Package evaluation of CrystalNets on Julia 1.12.0-rc3 (7522b24014*) started at 2025-10-01T16:54:35.139 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.37s ################################################################################ # Installation # Installing CrystalNets... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [7952bbbe] + CrystalNets v1.1.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [c7e460c6] + ArgParse v1.2.0 [ec485272] + ArnoldiMethod v0.4.0 [a963bdd2] + AtomsBase v0.5.1 [46823bd8] + Chemfiles v0.10.43 [7952bbbe] + CrystalNets v1.1.0 [864edb3b] + DataStructures v0.19.1 [ffbed154] + DocStringExtensions v0.9.5 [86223c79] + Graphs v1.13.1 [d25df0c9] + Inflate v0.1.5 [692b3bcd] + JLLWrappers v1.7.1 [1914dd2f] + MacroTools v0.5.16 [bac558e1] + OrderedCollections v1.8.1 [f305370e] + PeriodicGraphEmbeddings v0.3.3 [72a2d4b8] + PeriodicGraphEquilibriumPlacement v0.2.2 [18c5b727] + PeriodicGraphs v0.10.4 [7b2266bf] + PeriodicTable v1.2.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [92933f4c] + ProgressMeter v1.11.0 [ae029012] + Requires v1.3.1 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [b718987f] + TextWrap v1.0.2 [0796e94c] + Tokenize v0.5.29 [1986cc42] + Unitful v1.25.0 [a7773ee8] + UnitfulAtomic v1.0.0 [78a364fa] + Chemfiles_jll v0.10.4+0 [ac4a9f1e] + spglib_jll v2.6.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+1 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Installation completed after 5.68s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 408.66s ################################################################################ # Testing # Testing CrystalNets Status `/tmp/jl_HWqCV2/Project.toml` [861a8166] Combinatorics v1.0.3 [7952bbbe] CrystalNets v1.1.0 [86223c79] Graphs v1.13.1 [18c5b727] PeriodicGraphs v0.10.4 [90137ffa] StaticArrays v1.9.15 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_HWqCV2/Manifest.toml` [c7e460c6] ArgParse v1.2.0 [ec485272] ArnoldiMethod v0.4.0 [a963bdd2] AtomsBase v0.5.1 [46823bd8] Chemfiles v0.10.43 [861a8166] Combinatorics v1.0.3 [7952bbbe] CrystalNets v1.1.0 [864edb3b] DataStructures v0.19.1 [ffbed154] DocStringExtensions v0.9.5 [86223c79] Graphs v1.13.1 [d25df0c9] Inflate v0.1.5 [692b3bcd] JLLWrappers v1.7.1 [1914dd2f] MacroTools v0.5.16 [bac558e1] OrderedCollections v1.8.1 [f305370e] PeriodicGraphEmbeddings v0.3.3 [72a2d4b8] PeriodicGraphEquilibriumPlacement v0.2.2 [18c5b727] PeriodicGraphs v0.10.4 [7b2266bf] PeriodicTable v1.2.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [92933f4c] ProgressMeter v1.11.0 [ae029012] Requires v1.3.1 [699a6c99] SimpleTraits v0.9.5 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [b718987f] TextWrap v1.0.2 [0796e94c] Tokenize v0.5.29 [1986cc42] Unitful v1.25.0 [a7773ee8] UnitfulAtomic v1.0.0 [78a364fa] Chemfiles_jll v0.10.4+0 [ac4a9f1e] spglib_jll v2.6.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.1+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+1 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Testing Running tests... The following warning about altering performance, the two messages on warning toggling and the three error statements are expected. [ Warning: Warnings may critically alter performance for this operation and were turned off. [ Info: Use CrystalNets.toggle_warning(false) or the --no-warn option to remove this warning [ Info: Use the force_warn option to force printing warnings [ Error: Very suspicious connectivity found for MIL-100. [ Error: Atom ?, used in a bond, has either zero or multiple placements in CIF file MIL-101. This invalidates all bonds from the file, which will thus be discarded. [ Error: Atom ?, used in a bond, has either zero or multiple placements in CIF file MIL-53. This invalidates all bonds from the file, which will thus be discarded. The following warning about symmetry and the three warnings about 0-dimensional structures are expected. [ Warning: Missing _symmetry_equiv_pos_as_xyz and _space_group_symop_operation_xyz fields, will rely on other symmetry indications. [ Warning: Detected 192 structures of dimension 0 in NOTT-112, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Detected 40 structures of dimension 0 in FOWWAR, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Detected 2 structures of dimension 0 in CALFIG, possibly complex solvent residues. They will be ignored for topology computation. The following @error about carbon cycle disorder is expected. [ Info: Initial pass found C with invalid number of bonds. [ Error: Found what looks like a disordered carbon ring for CIZPOS: use of disordered input is not advised, please double-check the detected topology or provide a clean input. [ Warning: This CIF file contains multiple colliding atoms. Only one atom will be kept per site. [ Warning: Cu atoms suspiciously close to one another(bond length: 0.5503737600000008). One will be removed. [ Info: Initial pass found N, O and C with invalid number of bonds. [ Error: Found what looks like a disordered carbon ring for c8ce00653a2: use of disordered input is not advised, please double-check the detected topology or provide a clean input. [ Warning: Detected 5 structures of dimension 0 in c8ce00653a2, possibly complex solvent residues. They will be ignored for topology computation. [ Info: Initial pass found O and C with invalid number of bonds. Test Summary: | Pass Broken Total Time MOF examples | 74 3 77 18m10.0s [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. [ Warning: Detected 6 structures of dimension 0 in Clathrate_hydrate, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. [ Warning: Detected 6 structures of dimension 0 in Clathrate_hydrate, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Missing _symmetry_equiv_pos_as_xyz and _space_group_symop_operation_xyz fields, will rely on other symmetry indications. [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. Test Summary: | Pass Total Time Other kinds of structures | 3 3 1.0s [ Info: Checking that all known topologies are recognized (this can take a few minutes). [ Info: Use multiple threads to reduce this time Test Summary: | Pass Total Time Archive | 17494 17494 10m37.2s [ Info: Testing pcu [ Info: Testing afy, AFY [ Info: Testing apc, APC [ Info: Testing bam [ Info: Testing bcf [ Info: Testing cdp [ Info: Testing cnd [ Info: Testing ecb [ Info: Testing fiv [ Info: Testing ftd [ Info: Testing ftj [ Info: Testing ins [ Info: Testing kgt [ Info: Testing mot [ Info: Testing moz [ Info: Testing muh [ Info: Testing pbz [ Info: Testing qom [ Info: Testing sig [ Info: Testing sma [ Info: Testing sod-f [ Info: Testing sod-h [ Info: Testing utj [ Info: Testing utp [ Info: Testing nts [ Info: Testing lth [ Info: Testing cys [ Info: Testing llw-z [ Info: Testing nts Test Summary: | Pass Total Time Module | 31 31 1m00.7s Test Summary: | Pass Broken Total Time Executable | 29 1 30 10.2s 1 / 36 .................................................................................................... 2 / 36 .................................................................................................... 3 / 36 .................................................................................................... 4 / 36 .................................................................................................... 5 / 36 .................................................................................................... 6 / 36 .................................................................................................... 7 / 36 .................................................................................................... 8 / 36 .................................................................................................... 9 / 36 .................................................................................................... 10 / 36 .................................................................................................... 11 / 36 .................................................................................................... 12 / 36 .................................................................................................... 13 / 36 .................................................................................................... 14 / 36 .................................................................................................... 15 / 36 .................................................................................................... 16 / 36 .................................................................................................... 17 / 36 .................................................................................................... 18 / 36 .................................................. 19 / 36 .................................................. 20 / 36 .................................................. 21 / 36 .................................................. 22 / 36 .................................................. 23 / 36 .................................................. 24 / 36 .................................................. 25 / 36 .................................................. 26 / 36 .................................................. 27 / 36 .................................................. 28 / 36 .................................................. 29 / 36 .................................................. 30 / 36 .................................................. 31 / 36 .................................................. 32 / 36 ..... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 23 running 1 of 1 signal (10): User defined signal 1 _setindex! at ./array.jl:990 [inlined] setindex! at ./array.jl:986 [inlined] _sort! at ./sort.jl:851 _sort! at ./sort.jl:800 _sort! at ./sort.jl:747 [inlined] _sort! at ./sort.jl:686 [inlined] _sort! at ./sort.jl:561 [inlined] _sort! at ./sort.jl:1594 [inlined] #sort!#23 at ./sort.jl:1740 [inlined] sort! at ./sort.jl:1733 [inlined] translation_to_direct_map at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/minimization.jl:707 find_first_valid_translation_unstable at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/minimization.jl:809 minimize_unstable at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/minimization.jl:287 [inlined] minimize at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/minimization.jl:274 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/query.jl:34 unknown function (ip: 0x7c12ac3de912) at (unknown file) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/query.jl:153 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/query.jl:87 [inlined] #topological_genome#221 at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/query.jl:90 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/query.jl:90 unknown function (ip: 0x7c1293706bfc) at (unknown file) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2387 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2843 _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 _include at ./loading.jl:2903 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_91637.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2387 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_97682.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2387 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7c12dfd0d249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#398 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 jfptr_wait_91376.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2445 unknown function (ip: 0x709d21185c03) at (unknown file) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 #204 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2385 withenv at ./env.jl:265 #189 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2204 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2062 #185 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2171 #mktempdir#21 at ./file.jl:899 unknown function (ip: 0x709d21172e6c) at (unknown file) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 mktempdir at ./file.jl:895 mktempdir at ./file.jl:895 #sandbox#181 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2118 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2110 unknown function (ip: 0x709d211713b1) at (unknown file) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 #test#192 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2370 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2280 [inlined] #test#170 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:483 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:462 unknown function (ip: 0x709d21170fe1) at (unknown file) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 unknown function (ip: 0x709d211697b0) at (unknown file) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:153 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 unknown function (ip: 0x709d2116641f) at (unknown file) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2387 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2843 _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 _include at ./loading.jl:2903 include at ./Base.jl:306 exec_options at ./client.jl:317 _start at ./client.jl:550 jfptr__start_97682.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2387 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x709d3d392249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000709d231fc010 Total snapshots: 325. Utilization: 0% ╎325 @Base/client.jl:550 _start() ╎ 325 @Base/client.jl:317 exec_options(opts::Base.JLOptions) ╎ 325 @Base/Base.jl:306 include(mod::Module, _path::String) ╎ 325 @Base/loading.jl:2903 _include(mapexpr::Function, mod::Module, _pat… ╎ 325 @Base/loading.jl:2843 include_string(mapexpr::typeof(identity), mo… ╎ 325 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 325 @Pkg/src/API.jl:151 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 325 @Pkg/src/API.jl:151 #test#81 ╎ ╎ 325 @Pkg/src/API.jl:152 test ╎ ╎ 325 @Pkg/src/API.jl:152 test(pkgs::Vector{String}; kwargs::Base.P… ╎ ╎ 325 @Pkg/src/API.jl:153 kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 325 @Pkg/src/API.jl:164 test(pkgs::Vector{PackageSpec}; io::IOC… ╎ ╎ ╎ 325 @Pkg/src/API.jl:462 kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 325 @Pkg/src/API.jl:483 test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 325 @Pkg/…erations.jl:2280 test ╎ ╎ ╎ 325 @Pkg/…erations.jl:2370 test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 325 @Pkg/…rations.jl:2110 kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 325 @Pkg/…rations.jl:2118 #sandbox#181 ╎ ╎ ╎ ╎ 325 @Base/file.jl:895 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 325 @Base/file.jl:895 mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 325 @Base/file.jl:899 mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 325 @Pkg/…tions.jl:2171 (::Pkg.Operations.var"#185#18… ╎ ╎ ╎ ╎ ╎ 325 @Pkg/…tions.jl:2062 with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 325 @Pkg/…tions.jl:2204 (::Pkg.Operations.var"#189#… ╎ ╎ ╎ ╎ ╎ 325 @Base/env.jl:265 withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 325 @Pkg/…ions.jl:2385 (::Pkg.Operations.var"#204… ╎ ╎ ╎ ╎ ╎ ╎ 325 @Pkg/…ons.jl:2445 subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 325 @Base/…ss.jl:687 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 325 @Base/…ss.jl:694 wait(x::Base.Process, syn… ╎ ╎ ╎ ╎ ╎ ╎ 325 @Base/…on.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 325 @Base/…on.jl:141 wait(c::Base.GenericCon… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 325 @Base/…sk.jl:1199 wait() 324╎ ╎ ╎ ╎ ╎ ╎ ╎ 325 @Base/…sk.jl:1187 poptask(W::Base.Intr… ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007c12c59fc010 Total snapshots: 183. Utilization: 100% ╎183 @Base/client.jl:550 _start() ╎ 183 @Base/client.jl:283 exec_options(opts::Base.JLOptions) ╎ 183 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ 183 @Base/Base.jl:308 (::Base.IncludeInto)(fname::String) ╎ 183 @Base/Base.jl:307 include(mapexpr::Function, mod::Module, _path::St… ╎ 183 @Base/loading.jl:2903 _include(mapexpr::Function, mod::Module, _pa… ╎ ╎ 183 @Base/loading.jl:2843 include_string(mapexpr::typeof(identity), m… ╎ ╎ 183 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 183 @CrystalNets/…uery.jl:90 topological_genome(g::PeriodicGraph2D) ╎ ╎ 183 @CrystalNets/…ery.jl:90 #topological_genome#221 ╎ ╎ 183 @CrystalNets/…ery.jl:87 topological_genome ╎ ╎ ╎ 183 @CrystalNets/…ry.jl:153 topological_genome(group::Underlying… ╎ ╎ ╎ 183 @CrystalNets/…ry.jl:34 topological_genome(net::CrystalNet2D… ╎ ╎ ╎ 183 @CrystalNets/…n.jl:274 minimize ╎ ╎ ╎ 183 @CrystalNets/…n.jl:287 minimize_unstable ╎ ╎ ╎ 183 @CrystalNets/…n.jl:809 find_first_valid_translation_unst… ╎ ╎ ╎ ╎ 111 @CrystalNets/….jl:677 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 12 @Base/task.jl:1053 yield() 1╎ ╎ ╎ ╎ 1 @Base/task.jl:939 enq_work(t::Task) 1╎ ╎ ╎ ╎ 8 @Base/task.jl:960 enq_work(t::Task) 1╎ ╎ ╎ ╎ 1 @Base/gcutils.jl:0 workqueue_for(tid::Int64) 1╎ ╎ ╎ ╎ 2 @Base/task.jl:870 push!(W::Base.IntrusiveLinkedListS… 1╎ ╎ ╎ ╎ 1 @Base/…d_list.jl:53 push! ╎ ╎ ╎ ╎ 2 @Base/task.jl:872 push!(W::Base.IntrusiveLinkedListS… ╎ ╎ ╎ ╎ 2 @Base/…cks-mt.jl:65 unlock 2╎ ╎ ╎ ╎ ╎ 2 @Base/…otion.jl:637 == 2╎ ╎ ╎ ╎ 2 @Base/task.jl:917 workqueue_for(tid::Int64) 1╎ ╎ ╎ ╎ 1 @Base/task.jl:976 enq_work(t::Task) 1╎ ╎ ╎ ╎ 1 @Base/task.jl:867 push!(W::Base.IntrusiveLinkedListSy… 2╎ ╎ ╎ ╎ 2 @Base/task.jl:1054 yield() 1╎ ╎ ╎ ╎ 97 @Base/task.jl:1055 yield() ╎ ╎ ╎ ╎ 2 @Base/task.jl:1198 wait() 1╎ ╎ ╎ ╎ 1 @Base/gcutils.jl:0 workqueue_for(tid::Int64) ╎ ╎ ╎ ╎ 1 @Base/task.jl:918 workqueue_for(tid::Int64) ╎ ╎ ╎ ╎ 1 @Base/array.jl:249 isassigned 1╎ ╎ ╎ ╎ ╎ 1 @Base/…mpiler.jl:54 getproperty ╎ ╎ ╎ ╎ 9 @Base/task.jl:1199 wait() ╎ ╎ ╎ ╎ 8 @Base/task.jl:1185 poptask(W::Base.IntrusiveLinkedLi… 1╎ ╎ ╎ ╎ 1 @Base/task.jl:893 popfirst!(W::Base.IntrusiveLinked… 1╎ ╎ ╎ ╎ 1 @Base/task.jl:0 trypoptask(W::Base.IntrusiveLinkedL… ╎ ╎ ╎ ╎ 6 @Base/task.jl:1167 trypoptask(W::Base.IntrusiveLink… 1╎ ╎ ╎ ╎ ╎ 3 @Base/task.jl:894 popfirst!(W::Base.IntrusiveLinke… ╎ ╎ ╎ ╎ ╎ 2 @Base/…ks-mt.jl:43 lock(l::Base.Threads.SpinLock) ╎ ╎ ╎ ╎ ╎ 1 @Base/…ks-mt.jl:54 trylock 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tils.jl:166 disable_finalizers ╎ ╎ ╎ ╎ ╎ 1 @Base/…ks-mt.jl:56 trylock 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tion.jl:637 == ╎ ╎ ╎ ╎ ╎ 3 @Base/task.jl:898 popfirst!(W::Base.IntrusiveLinke… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…utils.jl:0 unlock ╎ ╎ ╎ ╎ ╎ 2 @Base/…ks-mt.jl:65 unlock 2╎ ╎ ╎ ╎ ╎ 2 @Base/…tion.jl:637 == 1╎ ╎ ╎ ╎ 1 @Base/task.jl:1165 trypoptask(W::Base.IntrusiveLinke… ╎ ╎ ╎ ╎ 6 @Base/task.jl:1200 wait() 1╎ ╎ ╎ ╎ 1 @Base/task.jl:1112 try_yieldto(undo::typeof(Base.ens… 1╎ ╎ ╎ ╎ 1 @Base/task.jl:1113 try_yieldto(undo::typeof(Base.ens… 4╎ ╎ ╎ ╎ 4 @Base/task.jl:1114 try_yieldto(undo::typeof(Base.ens… ╎ ╎ ╎ ╎ 79 @Base/task.jl:1201 wait() 78╎ ╎ ╎ ╎ 79 @Base/libuv.jl:133 process_events ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:681 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 1 @Base/…entials.jl:920 getindex ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:682 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:81 getindex 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:920 getindex ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:692 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @Graphs/…/core.jl:160 degree ╎ ╎ ╎ ╎ 1 @Graphs/…core.jl:118 outdegree ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:58 outneighbors 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:920 getindex ╎ ╎ ╎ ╎ 31 @CrystalNets/….jl:699 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 1 @Base/array.jl:0 collect(itr::Base.Generator{Vector{Pe… ╎ ╎ ╎ ╎ 2 @Base/array.jl:790 collect(itr::Base.Generator{Vector{… ╎ ╎ ╎ ╎ 1 @Base/…nerator.jl:45 iterate ╎ ╎ ╎ ╎ 1 @Base/array.jl:901 iterate ╎ ╎ ╎ ╎ 1 @Base/array.jl:901 iterate 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:920 getindex ╎ ╎ ╎ ╎ 1 @Base/…nerator.jl:48 iterate ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:702 #translation_to_direct_map##0 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:920 getindex ╎ ╎ ╎ ╎ 21 @Base/array.jl:795 collect(itr::Base.Generator{Vector{… ╎ ╎ ╎ ╎ 21 @Base/array.jl:670 _array_for ╎ ╎ ╎ ╎ 21 @Base/…tarray.jl:866 similar ╎ ╎ ╎ ╎ 21 @Base/…tarray.jl:867 similar ╎ ╎ ╎ ╎ ╎ 21 @Base/boot.jl:660 Array ╎ ╎ ╎ ╎ ╎ 13 @Base/boot.jl:647 Array 13╎ ╎ ╎ ╎ ╎ 13 @Base/boot.jl:588 GenericMemory 8╎ ╎ ╎ ╎ ╎ 8 @Base/boot.jl:648 Array ╎ ╎ ╎ ╎ 6 @Base/array.jl:800 collect(itr::Base.Generator{Vector{… ╎ ╎ ╎ ╎ 6 @Base/array.jl:826 collect_to_with_first! ╎ ╎ ╎ ╎ 6 @Base/array.jl:848 collect_to! 1╎ ╎ ╎ ╎ 1 @Base/…erator.jl:0 iterate ╎ ╎ ╎ ╎ 2 @Base/…erator.jl:45 iterate ╎ ╎ ╎ ╎ ╎ 2 @Base/array.jl:901 iterate 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:0 getindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:920 getindex ╎ ╎ ╎ ╎ 3 @Base/…erator.jl:48 iterate ╎ ╎ ╎ ╎ ╎ 1 @CrystalNets/…l:700 #translation_to_direct_map##0 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:0 getindex ╎ ╎ ╎ ╎ ╎ 1 @CrystalNets/…l:702 #translation_to_direct_map##0 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:920 getindex ╎ ╎ ╎ ╎ ╎ 1 @CrystalNets/…l:703 #translation_to_direct_map##0 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:920 getindex 1╎ ╎ ╎ ╎ 1 @Base/…entials.jl:0 collect(itr::Base.Generator{Vector… ╎ ╎ ╎ ╎ 11 @CrystalNets/….jl:707 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 11 @Base/sort.jl:1733 sort! ╎ ╎ ╎ ╎ 11 @Base/sort.jl:1740 #sort!#23 ╎ ╎ ╎ ╎ 11 @Base/sort.jl:1594 _sort! ╎ ╎ ╎ ╎ 11 @Base/sort.jl:561 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:654 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:489 _hi ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:426 lastindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:389 eachindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:137 axes1 ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:98 axes 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:194 size ╎ ╎ ╎ ╎ ╎ 10 @Base/sort.jl:686 _sort! ╎ ╎ ╎ ╎ ╎ 10 @Base/sort.jl:747 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:799 _sort!(v::Vector{PeriodicVerte… 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:86 - ╎ ╎ ╎ ╎ ╎ 8 @Base/sort.jl:800 _sort!(v::Vector{PeriodicVerte… ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:839 _sort!(v::Vector{PeriodicVert… 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:87 + ╎ ╎ ╎ ╎ ╎ 3 @Base/sort.jl:840 _sort!(v::Vector{PeriodicVert… 3╎ ╎ ╎ ╎ ╎ 3 @Base/range.jl:917 iterate ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:843 _sort!(v::Vector{PeriodicVert… ╎ ╎ ╎ ╎ ╎ 1 @Base/…tors.jl:425 > 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:83 < ╎ ╎ ╎ ╎ ╎ 2 @Base/sort.jl:844 _sort!(v::Vector{PeriodicVert… 1╎ ╎ ╎ ╎ ╎ 2 @Base/…ials.jl:919 getindex 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:11 length ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:845 _sort!(v::Vector{PeriodicVert… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ring.jl:120 lt ╎ ╎ ╎ ╎ ╎ ╎ 1 @CrystalNets/…:707 #translation_to_direct_map… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:86 - 1╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:837 _sort!(v::Vector{PeriodicVerte… ╎ ╎ ╎ ╎ 11 @CrystalNets/….jl:709 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 11 @Base/bitarray.jl:403 falses ╎ ╎ ╎ ╎ 11 @Base/…tarray.jl:405 falses 1╎ ╎ ╎ ╎ 1 @Base/array.jl:0 fill!(B::BitVector, x::Bool) ╎ ╎ ╎ ╎ 9 @Base/…tarray.jl:71 BitArray ╎ ╎ ╎ ╎ 7 @Base/…tarray.jl:37 BitArray ╎ ╎ ╎ ╎ ╎ 3 @Base/boot.jl:647 Array 3╎ ╎ ╎ ╎ ╎ 3 @Base/boot.jl:588 GenericMemory 4╎ ╎ ╎ ╎ ╎ 4 @Base/boot.jl:648 Array 2╎ ╎ ╎ ╎ 2 @Base/…tarray.jl:39 BitArray 1╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:377 fill!(B::BitVector, x::Bool) 1╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:714 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 3 @CrystalNets/….jl:715 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 2 @Base/bitarray.jl:682 getindex ╎ ╎ ╎ ╎ 2 @Base/…tarray.jl:676 unsafe_bitgetindex 2╎ ╎ ╎ ╎ 2 @Base/…ntials.jl:920 getindex ╎ ╎ ╎ ╎ 4 @CrystalNets/….jl:726 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:596 backtrack_to!(vmapprogress::Vect… ╎ ╎ ╎ ╎ 3 @CrystalNets/….jl:597 backtrack_to!(vmapprogress::Vect… 1╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:0 attribute_next_available_modify!(v… ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:565 attribute_next_available_modify!… ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:426 lastindex ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:389 eachindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:137 axes1 ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:98 axes ╎ ╎ ╎ ╎ ╎ 1 @Base/range.jl:683 size ╎ ╎ ╎ ╎ ╎ 1 @Base/range.jl:776 length 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:86 - ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:569 attribute_next_available_modify!… ╎ ╎ ╎ ╎ 1 @Base/array.jl:2441 findfirst 1╎ ╎ ╎ ╎ 1 @Base/array.jl:2391 findnext ╎ ╎ ╎ ╎ 4 @CrystalNets/….jl:730 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 4 @Base/bitarray.jl:403 falses ╎ ╎ ╎ ╎ 4 @Base/…tarray.jl:405 falses 1╎ ╎ ╎ ╎ 1 @Base/array.jl:0 fill!(B::BitVector, x::Bool) ╎ ╎ ╎ ╎ 3 @Base/…tarray.jl:71 BitArray ╎ ╎ ╎ ╎ 3 @Base/…tarray.jl:37 BitArray ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:647 Array 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:588 GenericMemory 2╎ ╎ ╎ ╎ ╎ 2 @Base/boot.jl:648 Array ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:732 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @Base/…erators.jl:196 iterate ╎ ╎ ╎ ╎ 1 @Base/…rators.jl:197 iterate ╎ ╎ ╎ ╎ 1 @Base/array.jl:901 iterate ╎ ╎ ╎ ╎ 1 @Base/array.jl:901 iterate 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:920 getindex ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:733 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @Base/bitarray.jl:682 getindex ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:676 unsafe_bitgetindex 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:920 getindex ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:742 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @Base/bitarray.jl:681 getindex 1╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:699 checkbounds ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:743 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 1 @Base/…entials.jl:920 getindex [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#398 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:332 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_50938.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2387 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 23331086 (Pool: 23330512; Big: 574); GC: 22 [23] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/test/runtests.jl:415 uv__update_time at /workspace/srcdir/libuv/src/unix/internal.h:374 uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1410 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_process_events at /source/src/jl_uv.c:394 process_events at ./libuv.jl:133 [inlined] wait at ./task.jl:1201 yield at ./task.jl:1055 translation_to_direct_map at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/minimization.jl:677 find_first_valid_translation_unstable at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/minimization.jl:809 minimize_unstable at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/minimization.jl:287 [inlined] minimize at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/minimization.jl:274 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/query.jl:34 unknown function (ip: 0x7c12ac3de912) at (unknown file) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/query.jl:153 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/query.jl:87 [inlined] #topological_genome#221 at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/query.jl:90 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/query.jl:90 unknown function (ip: 0x7c1293706bfc) at (unknown file) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2387 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2843 _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 _include at ./loading.jl:2903 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_91637.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2387 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_97682.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2387 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7c12dfd0d249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 1637469297 (Pool: 1637466080; Big: 3217); GC: 632 PkgEval terminated after 2722.66s: test duration exceeded the time limit