.julia/packages/ExactWrightFisher/gYX8w/test/runtests.jl:4 Testing failed after 24.88s ERROR: LoadError: Package ExactWrightFisher errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2673 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2522 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 252.63s: package fails to precompile