Package evaluation of CBFV on Julia 1.13.0-DEV.1234 (bbaa34b41d*) started at 2025-10-01T17:02:39.868


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 11.37s


################################################################################
# Installation
#

Installing CBFV...
   Resolving package versions...
   Installed FilePathsBase ─────────────── v0.9.24
   Installed CodecZlib ─────────────────── v0.7.8
   Installed InlineStrings ─────────────── v1.4.5
   Installed Compat ────────────────────── v4.18.1
   Installed OrderedCollections ────────── v1.8.1
   Installed DataStructures ────────────── v0.19.1
   Installed TranscodingStreams ────────── v0.11.3
   Installed IteratorInterfaceExtensions ─ v1.0.0
   Installed DataValueInterfaces ───────── v1.0.0
   Installed InvertedIndices ───────────── v1.3.1
   Installed DataAPI ───────────────────── v1.16.0
   Installed Statistics ────────────────── v1.11.1
   Installed SentinelArrays ────────────── v1.4.8
   Installed PrecompileTools ───────────── v1.3.3
   Installed Tables ────────────────────── v1.12.1
   Installed StringManipulation ────────── v0.4.1
   Installed Reexport ──────────────────── v1.2.2
   Installed Parsers ───────────────────── v2.8.3
   Installed PrettyTables ──────────────── v3.0.11
   Installed DataFrames ────────────────── v1.8.0
   Installed Missings ──────────────────── v1.2.0
   Installed PooledArrays ──────────────── v1.4.3
   Installed WeakRefStrings ────────────── v1.4.2
   Installed Preferences ───────────────── v1.5.0
   Installed TableTraits ───────────────── v1.0.1
   Installed LaTeXStrings ──────────────── v1.4.0
   Installed Crayons ───────────────────── v4.1.1
   Installed WorkerUtilities ───────────── v1.6.1
   Installed SortingAlgorithms ─────────── v1.2.2
   Installed ProgressBars ──────────────── v1.5.1
   Installed CSV ───────────────────────── v0.10.15
   Installed CBFV ──────────────────────── v0.1.0
    Updating `~/.julia/environments/v1.13/Project.toml`
  [e079e57c] + CBFV v0.1.0
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [e079e57c] + CBFV v0.1.0
  [336ed68f] + CSV v0.10.15
  [944b1d66] + CodecZlib v0.7.8
  [34da2185] + Compat v4.18.1
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.8.0
  [864edb3b] + DataStructures v0.19.1
  [e2d170a0] + DataValueInterfaces v1.0.0
  [48062228] + FilePathsBase v0.9.24
  [842dd82b] + InlineStrings v1.4.5
  [41ab1584] + InvertedIndices v1.3.1
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [b964fa9f] + LaTeXStrings v1.4.0
  [e1d29d7a] + Missings v1.2.0
  [bac558e1] + OrderedCollections v1.8.1
  [69de0a69] + Parsers v2.8.3
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [08abe8d2] + PrettyTables v3.0.11
  [49802e3a] + ProgressBars v1.5.1
  [189a3867] + Reexport v1.2.2
  [91c51154] + SentinelArrays v1.4.8
  [a2af1166] + SortingAlgorithms v1.2.2
  [10745b16] + Statistics v1.11.1
  [892a3eda] + StringManipulation v0.4.1
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [3bb67fe8] + TranscodingStreams v0.11.3
  [ea10d353] + WeakRefStrings v1.4.2
  [76eceee3] + WorkerUtilities v1.6.1
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [6462fe0b] + Sockets v1.11.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.13.1+0

Installation completed after 6.63s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
   5200.7 ms  ✓ TestEnv
  1 dependency successfully precompiled in 6 seconds. 27 already precompiled.

Precompiling package dependencies...

Precompilation completed after 254.8s


################################################################################
# Testing
#

     Testing CBFV
      Status `/tmp/jl_RiLVPM/Project.toml`
  [e079e57c] CBFV v0.1.0
  [336ed68f] CSV v0.10.15
  [a93c6f00] DataFrames v1.8.0
  [49802e3a] ProgressBars v1.5.1
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_RiLVPM/Manifest.toml`
  [e079e57c] CBFV v0.1.0
  [336ed68f] CSV v0.10.15
  [944b1d66] CodecZlib v0.7.8
  [34da2185] Compat v4.18.1
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.8.0
  [864edb3b] DataStructures v0.19.1
  [e2d170a0] DataValueInterfaces v1.0.0
  [48062228] FilePathsBase v0.9.24
  [842dd82b] InlineStrings v1.4.5
  [41ab1584] InvertedIndices v1.3.1
  [82899510] IteratorInterfaceExtensions v1.0.0
  [b964fa9f] LaTeXStrings v1.4.0
  [e1d29d7a] Missings v1.2.0
  [bac558e1] OrderedCollections v1.8.1
  [69de0a69] Parsers v2.8.3
  [2dfb63ee] PooledArrays v1.4.3
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.0
  [08abe8d2] PrettyTables v3.0.11
  [49802e3a] ProgressBars v1.5.1
  [189a3867] Reexport v1.2.2
  [91c51154] SentinelArrays v1.4.8
  [a2af1166] SortingAlgorithms v1.2.2
  [10745b16] Statistics v1.11.1
  [892a3eda] StringManipulation v0.4.1
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [3bb67fe8] TranscodingStreams v0.11.3
  [ea10d353] WeakRefStrings v1.4.2
  [76eceee3] WorkerUtilities v1.6.1
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [de0858da] Printf v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] OpenBLAS_jll v0.3.29+0
  [83775a58] Zlib_jll v1.3.1+2
  [8e850b90] libblastrampoline_jll v5.13.1+0
     Testing Running tests...
WARNING: Method definition generatefeatures(DataFrames.DataFrame) in module CBFV at /home/pkgeval/.julia/packages/CBFV/5al6F/src/Featurization.jl:197 overwritten at /home/pkgeval/.julia/packages/CBFV/5al6F/src/Featurization.jl:243.
ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
WARNING: Method definition generatefeatures(DataFrames.DataFrame) in module CBFV at /home/pkgeval/.julia/packages/CBFV/5al6F/src/Featurization.jl:197 overwritten at /home/pkgeval/.julia/packages/CBFV/5al6F/src/Featurization.jl:243.
WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(CBFV.generatefeatures), DataFrames.DataFrame) in module CBFV at /home/pkgeval/.julia/packages/CBFV/5al6F/src/Featurization.jl:197 overwritten at /home/pkgeval/.julia/packages/CBFV/5al6F/src/Featurization.jl:243.

Composition.jl functions: Test Failed at /home/pkgeval/.julia/packages/CBFV/5al6F/test/runtests.jl:58
  Expression: correct == output
   Evaluated: (["Y", "C", "N"], [0.03571428571428571, 0.9523809523809523, 0.011904761904761904]) == (["Y", "N", "C"], [0.03571428571428571, 0.011904761904761904, 0.9523809523809523])
  Stacktrace:
   [1] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:751 [inlined]
   [2] macro expansion
     @ ~/.julia/packages/CBFV/5al6F/test/runtests.jl:58 [inlined]
   [3] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1952 [inlined]
   [4] macro expansion
     @ ~/.julia/packages/CBFV/5al6F/test/runtests.jl:45 [inlined]
   [5] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1952 [inlined]
   [6] top-level scope
     @ ~/.julia/packages/CBFV/5al6F/test/runtests.jl:7

0.0%┣                                                ┫ 0/3 [00:00<00:00, -0s/it]

Preparing input data... 33.3%┣██████▍            ┫ 1/3 [00:02<Inf:Inf, InfGs/it]

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Preparing input data... 100.0%┣███████████████████████┫ 3/3 [00:02<00:00, 1s/it]

ProcessData.jl functions: Test Failed at /home/pkgeval/.julia/packages/CBFV/5al6F/test/runtests.jl:88
  Expression: (processdata[3])[:elements] == ["Pr", "Ni", "Ru"]
   Evaluated: ["Pr", "Ru", "Ni"] == ["Pr", "Ni", "Ru"]
  Stacktrace:
   [1] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:751 [inlined]
   [2] macro expansion
     @ ~/.julia/packages/CBFV/5al6F/test/runtests.jl:88 [inlined]
   [3] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1952 [inlined]
   [4] macro expansion
     @ ~/.julia/packages/CBFV/5al6F/test/runtests.jl:69 [inlined]
   [5] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1952 [inlined]
   [6] top-level scope
     @ ~/.julia/packages/CBFV/5al6F/test/runtests.jl:7

ProcessData.jl functions: Test Failed at /home/pkgeval/.julia/packages/CBFV/5al6F/test/runtests.jl:89
  Expression: (processdata[3])[:amount] == [1.0, 3.0, 1.0]
   Evaluated: [1.0, 1.0, 3.0] == [1.0, 3.0, 1.0]
  Stacktrace:
   [1] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:751 [inlined]
   [2] macro expansion
     @ ~/.julia/packages/CBFV/5al6F/test/runtests.jl:89 [inlined]
   [3] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1952 [inlined]
   [4] macro expansion
     @ ~/.julia/packages/CBFV/5al6F/test/runtests.jl:69 [inlined]
   [5] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1952 [inlined]
   [6] top-level scope
     @ ~/.julia/packages/CBFV/5al6F/test/runtests.jl:7
┌ Warning: X in chemical formula PrX2 is not a valid symbol 
│         or is an unsupported element, this formula/entry is being skipped.
└ @ CBFV ~/.julia/packages/CBFV/5al6F/src/Errors.jl:37
┌ Warning: Q in chemical formula PrRuQ3 is not a valid symbol 
│         or is an unsupported element, this formula/entry is being skipped.
└ @ CBFV ~/.julia/packages/CBFV/5al6F/src/Errors.jl:37
┌ Warning: X in chemical formula PrX2 on row 1 is not a valid symbol 
│         or is an unsupported element, this formula/entry is being skipped.
└ @ CBFV ~/.julia/packages/CBFV/5al6F/src/Errors.jl:34
┌ Warning: Q in chemical formula PrRuQ3 on row 3 is not a valid symbol 
│         or is an unsupported element, this formula/entry is being skipped.
└ @ CBFV ~/.julia/packages/CBFV/5al6F/src/Errors.jl:34

0.0%┣                                                ┫ 0/1 [00:00<00:00, -0s/it]

Preparing input data... 100.0%┣██████████████████┫ 1/1 [00:00<Inf:Inf, InfGs/it]

Preparing input data... 100.0%┣██████████████████┫ 1/1 [00:00<Inf:Inf, InfGs/it]

0.0%┣                                                ┫ 0/1 [00:00<00:00, -0s/it]

Preparing input data... 100.0%┣██████████████████┫ 1/1 [00:00<Inf:Inf, InfGs/it]

Preparing input data... 100.0%┣██████████████████┫ 1/1 [00:00<Inf:Inf, InfGs/it]

0.0%┣                                                ┫ 0/3 [00:00<00:00, -0s/it]

Preparing input data... 100.0%┣████████████████████┫ 3/3 [00:00<00:00, 1.7kit/s]

Preparing input data... 100.0%┣████████████████████┫ 3/3 [00:00<00:00, 1.2kit/s]

33.3%┣██████████████▍                            ┫ 1/3 [00:04<Inf:Inf, InfGs/it]

Assigning features... 66.7%┣████████████████▊        ┫ 2/3 [00:10<00:10, 10s/it]

Assigning features... 100.0%┣█████████████████████████┫ 3/3 [00:10<00:00, 5s/it]

0.0%┣                                                ┫ 0/3 [00:00<00:00, -0s/it]

Preparing input data... 100.0%┣████████████████████┫ 3/3 [00:00<00:00, 1.8kit/s]

Preparing input data... 100.0%┣████████████████████┫ 3/3 [00:00<00:00, 1.1kit/s]

33.3%┣██████████████▍                            ┫ 1/3 [00:00<Inf:Inf, InfGs/it]

Assigning features... 100.0%┣██████████████████████┫ 3/3 [00:00<00:00, 5.6kit/s]

0.0%┣                                                ┫ 0/3 [00:00<00:00, -0s/it]

Preparing input data... 100.0%┣████████████████████┫ 3/3 [00:00<00:00, 1.8kit/s]

Preparing input data... 100.0%┣████████████████████┫ 3/3 [00:00<00:00, 1.2kit/s]

33.3%┣██████████████▍                            ┫ 1/3 [00:00<Inf:Inf, InfGs/it]

Assigning features... 100.0%┣██████████████████████┫ 3/3 [00:00<00:00, 2.0kit/s]

0.0%┣                                                ┫ 0/3 [00:00<00:00, -0s/it]

Preparing input data... 100.0%┣████████████████████┫ 3/3 [00:00<00:00, 4.1kit/s]

Preparing input data... 100.0%┣████████████████████┫ 3/3 [00:00<00:00, 2.6kit/s]

33.3%┣██████████████▍                            ┫ 1/3 [00:00<Inf:Inf, InfGs/it]

Assigning features... 100.0%┣██████████████████████┫ 3/3 [00:00<00:00, 7.2kit/s]
Test Summary:                      | Pass  Fail  Total     Time
CBFV.jl                            |  294     3    297  2m00.3s
  Types.jl constructors            |    1            1     1.6s
  ProcessFormulaInput.jl functions |   12           12     2.1s
  Composition.jl functions         |    2     1      3     6.7s
  Databases.jl functions           |    1            1     0.4s
  ProcessData.jl functions         |   10     2     12  1m26.6s
  Featurization.jl functions       |  268          268    22.7s
RNG of the outermost testset: Random.Xoshiro(0x3a73878eb5102e16, 0x1181092ed4a8c0c5, 0x9977b3a2122f9143, 0x0fe7657319a8f824, 0xdda0eb6b41970fb0)
ERROR: LoadError: Some tests did not pass: 294 passed, 3 failed, 0 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/CBFV/5al6F/test/runtests.jl:5

Testing failed after 177.43s

ERROR: LoadError: Package CBFV errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2673
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2522 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 470.21s: illegal method overwrites during precompilation